# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mhyB 395 2.47e-01 1mtyB a.25.1.2 16781 1o86A 589 3.52e-01 d.92.1.5 81177 1dvkA 173 3.76e-01 1dvkA a.72.1.1 18319 1g0uI 205 5.62e-01 d.153.1.4 41891 1l6nA 289 5.67e-01 a.61.1.1 73624 a.73.1.1 73625 1rypJ 204 5.96e-01 d.153.1.4 41878 1hiwA 133 6.26e-01 1hiwA a.61.1.1 18122 2hmx 133 7.48e-01 1hiwA a.61.1.1 18129 1oo0A 147 9.81e-01 d.232.1.1 87182 1ku2A 241 1.21e+00 a.4.13.1 83096 a.177.1.1 83097 1sur 215 1.43e+00 1sur c.26.2.2 31620 1tam 132 1.49e+00 1hiwA a.61.1.1 18128 1guxA 218 1.65e+00 1guxA a.74.1.3 18388 1dceA 567 1.65e+00 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1nxcA 478 2.09e+00 a.102.2.1 -1333 1ut0A 190 2.28e+00 1ki1B 352 2.59e+00 a.87.1.1 72497 b.55.1.1 72498 1cwyA 500 2.81e+00 1cwyA c.1.8.1 28789 1eswA 500 2.87e+00 1cwyA c.1.8.1 59500 1guxB 152 3.30e+00 1guxB a.74.1.3 18389 1tlqA 189 3.48e+00 1fg7A 356 3.58e+00 1gewA c.67.1.1 59819 1pfvA 551 3.80e+00 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1qciA 262 4.17e+00 1qi7A d.165.1.1 42201 1eqfA 280 4.48e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1paqA 189 4.55e+00 unknown_sccs -1557 1f4lA 551 4.71e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1r71A 178 4.85e+00 1gewA 356 5.02e+00 1gewA c.67.1.1 60470 1irdB 146 6.14e+00 a.1.1.2 66287 1babB 146 6.27e+00 1abwA a.1.1.2 15414 1dxtB 147 6.27e+00 1abwA a.1.1.2 15450 1jqhA 308 6.48e+00 d.144.1.7 71793 1a1z 91 6.59e+00 1a1z a.77.1.4 18427 1lw3A 657 6.62e+00 unknown_sccs -4378 unknown_sccs -7358 1rdr 461 6.82e+00 1rdr e.8.1.4 43116 1p4oA 322 6.90e+00 d.144.1.7 87775 1gw5B 591 7.32e+00 a.118.1.10 70630 1j8mF 297 7.83e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1k4wA 252 8.02e+00 a.123.1.1 72068 1j54A 186 8.12e+00 c.55.3.5 77077 1jpnA 296 8.35e+00 a.24.13.1 67039 c.37.1.10 67040 1ls1A 295 8.35e+00 a.24.13.1 78170 c.37.1.10 78171 1ohuA 175 8.37e+00 f.1.4.1 -12058 1jksA 294 8.43e+00 d.144.1.7 71710 1j8yF 297 8.74e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1g8qA 90 8.85e+00 1g8qA a.135.1.1 19621 1dvpA 220 8.88e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1q0gA 117 9.31e+00 1rgs 288 9.42e+00 1rgs b.82.3.2 28146 b.82.3.2 28147 1k87A 669 9.45e+00 a.176.1.1 77286 c.1.23.2 77287 2hrvA 142 9.57e+00 2hrvA b.47.1.4 26429 1om2A 95 9.62e+00 1om2A a.23.4.1 16520 1knvA 293 9.75e+00 c.52.1.7 68707 1nmeB 92 9.87e+00 1ka2A 499 9.94e+00 d.92.1.5 77305 1kblA 873 1.01e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1d6aB 262 1.01e+01 1qi7A d.165.1.1 42198 1lvaA 258 1.06e+01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1sk7A 198 1.10e+01 1f7tA 122 1.10e+01 1f7lA d.150.1.2 