# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1giqA 413 9.24e-01 d.166.1.1 76224 d.166.1.1 76225 1o86A 589 1.16e+00 d.92.1.5 81177 1f5qB 252 2.32e+00 1f5qB a.74.1.1 18362 a.74.1.1 18363 1hz4A 373 2.38e+00 a.118.8.2 65960 1babB 146 2.57e+00 1abwA a.1.1.2 15414 1top 162 2.65e+00 1ncx a.39.1.5 17223 1p4xA 250 2.68e+00 a.4.5.28 87784 a.4.5.28 87785 1qsaA 618 2.87e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1a6q 382 3.26e+00 1a6q a.159.1.1 75801 d.219.1.1 75802 1f0jA 377 3.66e+00 1f0jA a.125.1.1 19346 1g8qA 90 3.79e+00 1g8qA a.135.1.1 19621 1fkmA 396 4.12e+00 1fkmA a.69.2.1 18315 a.69.2.1 18316 1ls1A 295 4.24e+00 a.24.13.1 78170 c.37.1.10 78171 1dvkA 173 4.58e+00 1dvkA a.72.1.1 18319 2occA 514 5.05e+00 2occA f.24.1.1 43518 1v9dA 340 5.14e+00 unknown_sccs -1762 1dceA 567 5.73e+00 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1om2A 95 5.97e+00 1om2A a.23.4.1 16520 1aisB 200 6.32e+00 1aisB a.74.1.2 18384 a.74.1.2 18385 1qciA 262 6.41e+00 1qi7A d.165.1.1 42201 1tlqA 189 7.01e+00 1v54A 514 7.01e+00 f.24.1.1 -12235 1i37A 260 7.22e+00 1a28A a.123.1.1 61583 1mhyB 395 7.23e+00 1mtyB a.25.1.2 16781 1lshA 1056 8.12e+00 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1lnwA 147 8.17e+00 a.4.5.28 78104 1dxrL 273 8.41e+00 6prcL f.26.1.1 43431 1ka2A 499 8.56e+00 d.92.1.5 77305 1s9rA 410 8.64e+00 unknown_sccs -10989 1lis 136 8.76e+00 1lis a.19.1.1 16406 2lisA 136 8.76e+00 1lis a.19.1.1 16405 1fxxA 482 9.06e+00 1fxxA c.55.3.5 33726 1irdB 146 9.15e+00 a.1.1.2 66287 1sly 618 9.60e+00 1qsaA a.118.5.1 19184 d.2.1.6 36990 1dkzA 219 9.63e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1ssqA 267 1.03e+01 1pfvA 551 1.05e+01 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1j7lA 264 1.05e+01 d.144.1.6 62697 2ng1 293 1.07e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1f4lA 551 1.07e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1j1qA 261 1.08e+01 d.165.1.1 -11546 1obbA 480 1.16e+01 c.2.1.5 86760 d.162.1.2 86761 1bg6 359 1.17e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1gntA 553 1.18e+01 e.26.1.1 70290 1e2uA 553 1.21e+01 1e1dA e.26.1.1 43362 1sur 215 1.24e+01 1sur c.26.2.2 31620 1ioj 57 1.37e+01 1ioj j.39.1.1 46293 1vduA 172 1.39e+01 unknown_sccs -1651 1dhn 121 1.39e+01 1dhn d.96.1.3 40663 1guxB 152 1.41e+01 1guxB a.74.1.3 18389 1l0lG 81 1.47e+01 f.23.13.1 84493 1rtwA 220 1.48e+01 unknown_sccs -1904 1qazA 351 1.61e+01 1qazA a.102.3.1 18848 1hr6B 443 1.61e+01 1be3A d.185.1.1 61166 d.185.1.1 61167 1oyjA 231 1.62e+01 a.45.1.1 87597 c.47.1.5 87598 1csh 435 1.63e+01 1csh a.103.1.1 18880 1kpsB 171 1.66e+01 a.118.12.1 68787 1qmqA 414 1.70e+01 1phd a.104.1.1 18907 1ak0 270 1.70e+01 1ak0 a.124.1.2 19345 1uedA 406 1.72e+01 