# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o86A 589 2.69e-01 d.92.1.5 81177 1mhyB 395 3.51e-01 1mtyB a.25.1.2 16781 1oo0A 147 1.19e+00 d.232.1.1 87182 1l6nA 289 1.70e+00 a.61.1.1 73624 a.73.1.1 73625 1guxA 218 1.95e+00 1guxA a.74.1.3 18388 1hiwA 133 2.51e+00 1hiwA a.61.1.1 18122 1g0uI 205 2.89e+00 d.153.1.4 41891 1paqA 189 3.12e+00 unknown_sccs -1557 1rypJ 204 3.24e+00 d.153.1.4 41878 1tam 132 3.86e+00 1hiwA a.61.1.1 18128 1nxcA 478 4.00e+00 a.102.2.1 -1333 2hmx 133 4.12e+00 1hiwA a.61.1.1 18129 1ku2A 241 5.05e+00 a.4.13.1 83096 a.177.1.1 83097 1sur 215 5.17e+00 1sur c.26.2.2 31620 1lw3A 657 6.06e+00 unknown_sccs -4378 unknown_sccs -7358 1ub9A 100 7.51e+00 a.4.5.28 -231 1j54A 186 7.68e+00 c.55.3.5 77077 1bolA 222 8.15e+00 1bolA d.124.1.1 41120 1fg7A 356 8.20e+00 1gewA c.67.1.1 59819 1dvkA 173 9.03e+00 1dvkA a.72.1.1 18319 1nw1A 429 9.62e+00 d.144.1.8 86286 1yfm 488 9.83e+00 1furA a.127.1.1 19413 1dceA 567 1.12e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1ut0A 190 1.12e+01 1qr0A 228 1.13e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 2hrvA 142 1.15e+01 2hrvA b.47.1.4 26429 1g5qA 181 1.17e+01 1g5qA c.34.1.1 60288 1qcrC 378 1.20e+01 1be3C f.32.1.1 75931 f.21.1.2 75932 1rgs 288 1.21e+01 1rgs b.82.3.2 28146 b.82.3.2 28147 1uwsA 489 1.23e+01 1d1dA 262 1.24e+01 1d1dA a.28.3.1 16958 a.73.1.1 18335 1eqfA 280 1.29e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1fo3A 460 1.32e+01 1dl2A a.102.2.1 18845 1i37A 260 1.43e+01 1a28A a.123.1.1 61583 1om2A 95 1.47e+01 1om2A a.23.4.1 16520 1sk7A 198 1.59e+01 1tlqA 189 1.61e+01 1dbqA 289 1.65e+01 1qpzA c.93.1.1 35666 1f7lA 121 1.67e+01 1f7lA d.150.1.2 59666 1ncx 162 1.79e+01 1ncx a.39.1.5 17222 1top 162 1.79e+01 1ncx a.39.1.5 17223 1guxB 152 1.81e+01 1guxB a.74.1.3 18389 1nt2B 258 1.84e+01 a.183.1.1 86150 1nmeB 92 1.89e+01 1av1A 201 1.98e+01 1av1A h.5.1.1 45796 1b47A 304 2.04e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1gewA 356 2.04e+01 1gewA c.67.1.1 60470 1r9dA 787 2.06e+01 1f7tA 122 2.10e+01 1f7lA d.150.1.2 59667 1fztA 211 2.23e+01 1qhfA c.60.1.1 60158 1tbmA 326 2.30e+01 1pauB 102 2.33e+01 1pauB 1hbkA 94 2.45e+01 1aca a.11.1.1 60887 1cwyA 500 2.48e+01 1cwyA c.1.8.1 28789 1nrjA 158 2.54e+01 d.110.4.4 86124 1iv8A 720 2.60e+01 b.71.1.1 76842 c.1.8.1 76843 1k6iA 352 2.66e+01 c.2.1.2 68223 1v61A 132 2.79e+01 1eswA 500 2.84e+01 1cwyA c.1.8.1 59500 1n8vA 112 2.88e+01 unknown_sccs 85457 1vk3A 615 2.93e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1q0gA 117 2.93e+01 1ohuA 175 3.05e+01 f.1.4.1 -12058 1jksA 294 3.07e+01 d.144.1.7 71710 1vkiA 181 3.10e+01 1hn0A 1021 3.26e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1h6oA 204 3.30e+01 a.146.1.1 60689 1k30A 368 3.41e+01 c.112.1.1 68067 1kx9A 112 3.44e+01 unknown_sccs 77602 1g8qA 90 3.44e+01 1g8qA a.135.1.1 19621 1ad6 185 3.57e+01 1guxA a.74.1.3 18390 1ucrA 78 3.59e+01 unknown_sccs -308 1cp3A 277 3.90e+01 1pauA c.17.1.1 30992 1ka2A 499 3.93e+01 d.92.1.5 77305 1lshA 1056 3.99e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1iuqA 367 4.00e+01 c.112.1.1 -8440