# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o86A 589 6.58e-02 d.92.1.5 81177 1m6yA 301 2.05e-01 a.60.13.1 78716 c.66.1.23 78717 1om2A 95 7.71e-01 1om2A a.23.4.1 16520 1ssqA 267 8.57e-01 1mhyB 395 9.82e-01 1mtyB a.25.1.2 16781 1rtwA 220 1.18e+00 unknown_sccs -1904 1dhn 121 1.48e+00 1dhn d.96.1.3 40663 1top 162 1.70e+00 1ncx a.39.1.5 17223 1bgvA 449 3.13e+00 1k89 c.2.1.7 30217 c.58.1.1 33865 1ad3A 452 3.19e+00 1ad3A c.82.1.1 35335 1fkmA 396 3.19e+00 1fkmA a.69.2.1 18315 a.69.2.1 18316 1sly 618 3.59e+00 1qsaA a.118.5.1 19184 d.2.1.6 36990 1bg6 359 3.86e+00 1bg6 a.100.1.5 18810 c.2.1.6 30214 1g8qA 90 4.08e+00 1g8qA a.135.1.1 19621 1j6rA 214 4.18e+00 d.173.1.2 71598 1giqA 413 4.57e+00 d.166.1.1 76224 d.166.1.1 76225 1f5qB 252 4.75e+00 1f5qB a.74.1.1 18362 a.74.1.1 18363 1pfvA 551 4.83e+00 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1hrdA 449 5.27e+00 1k89 c.2.1.7 30219 c.58.1.1 33867 1uedA 406 5.54e+00 a.104.1.1 -1459 1tlqA 189 5.78e+00 1h6kA 757 6.07e+00 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1jalA 363 6.29e+00 c.37.1.8 84138 d.15.10.2 84139 1pud 386 6.38e+00 1pud c.1.20.1 29658 1q0gA 117 6.39e+00 1ak0 270 6.43e+00 1ak0 a.124.1.2 19345 2pgd 482 6.51e+00 2pgd a.100.1.1 18778 c.2.1.6 30190 1r5yA 386 6.66e+00 c.1.20.1 -5626 1pxgA 382 6.74e+00 c.1.20.1 -5616 1be3G 81 6.85e+00 1be3G f.23.13.1 43669 1f4lA 551 7.29e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1dxrL 273 7.29e+00 6prcL f.26.1.1 43431 1qsaA 618 7.52e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1kb9G 125 7.52e+00 f.27.1.1 77322 1hz4A 373 7.52e+00 a.118.8.2 65960 1ezvF 125 7.77e+00 1be3F f.27.1.1 59550 1cxzB 86 8.06e+00 1cxzB a.2.6.1 15705 1phnB 172 8.47e+00 1qgwC a.1.1.3 15642 1k87A 669 9.14e+00 a.176.1.1 77286 c.1.23.2 77287 256bA 106 9.31e+00 256bA a.24.3.1 16539 1huw 166 9.32e+00 1huw a.26.1.1 16831 1lfkA 398 1.03e+01 a.104.1.1 77926 1l0lG 81 1.05e+01 f.23.13.1 84493 1dceA 567 1.06e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1qgrA 876 1.09e+01 1qgrA a.118.1.1 19119 1ngmB 72 1.09e+01 j.104.1.1 85687 1lnwA 147 1.10e+01 a.4.5.28 78104 1elrA 131 1.12e+01 1a17 a.118.8.1 19209 1pbwA 216 1.12e+01 1pbwA a.116.1.1 19103 1tfr 305 1.14e+01 1tfr a.60.7.1 18081 c.120.1.2 33351 1hr6B 443 1.15e+01 1be3A d.185.1.1 61166 d.185.1.1 61167 1bf5A 545 1.19e+01 1bg1A a.47.1.1 17766 b.2.5.5 22460 d.93.1.1 40526 1jm6A 407 1.25e+01 a.29.5.1 66876 d.122.1.4 66877 1k0wA 231 1.32e+01 c.74.1.1 77220 1knzA 164 1.35e+01 e.34.1.1 68709 1kn1A 160 1.40e+01 a.1.1.3 77455 1e8yA 966 1.48e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1rp4A 389 1.55e+01 1j54A 186 1.61e+01 c.55.3.5 77077 1i50B 1224 1.62e+01 e.29.1.1 61755 1pi1A 185 1.67e+01 unknown_sccs -762 1c24A 263 1.72e+01 1c24A d.127.1.1 41148 1dhs 