# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1om2A 95 6.97e-02 1om2A a.23.4.1 16520 1rtwA 220 1.16e-01 unknown_sccs -1904 256bA 106 7.83e-01 256bA a.24.3.1 16539 1or4A 178 8.81e-01 a.1.1.2 -91 1ezwA 349 9.68e-01 1ezwA c.1.16.3 29558 1dhn 121 1.26e+00 1dhn d.96.1.3 40663 1t6t1 118 1.52e+00 1bkdS 439 2.34e+00 1bkdS a.117.1.1 19111 1b5l 172 2.48e+00 1b5l a.26.1.3 16900 1iuqA 367 2.61e+00 c.112.1.1 -8440 1uzeA 589 2.97e+00 1hrdA 449 3.31e+00 1k89 c.2.1.7 30219 c.58.1.1 33867 1bgvA 449 3.35e+00 1k89 c.2.1.7 30217 c.58.1.1 33865 1nvvS 481 3.64e+00 a.117.1.1 86279 1k2yX 463 4.05e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1ni3A 392 4.17e+00 c.37.1.8 80531 d.15.10.2 80532 1vhrA 184 4.55e+00 1vhrA c.45.1.1 32651 1o86A 589 4.74e+00 d.92.1.5 81177 1wmuB 146 4.78e+00 1m6yA 301 5.18e+00 a.60.13.1 78716 c.66.1.23 78717 1r44A 202 5.42e+00 1e79G 272 6.23e+00 1e79G c.49.2.1 33158 1ngvA 534 6.27e+00 c.111.1.2 85698 1k30A 368 6.29e+00 c.112.1.1 68067 1pvaA 110 6.75e+00 1a75A a.39.1.4 17207 1ls1A 295 7.78e+00 a.24.13.1 78170 c.37.1.10 78171 1gxqA 106 9.21e+00 a.4.6.1 70721 1p5dX 463 9.32e+00 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1qlpA 394 1.01e+01 1ovaA e.1.1.1 42628 2hmzA 113 1.01e+01 2mhr a.24.4.1 16564 1i4yA 114 1.09e+01 2mhr a.24.4.1 61738 1q7zA 566 1.09e+01 c.1.21.2 -5638 c.1.26.1 -5666 1sur 215 1.09e+01 1sur c.26.2.2 31620 1bf6A 291 1.13e+01 1pscA c.1.9.3 29065 1m7gA 211 1.13e+01 c.37.1.4 78724 1cqxA 403 1.14e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1c3yA 108 1.15e+01 1c3yA a.39.2.1 17387 1gz8A 299 1.18e+01 d.144.1.7 83405 1n3kA 130 1.23e+01 a.77.1.4 79965 1i1iP 681 1.40e+01 1i1iP d.92.1.5 40297 1nmeA 146 1.44e+01 c.17.1.1 85874 1d6jA 211 1.46e+01 1d6jA c.37.1.4 31940 1a92A 50 1.51e+01 1a92A h.4.6.1 45791 1s0pA 176 1.53e+01 unknown_sccs -1156 2e2aA 105 1.62e+01 a.7.2.1 88499 1pjhA 280 1.63e+01 c.14.1.3 -6229 1j7nA 776 1.64e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1j6rA 214 1.71e+01 d.173.1.2 71598 1nb5I 98 1.74e+01 d.17.1.2 80381 1e2aA 105 1.75e+01 1e2aA a.7.2.1 16322 1cy5A 97 1.75e+01 1cy5A a.77.1.3 18430 1oxjA 173 1.81e+01 a.60.1.2 87517 a.118.1.13 87518 1s2xA 206 1.96e+01 1omwA 689 2.01e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1hnuA 280 2.01e+01 1hnoA c.14.1.3 61096 2hmqA 113 2.01e+01 2mhr a.24.4.1 16568 1dmmA 131 2.11e+01 1opy d.17.4.3 38114 1opy 131 2.13e+01 1opy d.17.4.3 38113 1b8aA 438 2.24e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1dbqA 289 2.35e+01 1qpzA c.93.1.1 35666 1tljA 213 2.36e+01 1i7pA 274 2.36e+01 b.43.4.2 66048 c.25.1.1 66049 1q18A 332 2.37e+01 1rj1A 151 2.41e+01 unknown_sccs -753 1aq0A 306 2.43e+01 1aq0A c.1.8.3 28842 1e8aA 91 2.48e+01 1b4cA a.39.1.2 17188 1g8qA 90 2.50e+01 1g8qA a.135.1.1 19621 1ovnA 248 2.51e+01 a.71.1.1 -1096 c.47.1.7 -7477 1mkp 144 2.54e+01 1vhrA c.45.1.1 32654 1bg6 359 2.60e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 2ng1 293 2.66e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1na3A 91 2.69e+01 k.38.1.1 85481 1pi1A 185 2.79e+01 unknown_sccs -762 1m12A 84 2.91e+01 a.64.1.1 84745 1e5kA 201 2.92e+01 1fr9A c.68.1.8 34578 1khbA 625 2.96e+01 c.91.1.1 68606 c.109.1.1 68607 1h6kA 757 3.02e+01 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1kn1A 160 3.05e+01 a.1.1.3 77455 4icb 76 3.06e+01 4icb a.39.1.1 17145 1iyxA 432 3.08e+01 c.1.11.1 83815 d.54.1.1 83816 1nf1A 333 3.10e+01 1nf1A a.116.1.2 19110 1elrA 131 3.20e+01 1a17 a.118.8.1 19209 1hleA 345 3.20e+01 1ovaA e.1.1.1 42618 1ng6A 148 3.47e+01 a.182.1.1 85670 1dusA 194 3.47e+01 1dusA c.66.1.4 34182 1o98A 511 3.51e+01 c.105.1.1 86684 c.76.1.3 86685 1eqjA 511 3.55e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1v8cA 168 3.64e+01 d.15.3.1 -9175 unknown_sccs -11012 1ocvA 125 3.66e+01 d.17.4.3 86810 1pdo 135 3.76e+01 1pdo c.54.1.1 33376 1g2rA 100 3.83e+01 1g2rA d.192.1.1 60231 1ithA 141 3.86e+01 1ithA a.1.1.2 15623 1em9A 154 3.89e+01 1d1dA a.73.1.1 18333 1hy7A 173 3.96e+01 d.92.1.11 65957 1m6jA 261 3.97e+01 c.1.1.1 78693