(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0248 1260B, Mycoplasma pneumoniae M129
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MINKPNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDFKTAQS
   2 MINKPNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDFKTAQS
   3 MINKPNQFLNHLDGLKQHFSDYDSLQKSFKKYLSENQTELNNFFFNQFEKIIVLVKKKEFKTAQE
   4 IMKKWSNLIKTMMTKNKTFHTINEIINDLSN-SELANDQNTQFYLSLLMMIKTDLDNKDFKKALT
   5 ------------------------------KQTEKPKDQLTIYYENILSKVDALVKDKKINEALE
   6 -----------------------------------------------------------------


         70        80        90        100       110       120       13
         |         |         |          |         |         |         
   1 RCEEELAAPYLPKPLVSFFQSLLQLVNHDL.LEQQNAALASLPAAKIIELVLQDYPNKLNMIHYL
   2 RCEEELAAPYLPKPLVSFFQSLLQLVNHDL.LEQQNAALASLPAAKIIELVLQDYPNKLNMIHYL
   3 RCEEELATPYFSKPLVGFFQSLLQLINHDL.IEQKNQQLANMSCEKIVEMVLSDYPNKLNLIHYL
   4 SIQEELDTDYLPLALIDYFKQAHLVTKRLM.YENEFDWLEKLDKKELINKTIINFPENLWYFDYL
   5 MVNDELDSPYIPSEFEEAFMTISYNLSAEInYLNESVKYESLNREELFNSILNGKTINSVALSIF
   6 ------------------------------.----------------------------------


      0       140       150       160       170       180       190    
     |         |         |         |         |         |         |    
   1 LPKTKAFVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTLTLGE
   2 LPKTKAFVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTLTLGE
   3 LAKEASFVNPNLLQRMTFVLTDLELLELKRFSFFKALNQIPAFKNHKVTYFNSKLKQKFVITLGE
   4 ATKEENFWNIDDFEFFRHIFITKTYDNSDKLVAAQLLQKIEPFINLSFEVYNNKLKQTFTVTLKK
   5 LERYKDNIEVSELKIFDSFLSSKKIFDIDKQNLIIALK--PLNLDYEFDYYNSFADQIFKINIKS
   6 -----------------------------------------------------------------


         200       210       220       230       240        250       2
          |         |         |         |         |          |        
   1 FEIAQQPDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYFPLHPP.VPLAQLAAKIYEY
   2 FEIAQQPDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYFPLHPP.VPLAQLAAKIYEY
   3 FAFPQTDKTKQFFQQLIKKVSQLFLKEPVSCEFAYEIIDALLVSFFPLHPN.LEVNHLAKKIHQY
   4 DDIWA-KNTQAYFNDVLDQIESSFYKDPSKEQLATEIVNNIMQDYYPSYPDfVSVKELASGIIQY
   5 VNVLL---SSPYFVELNKLVEEFTYKEPSLQEFCYLIIFDLYVYYFPNHPD.YQISDLAYAIFQY
   6 -----------------------FLKEPVSCEFAYEIIDALLVSFFPLHPN.LEVNHLAKKIHQY


      60       270       280       290    
      |         |         |         |    
   1 VSQIVLNEAVNLKDELIKLIVHTLYEQLDRPVGDEN
   2 VSQIVLNEAVNLKDELIKLIVHTLYEQLDRPVGDEN
   3 VSKIVINEVVDLKDPTTKLIVDTLYEQLDRAIGEEN
   4 VKNCFDNKKPNTK-----------------------
   5 MLNSLQGNIKEYKNPEI-------------------
   6 VSKIVINEVVDLKDPTTKLIVDTLYEQLDRAIGEEN