CreatePredAlphaCost pred_alpha2k alpha11 T0248.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0248.t04.alpha.rdb 2 alpha alpha_prev sum

#reset to values Kevin used for try12
SetCost wet6.5 5 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 5 \	#looks more like the str2 predictions (t2k & t04)
	pred_alpha04 5 \
	constraints 20 \
	hbond_geom 1 \
	hbond_geom_backbone 2 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

#from robetta-model2.helices
HelixConstraint N6	A14	5
HelixConstraint S21	H33	5
HelixConstraint D38	Q57	5
HelixConstraint D59	S65	5
HelixConstraint A63	L71	5
HelixConstraint P79	N92	5
HelixConstraint L90	Q99	5
HelixConstraint Q99	L106		5
HelixConstraint P107	Y119	5
HelixConstraint K122	L130	5
HelixConstraint Y128	T133	5
HelixConstraint P139	D151	5
HelixConstraint L154	Q168	3	#make some room for
HelixConstraint K204	L210	3	#strands to move here?
HelixConstraint E208	L217	5
HelixConstraint N224	F240	5
HelixConstraint S238	H243	5
HelixConstraint P247	Q261	5
HelixConstraint Q261	E266	5
HelixConstraint D272	H280	5
HelixConstraint V279	D287	5
HelixConstraint L286	G291	5


# from T0248.t04.dssp-ehl2.constraints
StrandConstraint	V177	F180	10
StrandConstraint	Q186	L190	10
StrandConstraint	F188	K185	10	#make it happen

# from try1-opt2.sheets
SheetConstraint K187 L192	Q200 F195	hbond F188	10

# from robetta-model6.sheets -- use 'cause closer to conjectured
SheetConstraint E175 S182	L192 K185	hbond V177	10

#from robetta-model4.sheets
//SheetConstraint G174 S182	G193 K185	hbond V177	10
# conjectured from previous tries
//SheetConstraint	V177 F180	F188 K185	10



//old helix constraints; replace with robetta-model2.helices
# from T0248.t04.dssp-ehl2.constraints, with dubious bits trimmed out
//HelixConstraint   N6  H18 3   #down, to free up this region
//HelixConstraint   Y22 Y32 3
//HelixConstraint   L40 Q57 3
//HelixConstraint   F60 L71 3
//HelixConstraint   K78 L90 3
//HelixConstraint   H93 A104    3
//HelixConstraint   A108    Q117    3
////HelixConstraint     M125    K134    3   #uncertain
//HelixConstraint   P139    L145    3   #shortened (V148 -> L145)
//HelixConstraint   S152    N167    3
//HelixConstraint   A203    L219    3
//HelixConstraint   N224    S238    3
//HelixConstraint   L248    L264    3
//HelixConstraint   E273    L286    3   #uncertain