# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fyhA	258	1.48e+00	1d9cA	a.26.1.3	16907
				a.26.1.3	16908
1hiwA	133	1.63e+00	1hiwA	a.61.1.1	18122
1oo0A	147	3.47e+00		d.232.1.1	87182
1tam	132	3.67e+00	1hiwA	a.61.1.1	18128
1ucrA	78	3.78e+00		unknown_sccs	-308
1guxA	218	4.51e+00	1guxA	a.74.1.3	18388
1ne6A	283	6.01e+00		b.82.3.2	-4918
				b.82.3.2	-4919
1scfA	273	1.25e+01	1exzA	a.26.1.2	16873
1sur	215	1.28e+01	1sur	c.26.2.2	31620
1hkvA	453	1.31e+01		b.49.2.3	83559
				c.1.6.1	83560
1pauB	102	1.56e+01	1pauB		
1rgs	288	1.72e+01	1rgs	b.82.3.2	28146
				b.82.3.2	28147
1pbuA	162	1.75e+01		d.58.46.1	88030
1b4cA	92	1.87e+01	1b4cA	a.39.1.2	17169
1j6rA	214	1.89e+01		d.173.1.2	71598
1nmeB	92	2.02e+01			
1jw2A	72	2.02e+01		a.23.5.1	67372
1dxy	333	2.02e+01	1dxy	c.2.1.4	30094
				c.23.12.1	31354
1v8cA	168	2.05e+01		d.15.3.1	-9175
				unknown_sccs	-11012
1alu	186	2.07e+01	1alu	a.26.1.1	16826
1e1hB	174	2.20e+01			
1ixcA	294	2.22e+01		a.4.5.37	83764
				c.94.1.1	83765
1iz1A	294	2.28e+01		a.4.5.37	83823
				c.94.1.1	83824
1l6nA	289	2.34e+01		a.61.1.1	73624
				a.73.1.1	73625
1v0dA	329	2.35e+01			
1s8fA	177	2.40e+01			
1ncx	162	2.53e+01	1ncx	a.39.1.5	17222
1toh	343	2.62e+01	4pah	d.178.1.1	42573
1i3dA	146	2.70e+01		a.1.1.2	61587
1uwoA	92	2.71e+01	4icb	a.39.1.2	17174
1top	162	2.71e+01	1ncx	a.39.1.5	17223
1br1B	150	3.07e+01	1wdcC	a.39.1.5	17309
1hrdA	449	3.15e+01	1k89	c.2.1.7	30219
				c.58.1.1	33867
1bgvA	449	3.24e+01	1k89	c.2.1.7	30217
				c.58.1.1	33865
1n3lA	372	3.34e+01		c.26.1.1	79966
1knvA	293	3.41e+01		c.52.1.7	68707
1lvfA	110	3.46e+01		a.47.2.1	74280
1jceA	344	3.60e+01		c.55.1.1	62876
				c.55.1.1	62877
1i7pA	274	3.66e+01		b.43.4.2	66048
				c.25.1.1	66049
1qr0A	228	3.84e+01	1qr0A	d.150.1.1	59038
				d.150.1.1	59039
1exzA	141	3.85e+01	1exzA	a.26.1.2	16877
1k89	449	3.86e+01	1k89	c.2.1.7	30218
				c.58.1.1	33866