CreatePredAlphaCost pred_alpha2k alpha11 T0248.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0248.t04.alpha.rdb 2 alpha alpha_prev sum

# (near,way +5) (dry 5,6.5,8 +10)
SetCost wet6.5 5 near_backbone 10 way_back 10 dry5 25 dry6.5 30 dry8 25 dry12 5 \
	phobic_fit 3 \		#up (2->3)
	sidechain 1 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 5 \	#looks more like the str2 predictions (t2k & t04)
	pred_alpha04 5 \
	constraints 30 \	#up (20->30)
	hbond_geom 1 \
	hbond_geom_backbone 2 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

#from robetta-model2.helices
HelixConstraint N6	A14	5
HelixConstraint S21	H33	5
HelixConstraint D38	Q57	5
HelixConstraint D59	S65	5
HelixConstraint A63	L71	5
HelixConstraint P79	N92	5
HelixConstraint L90	Q99	5
HelixConstraint Q99	L106		5
HelixConstraint P107	Y119	5
HelixConstraint K122	L130	5
HelixConstraint Y128	T133	5
HelixConstraint P139	D151	5
HelixConstraint L154	Q168	3	#make some room for
HelixConstraint K204	L210	3	#strands to move here?
HelixConstraint E208	L217	5
HelixConstraint N224	F240	5
HelixConstraint S238	H243	5
HelixConstraint P247	Q261	5
HelixConstraint Q261	E266	5
HelixConstraint D272	H280	5
HelixConstraint V279	D287	5
HelixConstraint L286	G291	5


# from T0248.t04.dssp-ehl2.constraints
StrandConstraint	E175	S182	10
StrandConstraint	K185	L192	10
StrandConstraint	F195	Q200	10

# from try1-opt2.sheets
SheetConstraint K187 L192	Q200 F195	hbond F188	15	#s2-s3

# from robetta-model6.sheets -- use 'cause closer to conjectured
SheetConstraint E175 S182	L192 K185	hbond V177	10	#s1-s2