# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hkvA 453 3.97e-01 b.49.2.3 83559 c.1.6.1 83560 1hme 77 4.82e-01 1cktA a.21.1.1 16418 1om2A 95 1.03e+00 1om2A a.23.4.1 16520 1cqxA 403 1.25e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1bgvA 449 1.36e+00 1k89 c.2.1.7 30217 c.58.1.1 33865 1oo0A 147 1.38e+00 d.232.1.1 87182 1k89 449 1.89e+00 1k89 c.2.1.7 30218 c.58.1.1 33866 1sur 215 2.28e+00 1sur c.26.2.2 31620 1hrdA 449 2.45e+00 1k89 c.2.1.7 30219 c.58.1.1 33867 1hsm 79 2.80e+00 1cktA a.21.1.1 16421 1iuqA 367 3.25e+00 c.112.1.1 -8440 1ixcA 294 3.63e+00 a.4.5.37 83764 c.94.1.1 83765 1iz1A 294 3.85e+00 a.4.5.37 83823 c.94.1.1 83824 1uzeA 589 3.88e+00 1v8cA 168 4.43e+00 d.15.3.1 -9175 unknown_sccs -11012 1k30A 368 4.92e+00 c.112.1.1 68067 1j8yF 297 4.94e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1jceA 344 4.94e+00 c.55.1.1 62876 c.55.1.1 62877 1g8qA 90 5.42e+00 1g8qA a.135.1.1 19621 1ls1A 295 5.46e+00 a.24.13.1 78170 c.37.1.10 78171 1ezwA 349 5.82e+00 1ezwA c.1.16.3 29558 1jpnA 296 5.86e+00 a.24.13.1 67039 c.37.1.10 67040 1qkkA 155 5.89e+00 1dbwA c.23.1.1 31104 1odoA 408 6.02e+00 a.104.1.1 -1463 1bf6A 291 6.38e+00 1pscA c.1.9.3 29065 1rxwA 336 6.59e+00 a.60.7.1 -1041 c.120.1.2 -6680 1j8mF 297 6.63e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1tlqA 189 6.63e+00 1a17 166 6.91e+00 1a17 a.118.8.1 19206 1m33A 258 7.01e+00 c.69.1.26 78514 1n3lA 372 7.06e+00 c.26.1.1 79966 1rtwA 220 7.23e+00 unknown_sccs -1904 1toh 343 7.26e+00 4pah d.178.1.1 42573 1kr7A 110 7.36e+00 a.1.1.4 72890 1o86A 589 7.37e+00 d.92.1.5 81177 1v0dA 329 7.49e+00 1a1z 91 7.59e+00 1a1z a.77.1.4 18427 1fvzA 271 8.42e+00 1fvzA 1qb0A 211 8.74e+00 1c25 c.46.1.1 32699 1f07A 321 8.86e+00 1ezwA c.1.16.3 59560 1sek 378 9.79e+00 1sek e.1.1.1 42675 1b5l 172 1.00e+01 1b5l a.26.1.3 16900 1ucrA 78 1.01e+01 unknown_sccs -308 1r44A 202 1.08e+01 1hiwA 133 1.11e+01 1hiwA a.61.1.1 18122 1jcfA 344 1.18e+01 c.55.1.1 62878 c.55.1.1 62879 1bolA 222 1.20e+01 1bolA d.124.1.1 41120 1ub9A 100 1.23e+01 a.4.5.28 -231 1ek8A 185 1.27e+01 1ek8A d.67.3.1 59444 1q9jA 422 1.28e+01 1f8rA 498 1.30e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1gd8A 118 1.33e+01 d.188.1.1 60445 1fxkC 133 1.38e+01 1fxkC a.2.5.1 15702 1r9dA 787 1.44e+01 1ng1 294 1.47e+01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1rypG 244 1.50e+01 d.153.1.4 41938 1kmmA 424 1.52e+01 1adjA c.51.1.1 33174 d.104.1.1 40723 1ichA 112 1.63e+01 a.77.1.2 71182 1n27A 96 1.65e+01 b.34.9.2 -3585 1pvaA 110 1.67e+01 1a75A a.39.1.4 17207 1it2A 146 1.68e+01 a.1.1.2 66365 1jalA 363 1.70e+01 c.37.1.8 84138 d.15.10.2 84139 1ab8A 220 1.73e+01 1azsA d.58.29.1 39414 1k66A 149 1.77e+01 c.23.1.1 -6406 1guxA 218 1.78e+01 1guxA a.74.1.3 18388 1jd5A 124 1.81e+01 g.52.1.1 66544 1m6yA 301 1.85e+01 a.60.13.1 78716 c.66.1.23 78717 1nx8A 273 1.87e+01 b.82.2.8 86374 1r0vA 305 1.89e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1s8fA 177 1.92e+01 1httA 423 