# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f5qB 252 9.07e-01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1o86A 589 1.39e+00 d.92.1.5 81177 1top 162 1.90e+00 1ncx a.39.1.5 17223 1mhyB 395 3.85e+00 1mtyB a.25.1.2 16781 1p4xA 250 6.47e+00 a.4.5.28 87784 a.4.5.28 87785 1qsaA 618 6.83e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1ngvA 534 7.01e+00 c.111.1.2 85698 1lnwA 147 8.79e+00 a.4.5.28 78104 1xwl 580 9.05e+00 1xwl c.55.3.5 33708 e.8.1.1 43001 1vk3A 615 9.30e+00 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1g8qA 90 1.04e+01 1g8qA a.135.1.1 19621 1lis 136 1.04e+01 1lis a.19.1.1 16406 2lisA 136 1.04e+01 1lis a.19.1.1 16405 1nk4A 580 1.06e+01 c.55.3.5 -7625 e.8.1.1 -11875 1o98A 511 1.12e+01 c.105.1.1 86684 c.76.1.3 86685 1eqjA 511 1.13e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1sly 618 1.14e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1tlqA 189 1.16e+01 1dxrL 273 1.35e+01 6prcL f.26.1.1 43431 2occA 514 1.37e+01 2occA f.24.1.1 43518 1rtwA 220 1.37e+01 unknown_sccs -1904 1b8aA 438 1.39e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1ffyA 917 1.41e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1q0gA 117 1.43e+01 1lshA 1056 1.45e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1be3G 81 1.48e+01 1be3G f.23.13.1 43669 1l3sA 580 1.48e+01 c.55.3.5 84521 e.8.1.1 84522 1gnwA 211 1.57e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1ssqA 267 1.60e+01 1llp 343 1.74e+01 1arv a.93.1.1 18578 1j54A 186 1.89e+01 c.55.3.5 77077 1obbA 480 1.92e+01 c.2.1.5 86760 d.162.1.2 86761 1rwyA 109 1.94e+01 a.39.1.4 -825 1v54A 514 1.96e+01 f.24.1.1 -12235 1dhn 121 2.16e+01 1dhn d.96.1.3 40663 1om2A 95 2.17e+01 1om2A a.23.4.1 16520 1dvkA 173 2.21e+01 1dvkA a.72.1.1 18319 1fx8A 281 2.34e+01 f.19.1.1 43651 1v61A 132 2.44e+01 1m6yA 301 2.46e+01 a.60.13.1 78716 c.66.1.23 78717 1ldfA 281 2.59e+01 f.19.1.1 73845 2pgd 482 2.69e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1s0pA 176 2.72e+01 unknown_sccs -1156 1i50B 1224 2.74e+01 e.29.1.1 61755 1h6pA 203 2.74e+01 a.146.1.1 60690 1v9dA 340 3.03e+01 unknown_sccs -1762 1l0lG 81 3.04e+01 f.23.13.1 84493 1dceA 567 3.08e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1vjqA 79 3.08e+01 unknown_sccs -13478 1allA 160 3.09e+01 1qgwC a.1.1.3 15647 1fm2A 169 3.21e+01 1fm2A d.153.1.2 59877 1sur 215 3.22e+01 1sur c.26.2.2 31620 1bg6 359 3.30e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1ca1 370 3.46e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1kafA 108 3.58e+01 d.199.1.1 68372 1h2sA 225 3.67e+01 f.13.1.1 76578 1ls1A 295 3.68e+01 a.24.13.1 78170 c.37.1.10 78171 1nlqA 108 3.85e+01 b.121.3.1 85853