59667 1qr0A 228 1.10e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1pnkA 209 1.11e+01 1ajqA d.153.1.2 41839 1dbqA 289 1.13e+01 1qpzA c.93.1.1 35666 1j7yB 146 1.15e+01 a.1.1.2 66427 1nt2B 258 1.16e+01 a.183.1.1 86150 1i3dA 146 1.19e+01 a.1.1.2 61587 1v61A 132 1.23e+01 1alvA 173 1.23e+01 1alvA a.39.1.8 17370 1ng1 294 1.23e+01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1pauB 102 1.23e+01 1pauB 1tbmA 326 1.23e+01 1a6q 382 1.26e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1n83A 270 1.27e+01 a.123.1.1 80276 1n97A 389 1.28e+01 a.104.1.1 80335 1dik 874 1.29e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1sedA 117 1.31e+01 1aisB 200 1.35e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1qwlA 505 1.37e+01 e.5.1.1 -11823 1hn0A 1021 1.37e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1r9dA 787 1.38e+01 1hbkA 94 1.40e+01 1aca a.11.1.1 60887 1d8vA 263 1.40e+01 1mrj d.165.1.1 42193 1hzdA 272 1.41e+01 c.14.1.3 65969 1nw1A 429 1.41e+01 d.144.1.8 86286 1qcrC 378 1.49e+01 1be3C f.32.1.1 75931 f.21.1.2 75932 1qqtA 551 1.49e+01 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 1nq7A 244 1.50e+01 a.123.1.1 -1682 1lfkA 398 1.56e+01 a.104.1.1 77926 1kpsB 171 1.58e+01 a.118.12.1 68787 1ad3A 452 1.60e+01 1ad3A c.82.1.1 35335 1k66A 149 1.60e+01 c.23.1.1 -6406 1vk3A 615 1.63e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1i37A 260 1.65e+01 1a28A a.123.1.1 61583 1nrjA 158 1.66e+01 d.110.4.4 86124 1p7gA 222 1.66e+01 a.2.11.1 -108 d.44.1.1 -9742 1vkeA 133 1.66e+01 1lnwA 147 1.71e+01 a.4.5.28 78104 1ur5A 309 1.72e+01 c.2.1.5 -5910 d.162.1.1 -11477 1n8vA 112 1.73e+01 unknown_sccs 85457 1cp3A 277 1.81e+01 1pauA c.17.1.1 30992 1d1dA 262 1.85e+01 1d1dA a.28.3.1 16958 a.73.1.1 18335 1mv8A 436 1.87e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1mrg 263 1.88e+01 1mrj d.165.1.1 42183 1uj2A 252 1.92e+01 c.37.1.6 -7061 1n46A 258 1.99e+01 a.123.1.1 85315 1ub9A 100 2.00e+01 a.4.5.28 -231 1av1A 201 2.06e+01 1av1A h.5.1.1 45796 1k8tA 510 2.07e+01 e.41.1.1 68316 1pi1A 185 2.09e+01 unknown_sccs -762 1f7lA 121 2.14e+01 1f7lA d.150.1.2 59666 1tgoA 773 2.18e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1oqvA 192 2.19e+01 d.24.1.2 87320 2ng1 293 2.21e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1k30A 368 2.26e+01 c.112.1.1 68067 1bolA 222 2.26e+01 1bolA d.124.1.1 41120 1yfm 488 2.33e+01 1furA a.127.1.1 19413 3sdhA 146 2.33e+01 3sdhA a.1.1.2 14984 1iuqA 367 2.33e+01 c.112.1.1 -8440 1a32 88 2.37e+01 1a32 a.16.1.2 16384 1brwA 433 2.39e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1hme 77 2.42e+01 1cktA a.21.1.1 16418 1ucrA 78 2.45e+01 unknown_sccs -308 1kb9C 385 2.47e+01 f.32.1.1 77315 f.21.1.2 77316 1ezvC 385 2.50e+01 1be3C f.32.1.1 75833 f.21.1.2 75834 2matA 264 2.50e+01 1c24A d.127.1.1 41146 1a87 321 2.52e+01 1a87 f.1.1.1 43380 1bg6 359 2.55e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1ciy 590 2.55e+01 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1kncA 177 2.58e+01 a.152.1.1 68703 1gu9A 177 2.60e+01 a.152.1.1 65540 1gm7A 209 2.61e+01 d.153.1.2 65302 1j1qA 261 2.63e+01 d.165.1.1 -11546 1iv8A 720 2.63e+01 b.71.1.1 76842 c.1.8.1 76843 1e3aA 260 2.64e+01 1ajqA d.153.1.2 41838 1gnwA 211 2.69e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1em2A 229 2.71e+01 1em2A d.129.3.2 41321 1oaoC 729 2.73e+01 e.26.1.3 86746 1cezA 883 2.74e+01 1cezA e.8.1.3 43110 1kyoC 385 2.80e+01 f.32.1.1 75904 f.21.1.2 75905 1lk5A 229 2.85e+01 unknown_sccs 73960 d.58.40.1 73961 1q5qA 259 2.86e+01 d.153.1.4 -11433 1a1w 91 2.88e+01 1a1z a.77.1.4 18425 1na3A 91 2.89e+01 k.38.1.1 85481 1pbwA 216 2.97e+01 1pbwA a.116.1.1 19103 1c4qA 69 2.99e+01 2bosA b.40.2.1 25010 1pu6A 218 3.02e+01 unknown_sccs -1282 1mjgM 729 3.05e+01 e.26.1.3 79204 1vkiA 181 3.05e+01 1kx9A 112 3.07e+01 unknown_sccs 77602 1ncx 162 3.10e+01 1ncx a.39.1.5 17222 1ajqA 209 3.11e+01 1ajqA d.153.1.2 41840 1dkxA 219 3.11e+01 1dkzA unknown_sccs -446 unknown_sccs -3061 1jalA 363 3.15e+01 c.37.1.8 84138 d.15.10.2 84139 1fztA 211 3.16e+01 1qhfA c.60.1.1 60158 1cqxA 403 3.27e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1h3qA 140 3.29e+01 d.110.4.3 76652 1j6rA 214 3.29e+01 d.173.1.2 71598 1dgwX 79 3.30e+01 1caxB b.82.1.2 28091 1h6pA 203 3.32e+01 a.146.1.1 60690 1c7qA 445 3.34e+01 2pgi c.80.1.2 35307 1k1vA 41 3.40e+01 a.37.1.1 71999 1rvkA 382 3.53e+01 c.1.11.2 -5568 d.54.1.1 -9826 1lw1A 177 3.58e+01 a.152.1.1 74290 4ubpA 101 3.59e+01 1ubpA d.8.1.1 37352 1b0zA 445 3.62e+01 2pgi c.80.1.2 35309 2pgi 445 3.62e+01 2pgi c.80.1.2 35308 1g8aA 227 3.64e+01 c.66.1.3 -8049 1fhuA 320 3.65e+01 1fhuA c.1.11.2 29234 d.54.1.1 38878 1gk9A 260 3.67e+01 d.153.1.2 65246 1qoyA 318 3.68e+01 1qoyA h.4.4.1 45788 1dceB 331 3.69e+01 1dceB a.102.4.3 18872 1ezvF 125 3.72e+01 1be3F f.27.1.1 59550 1dgrV 79 3.73e+01 1caxB b.82.1.2 28099 1vpwA 340 3.77e+01 1qpzA a.35.1.5 17087 c.93.1.1 35680 1nwbA 124 3.78e+01 b.124.1.1 86296 1uhnA 189 3.80e+01 a.39.1.5 -853 1wetA 340 3.87e+01 1qpzA a.35.1.5 17093 c.93.1.1 35670 1kkhA 317 3.90e+01 d.14.1.5 72645 d.58.26.3 72646 1e8aA 91 3.92e+01 1b4cA a.39.1.2 17188 1oxjA 173 3.94e+01 a.60.1.2 87517 a.118.1.13 87518 1dgrN 79 3.96e+01 1caxB 1ai7A 209 3.96e+01 1ajqA d.153.1.2 41845 1em9A 154 3.97e+01 1d1dA a.73.1.1 18333 1ir3A 306 3.99e+01 1fmk d.144.1.7 41702