# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mhyB 395 7.03e-01 1mtyB a.25.1.2 16781 1f5qB 252 7.90e-01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1o86A 589 1.53e+00 d.92.1.5 81177 1tlqA 189 2.01e+00 1uedA 406 2.16e+00 a.104.1.1 -1459 1lshA 1056 2.34e+00 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1top 162 2.82e+00 1ncx a.39.1.5 17223 1ssqA 267 3.18e+00 1vk3A 615 3.45e+00 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1xwl 580 3.67e+00 1xwl c.55.3.5 33708 e.8.1.1 43001 1l3sA 580 4.28e+00 c.55.3.5 84521 e.8.1.1 84522 1nk4A 580 4.40e+00 c.55.3.5 -7625 e.8.1.1 -11875 1lnwA 147 6.06e+00 a.4.5.28 78104 1p4xA 250 6.11e+00 a.4.5.28 87784 a.4.5.28 87785 1dxrL 273 6.15e+00 6prcL f.26.1.1 43431 1g8qA 90 6.28e+00 1g8qA a.135.1.1 19621 1dceA 567 6.42e+00 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1ldfA 281 1.13e+01 f.19.1.1 73845 1babB 146 1.14e+01 1abwA a.1.1.2 15414 2pgd 482 1.16e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1jq5A 370 1.32e+01 e.22.1.2 67084 1fx8A 281 1.39e+01 f.19.1.1 43651 1s0pA 176 1.59e+01 unknown_sccs -1156 1ng6A 148 1.61e+01 a.182.1.1 85670 1bg6 359 1.64e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1giqA 413 1.69e+01 d.166.1.1 76224 d.166.1.1 76225 1sly 618 1.72e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1qsaA 618 1.84e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1a6q 382 1.97e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1ggzA 148 2.14e+01 a.39.1.5 70176 1f0jA 377 2.21e+01 1f0jA a.125.1.1 19346 1om2A 95 2.35e+01 1om2A a.23.4.1 16520 1fvkA 189 2.38e+01 1fvkA unknown_sccs -7419 1allA 160 2.38e+01 1qgwC a.1.1.3 15647 1dljA 402 2.38e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1d8dA 377 2.43e+01 1ft1A a.118.6.1 19185 1spgB 147 2.49e+01 1cg5B a.1.1.2 15588 1v61A 132 2.53e+01 2ahjB 212 2.54e+01 2ahjB b.34.4.4 24599 1a4pA 96 2.55e+01 1b4cA a.39.1.2 17176 1acvA 189 2.57e+01 1fvkA unknown_sccs -7428 1j1qA 261 2.57e+01 d.165.1.1 -11546 1vjqA 79 2.69e+01 unknown_sccs -13478 1cb8A 678 2.91e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1t7pA 698 2.98e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1gnwA 211 3.07e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1pu6A 218 3.40e+01 unknown_sccs -1282 1h6pA 203 3.53e+01 a.146.1.1 60690 1jk0A 419 3.54e+01 a.25.1.2 63142 1pfvA 551 3.59e+01 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1irdB 146 3.67e+01 a.1.1.2 66287 1sur 215 3.68e+01 1sur c.26.2.2 31620 1wdcB 156 3.68e+01 1wdcB a.39.1.5 17302 1e8aA 91 3.87e+01 1b4cA a.39.1.2 17188 1sr7A 259 3.91e+01 1a28A 256 3.92e+01 1a28A a.123.1.1 19290 1ak0 270 3.95e+01 1ak0 a.124.1.2 19345 1jkoC 52 3.98e+01 a.4.1.2 66809 1rwyA 109 4.00e+01 a.39.1.4 -825