1.99e+01 1adjA c.51.1.1 33178 d.104.1.1 40727 1ncx 162 2.06e+01 1ncx a.39.1.5 17222 2spcA 107 2.08e+01 2spcA a.7.1.1 16311 1gv3A 248 2.10e+01 a.2.11.1 70585 d.44.1.1 70586 1mngA 203 2.12e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1nubA 229 2.21e+01 1sra a.39.1.3 17191 g.3.11.3 44330 unknown_sccs 44715 1d5nA 205 2.26e+01 1avmA a.2.11.1 15762 d.44.1.1 38687 1iioA 84 2.27e+01 a.39.4.1 66150 1pauB 102 2.28e+01 1pauB 1nmeB 92 2.35e+01 1gvnA 90 2.35e+01 a.8.2.1 76353 1nt2B 258 2.36e+01 a.183.1.1 86150 1is1A 185 2.40e+01 d.67.3.1 83704 1or4A 178 2.43e+01 a.1.1.2 -91 1eqfA 280 2.50e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1cpzA 68 2.50e+01 1aw0 d.58.17.1 39351 1azsB 212 2.50e+01 1azsA d.58.29.1 39423 1na3A 91 2.50e+01 k.38.1.1 85481 1qpsA 261 2.50e+01 1ckqA c.52.1.1 33234 1uhnA 189 2.52e+01 a.39.1.5 -853 1avoB 140 2.67e+01 1avoB 1d6jA 211 2.70e+01 1d6jA c.37.1.4 31940 1l5zA 155 2.73e+01 c.23.1.1 77722 1gxqA 106 2.74e+01 a.4.6.1 70721 1jdhA 529 2.75e+01 a.118.1.1 66549 1jx2B 315 2.81e+01 c.37.1.8 67404 1cl8A 276 2.87e+01 1ckqA c.52.1.1 33230 1bkcE 256 2.89e+01 1bkcA d.92.1.10 40333 1ckqA 276 2.90e+01 1ckqA c.52.1.1 33229 1f5mA 180 2.92e+01 1f5mB d.110.2.1 40895 1h8mA 140 2.92e+01 1h8mA d.110.4.1 60782 1jvr 137 2.95e+01 1jvr a.61.1.2 18132 2kfnA 605 2.96e+01 1xwl c.55.3.5 33682 e.8.1.1 42975 1t35A 191 2.97e+01 unknown_sccs -7285 1qu1A 155 2.97e+01 1qu1A h.3.1.1 45670 1nf1A 333 3.01e+01 1nf1A a.116.1.2 19110 1top 162 3.05e+01 1ncx a.39.1.5 17223 1elrA 131 3.07e+01 1a17 a.118.8.1 19209 1m7gA 211 3.09e+01 c.37.1.4 78724 1ovnA 248 3.15e+01 a.71.1.1 -1096 c.47.1.7 -7477 1q7zA 566 3.16e+01 c.1.21.2 -5638 c.1.26.1 -5666 1gpjA 404 3.17e+01 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 2ae2A 260 3.17e+01 1bdb c.2.1.2 29945 1bkcA 255 3.19e+01 1bkcA d.92.1.10 40331 1knvA 293 3.20e+01 c.52.1.7 68707 1gks 78 3.21e+01 1cc5 a.3.1.1 15909 1reoA 486 3.21e+01 c.3.1.2 -5997 d.16.1.5 -9217 1cp3A 277 3.35e+01 1pauA c.17.1.1 30992 1k1vA 41 3.35e+01 a.37.1.1 71999 1v95A 130 3.37e+01 1ix9A 205 3.40e+01 a.2.11.1 76899 d.44.1.1 76900 1kepA 348 3.40e+01 c.2.1.2 68536 1ox3A 109 3.40e+01 h.1.17.1 -12938 1h5wA 309 3.41e+01 e.27.1.1 65635 1fafA 79 3.42e+01 1fafA a.2.3.1 15700 1qtnB 95 3.43e+01 1pauB 1e8aA 91 3.45e+01 1b4cA a.39.1.2 17188 1nwbA 124 3.46e+01 b.124.1.1 86296 1bqk 124 3.50e+01 1bqk b.6.1.1 22889 1qlnA 883 3.56e+01 1cezA e.8.1.3 43111 1lvfA 110 3.61e+01 a.47.2.1 74280 1vf6C 72 3.62e+01 unknown_sccs -1180 1i7pA 274 3.65e+01 b.43.4.2 66048 c.25.1.1 66049 1rss 151 3.66e+01 1rss a.75.1.1 18392 1fyhA 258 3.67e+01 1d9cA a.26.1.3 16907 a.26.1.3 16908 1eriA 276 3.72e+01 1ckqA c.52.1.1 33231 1kmnD 424 3.74e+01 1adjA c.51.1.1 33185 d.104.1.1 40734 1r4gA 53 3.79e+01 unknown_sccs -428 1qgwC 177 3.80e+01 1qgwC a.1.1.3 15673 1n5uA 585 3.87e+01 a.126.1.1 85339 a.126.1.1 85340 a.126.1.1 85341 1adt 356 3.91e+01 1anv a.54.1.1 17887 g.51.1.1 45362 g.51.1.1 45368 1t5hX 504 3.98e+01