# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dceA 567 5.46e-01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1qsaA 618 9.93e-01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1fkmA 396 1.44e+00 1fkmA a.69.2.1 18315 a.69.2.1 18316 1ng6A 148 1.88e+00 a.182.1.1 85670 1babB 146 2.00e+00 1abwA a.1.1.2 15414 1spgB 147 2.02e+00 1cg5B a.1.1.2 15588 1aisB 200 2.10e+00 1aisB a.74.1.2 18384 a.74.1.2 18385 1pi1A 185 2.31e+00 unknown_sccs -762 1h6kA 757 2.37e+00 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1iwhB 146 2.89e+00 a.1.1.2 76883 1p4xA 250 3.42e+00 a.4.5.28 87784 a.4.5.28 87785 1kkcA 221 3.50e+00 a.2.11.1 68660 d.44.1.1 68661 1c02A 166 3.65e+00 1qspA a.24.10.2 16633 1sly 618 3.90e+00 1qsaA a.118.5.1 19184 d.2.1.6 36990 1sedA 117 5.04e+00 1irdB 146 5.17e+00 a.1.1.2 66287 1ngvA 534 5.22e+00 c.111.1.2 85698 1j54A 186 5.36e+00 c.55.3.5 77077 1i3dA 146 5.65e+00 a.1.1.2 61587 1cg5A 141 6.87e+00 1abwA a.1.1.2 15406 1rktA 205 7.11e+00 a.4.1.9 -210 a.121.1.1 -1663 1ssqA 267 7.41e+00 1r9dA 787 7.73e+00 1pbv 195 7.90e+00 1pbv a.118.3.1 19179 1lvaA 258 7.95e+00 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1abv 134 9.45e+00 1abv a.70.1.1 18317 1vduA 172 9.57e+00 unknown_sccs -1651 1ns5A 155 1.03e+01 c.116.1.3 80705 1k30A 368 1.04e+01 c.112.1.1 68067 1cpcA 162 1.10e+01 1cpcA a.1.1.3 15643 1d2zA 108 1.11e+01 1d2zA a.77.1.2 18437 1eqfA 280 1.12e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1v4xB 146 1.14e+01 4crxA 322 1.16e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1k87A 669 1.16e+01 a.176.1.1 77286 c.1.23.2 77287 1p7gA 222 1.27e+01 a.2.11.1 -108 d.44.1.1 -9742 1pbwA 216 1.49e+01 1pbwA a.116.1.1 19103 1pujA 282 1.51e+01 c.37.1.8 88294 2occC 261 1.57e+01 1ocrC f.25.1.1 43520 1v4xA 144 1.65e+01 1exrA 148 1.67e+01 1cll a.39.1.5 17299 1phnA 162 1.73e+01 1cpcA a.1.1.3 15641 1iuqA 367 1.78e+01 c.112.1.1 -8440 1q1fA 151 1.78e+01 2ng1 293 1.81e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1pvaA 110 1.81e+01 1a75A a.39.1.4 17207 2ran 316 1.92e+01 1avc a.65.1.1 18170 1cg5B 141 1.94e+01 1cg5B a.1.1.2 15585 1ls1A 295 2.00e+01 a.24.13.1 78170 c.37.1.10 78171 1top 162 2.13e+01 1ncx a.39.1.5 17223 1iw0A 215 2.17e+01 a.132.1.1 83720 1spgA 144 2.21e+01 1abwA a.1.1.2 15409 1jx4A 352 2.29e+01 unknown_sccs -10188 unknown_sccs -11898 1sek 378 2.29e+01 1sek e.1.1.1 42675 1v54C 261 2.32e+01 f.25.1.1 -12239 1hm6A 346 2.35e+01 1avc a.65.1.1 18147 1j5sA 463 2.37e+01 c.1.9.8 71580 16vpA 366 2.42e+01 16vpA d.180.1.1 42601 1n25A 368 2.46e+01 c.37.1.20 85264 1g1eB 89 2.49e+01 1g1eB a.59.1.1 17931 4tmkA 213 2.53e+01 5tmpA c.37.1.1 31930 1bh9B 89 2.54e+01 1bh9B a.22.1.3 16485 1a8b 318 2.59e+01 1avc a.65.1.1 18171 1n40A 396 2.60e+01 a.104.1.1 79977 1rypJ 204 2.71e+01 d.153.1.4 41878 1j8yF 297 2.72e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1sur 215 2.76e+01 1sur c.26.2.2 31620 1cby 259 2.79e+01 1cby d.103.1.1 40705 1j7nA 776 2.81e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1r8sE 203 2.86e+01 a.118.3.1 -1579 1pz4A 116 2.89e+01 d.106.1.1 -10780 1h2sA 225 3.09e+01 f.13.1.1 76578 1p5zB 263 3.12e+01 c.37.1.1 87815 1gkzA 388 3.17e+01 a.29.5.1 65268 d.122.1.4 65269 1giqA 413 3.24e+01 d.166.1.1 76224 d.166.1.1 76225 1s1hC 192 3.32e+01 1r5zA 323 3.32e+01 unknown_sccs -12289 1i37A 260 3.36e+01 1a28A a.123.1.1 61583 1oxjA 173 3.39e+01 a.60.1.2 87517 a.118.1.13 87518 1rwyA 109 3.40e+01 a.39.1.4 -825 1jboA 162 3.41e+01 a.1.1.3 84150 1sig 339 3.51e+01 1sig a.177.1.1 19068 1ggzA 148 3.56e+01 a.39.1.5 70176 1gzsB 165 3.66e+01 a.168.1.1 76425 1vhrA 184 3.66e+01 1vhrA c.45.1.1 32651 7aatA 401 3.70e+01 1ajsA c.67.1.1 34250 1ouvA 273 3.70e+01 a.118.18.1 -1586 1ezvF 125 3.71e+01 1be3F f.27.1.1 59550 1dvkA 173 3.72e+01 1dvkA a.72.1.1 18319 1kb9G 125 3.74e+01 f.27.1.1 77322 1tag 324 3.83e+01 1cipA a.66.1.1 18197 c.37.1.8 32080 1huw 166 3.92e+01 1huw a.26.1.1 16831