# List of top-scoring protein chains for T0248.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hl6B 149 1.94e+00 d.232.1.1 83610 1oo0A 147 1.95e+00 d.232.1.1 87182 1uphA 131 3.44e+00 a.61.1.1 -1065 1hiwA 133 3.47e+00 1hiwA a.61.1.1 18122 1adwA 123 3.99e+00 1bqk b.6.1.1 22893 1cqxA 403 4.48e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1f16A 192 5.91e+00 1f16A f.1.4.1 43400 1ucrA 78 6.08e+00 unknown_sccs -308 1ixcA 294 8.04e+00 a.4.5.37 83764 c.94.1.1 83765 1hkvA 453 8.08e+00 b.49.2.3 83559 c.1.6.1 83560 1hme 77 9.13e+00 1cktA a.21.1.1 16418 1ne6A 283 9.23e+00 b.82.3.2 -4918 b.82.3.2 -4919 1rl3A 288 9.32e+00 1o86A 589 9.49e+00 d.92.1.5 81177 1l6nA 289 9.66e+00 a.61.1.1 73624 a.73.1.1 73625 1p27A 144 9.97e+00 d.232.1.1 -9026 1kv3A 687 1.04e+01 b.1.18.9 73027 b.1.5.1 73028 b.1.5.1 73029 d.3.1.4 73030 1tam 132 1.05e+01 1hiwA a.61.1.1 18128 1sur 215 1.09e+01 1sur c.26.2.2 31620 1jebB 146 1.14e+01 a.1.1.2 66592 1nhm 81 1.17e+01 1cktA a.21.1.1 16422 1hsm 79 1.18e+01 1cktA a.21.1.1 16421 1e6vA 553 1.40e+01 1mroA a.89.1.1 18527 d.58.31.2 39445 1cc1S 283 1.53e+01 2frvA e.19.1.1 43313 1k2pA 263 1.54e+01 d.144.1.7 72012 1dj2A 443 1.56e+01 1adeA c.37.1.10 32237 1jcfA 344 1.58e+01 c.55.1.1 62878 c.55.1.1 62879 1m4rA 151 1.69e+01 a.26.1.3 84799 2pna 104 1.71e+01 1qadA d.93.1.1 40501 1oo3A 111 1.74e+01 d.93.1.1 87184 1fu5A 111 1.77e+01 1qadA d.93.1.1 40505 1lm7A 248 1.81e+01 d.211.2.1 74031 1f5qB 252 1.99e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1s1hM 132 2.04e+01 1nmeB 92 2.11e+01 1hynP 379 2.14e+01 1hynP d.112.1.2 61408 1rhkB 102 2.19e+01 1bqk 124 2.20e+01 1bqk b.6.1.1 22889 1gfwB 97 2.26e+01 1pauB 1h6pA 203 2.27e+01 a.146.1.1 60690 2recA 353 2.31e+01 2reb i.2.1.1 45879 2reb 352 2.34e+01 2reb c.37.1.11 32282 d.48.1.1 38767 1m6yA 301 2.35e+01 a.60.13.1 78716 c.66.1.23 78717 1p42A 270 2.59e+01 d.14.1.7 87754 d.14.1.7 87755 1fpwA 190 2.69e+01 1rec a.39.1.5 17329 1r4mA 529 2.81e+01 c.111.1.2 -8276 1qr0A 228 2.90e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1pbuA 162 2.91e+01 d.58.46.1 88030 1nztA 282 2.92e+01 d.14.1.7 86455 d.14.1.7 86456 1evqA 310 3.07e+01 1jkmA c.69.1.2 34635 1a1z 91 3.17e+01 1a1z a.77.1.4 18427 3btaA 1295 3.29e+01 b.29.1.6 24268 b.42.4.2 25613 d.92.1.7 40304 h.4.2.1 45784 1gnwA 211 3.29e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1q7rA 219 3.30e+01 c.23.16.1 -6507 1rhjB 110 3.32e+01 1fokA 576 3.32e+01 2fokA a.4.5.12 16137 a.4.5.12 16138 a.4.5.12 16139 c.52.1.12 33325 1r0vA 305 3.34e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1ppa 121 3.39e+01 1poa a.133.1.2 19550 1rpmA 278 3.42e+01 2shpA c.45.1.2 32679 1c7qA 445 3.45e+01 2pgi c.80.1.2 35307 1ub9A 100 3.49e+01 a.4.5.28 -231 2fokA 579 3.50e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1pg5A 299 3.51e+01 1j6rA 214 3.53e+01 d.173.1.2 71598 1a4sA 503 3.53e+01 1bpwA c.82.1.1 35361 1qz3A 310 3.67e+01 c.69.1.2 -8295 1hovA 163 3.86e+01 d.92.1.11 65897