a.104.1.1 -1459 1or0A 160 1.72e+01 d.153.1.2 -11415 1v61A 132 1.73e+01 1s0pA 176 1.74e+01 unknown_sccs -1156 1fm2A 169 1.78e+01 1fm2A d.153.1.2 59877 2pgd 482 1.81e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1iwhB 146 1.82e+01 a.1.1.2 76883 1e8aA 91 1.87e+01 1b4cA a.39.1.2 17188 1nt2B 258 1.87e+01 a.183.1.1 86150 1be3G 81 1.87e+01 1be3G f.23.13.1 43669 1r9dA 787 1.88e+01 1fmjA 351 1.90e+01 c.37.1.5 59879 1jq5A 370 1.91e+01 e.22.1.2 67084 1g2rA 100 1.93e+01 1g2rA d.192.1.1 60231 1spgB 147 1.94e+01 1cg5B a.1.1.2 15588 1f45B 197 1.97e+01 1f45B a.26.1.1 59642 1kq3A 376 1.98e+01 e.22.1.2 68790 1h6pA 203 2.04e+01 a.146.1.1 60690 1cpt 412 2.04e+01 1cpt a.104.1.1 18968 1h2sA 225 2.07e+01 f.13.1.1 76578 1cg5A 141 2.12e+01 1abwA a.1.1.2 15406 1dj8A 89 2.23e+01 1bg8A a.57.1.1 17919 1j6rA 214 2.26e+01 d.173.1.2 71598 4ubpA 101 2.29e+01 1ubpA d.8.1.1 37352 1lfkA 398 2.31e+01 a.104.1.1 77926 1pxgA 382 2.31e+01 c.1.20.1 -5616 1vjqA 79 2.36e+01 unknown_sccs -13478 1i50B 1224 2.37e+01 e.29.1.1 61755 1l2tA 235 2.42e+01 c.37.1.12 73514 1bmdA 327 2.44e+01 1bmdA c.2.1.5 30139 d.162.1.1 42106 1qqeA 292 2.51e+01 1qqeA a.118.8.1 19210 1kn1A 160 2.51e+01 a.1.1.3 77455 1r5yA 386 2.55e+01 c.1.20.1 -5626 1pud 386 2.59e+01 1pud c.1.20.1 29658 1gnwA 211 2.61e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1guxA 218 2.73e+01 1guxA a.74.1.3 18388 1a28A 256 2.87e+01 1a28A a.123.1.1 19290 1pi1A 185 2.88e+01 unknown_sccs -762 1h99A 224 2.90e+01 a.142.1.1 60814 a.142.1.1 60815 1j54A 186 2.94e+01 c.55.3.5 77077 1k1vA 41 2.96e+01 a.37.1.1 71999 1rypL 212 2.99e+01 d.153.1.4 41880 1mdl 359 3.01e+01 2mnr c.1.11.2 29247 d.54.1.1 38891 1j8mF 297 3.03e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1svsA 353 3.05e+01 2mnr 357 3.08e+01 2mnr c.1.11.2 29245 d.54.1.1 38889 1otkA 249 3.15e+01 a.25.1.2 -695 1sr7A 259 3.21e+01 1a99A 344 3.24e+01 1pot c.94.1.1 35812 1jk0A 419 3.25e+01 a.25.1.2 63142 1tfe 145 3.26e+01 1tfe d.43.1.1 38680 1t7pA 698 3.33e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1ngvA 534 3.34e+01 c.111.1.2 85698 1ur5A 309 3.42e+01 c.2.1.5 -5910 d.162.1.1 -11477 1v4xB 146 3.49e+01 1jalA 363 3.51e+01 c.37.1.8 84138 d.15.10.2 84139 1xwl 580 3.57e+01 1xwl c.55.3.5 33708 e.8.1.1 43001 1ohuA 175 3.57e+01 f.1.4.1 -12058 1b3uA 588 3.57e+01 1b3uA a.118.1.2 19135 1i3dA 146 3.65e+01 a.1.1.2 61587 1a4pA 96 3.68e+01 1b4cA a.39.1.2 17176 1fioA 196 3.74e+01 1fioA a.47.2.1 17773 1uruA 244 3.77e+01 unknown_sccs -13001 1mw5A 187 3.78e+01 unknown_sccs -11213 1p5sA 203 3.81e+01 a.40.1.1 -900 1j8yF 297 3.83e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1p5zB 263 3.98e+01 c.37.1.1 87815 1b8aA 438 3.99e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765