344 1.75e+01 1dhs c.31.1.1 31727 1qc7A 101 1.76e+01 1qc7A a.118.14.1 18456 1hh8A 213 1.76e+01 1e96B a.118.8.1 61042 1gnwA 211 1.78e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1csh 435 1.82e+01 1csh a.103.1.1 18880 1fm2A 169 1.86e+01 1fm2A d.153.1.2 59877 1oxjA 173 1.89e+01 a.60.1.2 87517 a.118.1.13 87518 1vk3A 615 1.89e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1fioA 196 1.92e+01 1fioA a.47.2.1 17773 1or0A 160 1.95e+01 d.153.1.2 -11415 1e8aA 91 2.05e+01 1b4cA a.39.1.2 17188 1cnt1 187 2.09e+01 1cnt3 1e7uA 961 2.10e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1po5A 476 2.10e+01 a.104.1.1 -1467 1am7A 158 2.16e+01 1am7A d.2.1.4 36981 1allA 160 2.16e+01 1qgwC a.1.1.3 15647 2ahjB 212 2.18e+01 2ahjB b.34.4.4 24599 1g2rA 100 2.21e+01 1g2rA d.192.1.1 60231 1o0wA 252 2.23e+01 a.149.1.1 80751 d.50.1.1 80752 1s0pA 176 2.31e+01 unknown_sccs -1156 1j8yF 297 2.36e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1e7lA 157 2.43e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1dvkA 173 2.45e+01 1dvkA a.72.1.1 18319 1ho8A 480 2.55e+01 1ho8A a.118.1.9 61107 1ls1A 295 2.61e+01 a.24.13.1 78170 c.37.1.10 78171 1qr0A 228 2.64e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1i37A 260 2.64e+01 1a28A a.123.1.1 61583 1b0nB 57 2.65e+01 1b0nB a.34.1.1 17002 1na3A 91 2.65e+01 k.38.1.1 85481 1nznA 126 2.68e+01 a.118.8.1 -1616 1upkA 341 2.71e+01 unknown_sccs -1565 1ciy 590 2.77e+01 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1reoA 486 2.86e+01 c.3.1.2 -5997 d.16.1.5 -9217 1lshA 1056 2.88e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1eca 136 2.91e+01 1flp a.1.1.2 15209 1h99A 224 2.93e+01 a.142.1.1 60814 a.142.1.1 60815 1ngvA 534 2.97e+01 c.111.1.2 85698 1k8tA 510 3.09e+01 e.41.1.1 68316 1cy5A 97 3.10e+01 1cy5A a.77.1.3 18430 1khyA 148 3.18e+01 a.174.1.1 77410 1oyjA 231 3.19e+01 a.45.1.1 87597 c.47.1.5 87598 1m12A 84 3.20e+01 a.64.1.1 84745 1j5wA 298 3.20e+01 d.104.1.1 71589 1h6pA 203 3.20e+01 a.146.1.1 60690 1n4qB 377 3.31e+01 a.102.4.3 -1424 1orsC 132 3.37e+01 f.14.1.1 87353 1k6xA 352 3.38e+01 c.2.1.2 68238 1h5zA 455 3.39e+01 a.104.1.1 -1456 1mngA 203 3.45e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1a8vA 121 3.46e+01 1a62 a.140.3.1 64712 b.40.4.5 64713 2btvA 901 3.47e+01 2btvA e.28.1.1 43376 1eyhA 144 3.52e+01 1eduA a.118.9.1 19214 1elqA 390 3.54e+01 1elqA c.67.1.3 34436 1a8h 500 3.65e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1pw4A 451 3.75e+01 unknown_sccs -12259 1uzcA 71 3.77e+01 a.159.2.1 -339 1j8mF 297 3.83e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1k1vA 41 3.83e+01 a.37.1.1 71999 1nlqA 108 3.90e+01 b.121.3.1 85853 1rypL 212 3.94e+01 d.153.1.4 41880 1nt2B 258 3.94e+01 a.183.1.1 86150 1a6m 151 3.96e+01 1a6m a.1.1.2 15018