# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mhyB 395 5.18e-01 1mtyB a.25.1.2 16781 1o86A 589 6.82e-01 d.92.1.5 81177 1oo0A 147 1.26e+00 d.232.1.1 87182 1hiwA 133 1.95e+00 1hiwA a.61.1.1 18122 1tam 132 2.20e+00 1hiwA a.61.1.1 18128 1ku2A 241 2.51e+00 a.4.13.1 83096 a.177.1.1 83097 1guxA 218 2.52e+00 1guxA a.74.1.3 18388 1ohuA 175 2.81e+00 f.1.4.1 -12058 1sur 215 2.96e+00 1sur c.26.2.2 31620 1l6nA 289 3.25e+00 a.61.1.1 73624 a.73.1.1 73625 2hmx 133 3.73e+00 1hiwA a.61.1.1 18129 1n83A 270 4.06e+00 a.123.1.1 80276 1lw3A 657 5.11e+00 unknown_sccs -4378 unknown_sccs -7358 1guxB 152 6.31e+00 1guxB a.74.1.3 18389 1nxcA 478 6.48e+00 a.102.2.1 -1333 1eqfA 280 7.08e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1nrjA 158 7.17e+00 d.110.4.4 86124 1tlqA 189 7.53e+00 1nt2B 258 8.58e+00 a.183.1.1 86150 1fo3A 460 8.90e+00 1dl2A a.102.2.1 18845 1k66A 149 9.52e+00 c.23.1.1 -6406 1av1A 201 9.60e+00 1av1A h.5.1.1 45796 1ki1B 352 9.66e+00 a.87.1.1 72497 b.55.1.1 72498 1ut0A 190 1.02e+01 1cwyA 500 1.03e+01 1cwyA c.1.8.1 28789 1ao6A 585 1.03e+01 1bj5 a.126.1.1 19354 a.126.1.1 19355 a.126.1.1 19356 1eswA 500 1.12e+01 1cwyA c.1.8.1 59500 1sk7A 198 1.16e+01 1paqA 189 1.17e+01 unknown_sccs -1557 1iw0A 215 1.17e+01 a.132.1.1 83720 1d6aB 262 1.21e+01 1qi7A d.165.1.1 42198 2hrvA 142 1.46e+01 2hrvA b.47.1.4 26429 1ncx 162 1.48e+01 1ncx a.39.1.5 17222 1b1cA 181 1.55e+01 1amoA c.23.5.2 31212 1om2A 95 1.57e+01 1om2A a.23.4.1 16520 1j77A 209 1.62e+01 1j77A a.132.1.2 62674 1qciA 262 1.65e+01 1qi7A d.165.1.1 42201 1jqhA 308 1.68e+01 d.144.1.7 71793 1top 162 1.70e+01 1ncx a.39.1.5 17223 1hbkA 94 1.73e+01 1aca a.11.1.1 60887 1gnwA 211 1.74e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1ur5A 309 1.78e+01 c.2.1.5 -5910 d.162.1.1 -11477 1ad6 185 1.78e+01 1guxA a.74.1.3 18390 1d1dA 262 1.82e+01 1d1dA a.28.3.1 16958 a.73.1.1 18335 1eo0A 77 1.84e+01 1eo0A a.48.3.1 17790 1dceA 567 1.95e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1qr0A 228 1.97e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1p4oA 322 1.97e+01 d.144.1.7 87775 1g8aA 227 2.00e+01 c.66.1.3 -8049 1n8vA 112 2.09e+01 unknown_sccs 85457 1babB 146 2.10e+01 1abwA a.1.1.2 15414 1dxtB 147 2.20e+01 1abwA a.1.1.2 15450 1aisB 200 2.22e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1lnwA 147 2.23e+01 a.4.5.28 78104 1auiB 169 2.24e+01 1auiB a.39.1.5 17325 1k6iA 352 2.24e+01 c.2.1.2 68223 1d8vA 263 2.27e+01 1mrj d.165.1.1 42193 1dbqA 289 2.37e+01 1qpzA c.93.1.1 35666 1ja1A 622 2.48e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1nmeB 92 2.52e+01 1pauB 102 2.55e+01 1pauB 1s4nA 348 2.57e+01 unknown_sccs -8262 1j54A 186 2.58e+01 c.55.3.5 77077 1a6q 382 2.61e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1kx9A 112 2.64e+01 unknown_sccs 77602 1k6xA 352 2.70e+01 c.2.1.2 68238 1a87 321 2.76e+01 1a87 f.1.1.1 43380 1f7lA 121 2.77e+01 1f7lA d.150.1.2 59666 1f7tA 122 2.79e+01 1f7lA d.150.1.2 59667 1vk3A 615 2.85e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1mrg 263 2.96e+01 1mrj d.165.1.1 42183 1bj5 585 2.97e+01 1bj5 a.126.1.1 19369 a.126.1.1 19370 a.126.1.1 19371 1omwA 689 2.97e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1ub9A 100 2.98e+01 a.4.5.28 -231 1rdr 461 3.09e+01 1rdr e.8.1.4 43116 1dvkA 173 3.10e+01 1dvkA a.72.1.1 18319 1pi1A 185 3.17e+01 unknown_sccs -762 1hkvA 453 3.20e+01 b.49.2.3 83559 c.1.6.1 83560 1lshA 1056 3.36e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1pfvA 551 3.45e+01 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1f4lA 551 3.60e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1v61A 132 3.63e+01 1hn0A 1021 3.77e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1bg1A 722 3.79e+01 1bg1A a.47.1.1 17767 b.2.5.5 22461 d.93.1.1 40527 1mjgM 729 3.80e+01 e.26.1.3 79204 1yveJ 524 3.86e+01 1qmgA a.100.1.2 18790 c.2.1.6 30187 1dpgA 485 3.89e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1oe9A 795 3.95e+01 b.34.3.1 -3581 c.37.1.9 -7103 1oaoC 729 3.97e+01 e.26.1.3 86746 1q08A 99 3.97e+01 a.6.1.3 -381 1jksA 294 3.97e+01 d.144.1.7 71710 1kyoG 126 3.98e+01 f.27.1.1 73259