# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o86A 589 3.96e-02 d.92.1.5 81177 1rtwA 220 1.79e-01 unknown_sccs -1904 1m6yA 301 4.23e-01 a.60.13.1 78716 c.66.1.23 78717 1ssqA 267 5.66e-01 1om2A 95 1.10e+00 1om2A a.23.4.1 16520 1dhn 121 1.33e+00 1dhn d.96.1.3 40663 1h6pA 203 1.58e+00 a.146.1.1 60690 1fkmA 396 1.92e+00 1fkmA a.69.2.1 18315 a.69.2.1 18316 1g8qA 90 2.03e+00 1g8qA a.135.1.1 19621 1ad3A 452 2.22e+00 1ad3A c.82.1.1 35335 2lisA 136 2.29e+00 1lis a.19.1.1 16405 1i37A 260 2.87e+00 1a28A a.123.1.1 61583 1guxB 152 2.91e+00 1guxB a.74.1.3 18389 1h6kA 757 3.21e+00 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1q0gA 117 3.33e+00 1hz4A 373 3.46e+00 a.118.8.2 65960 1lis 136 3.51e+00 1lis a.19.1.1 16406 1bgvA 449 4.00e+00 1k89 c.2.1.7 30217 c.58.1.1 33865 1top 162 4.10e+00 1ncx a.39.1.5 17223 1e8aA 91 4.15e+00 1b4cA a.39.1.2 17188 1ls1A 295 4.30e+00 a.24.13.1 78170 c.37.1.10 78171 1mhyB 395 5.28e+00 1mtyB a.25.1.2 16781 1uedA 406 5.56e+00 a.104.1.1 -1459 1hrdA 449 5.85e+00 1k89 c.2.1.7 30219 c.58.1.1 33867 256bA 106 6.30e+00 256bA a.24.3.1 16539 1a6q 382 6.53e+00 1a6q a.159.1.1 75801 d.219.1.1 75802 1c24A 263 7.63e+00 1c24A d.127.1.1 41148 1p4xA 250 7.74e+00 a.4.5.28 87784 a.4.5.28 87785 2occA 514 8.10e+00 2occA f.24.1.1 43518 1v9dA 340 8.32e+00 unknown_sccs -1762 1pxgA 382 8.54e+00 c.1.20.1 -5616 1ak0 270 8.86e+00 1ak0 a.124.1.2 19345 1qsaA 618 8.98e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1qr0A 228 9.04e+00 1qr0A d.150.1.1 59038 d.150.1.1 59039 1pjr 724 9.08e+00 1pjr c.37.1.19 32391 c.37.1.19 32392 1ngmB 72 9.45e+00 j.104.1.1 85687 1pud 386 9.45e+00 1pud c.1.20.1 29658 1r5yA 386 9.46e+00 c.1.20.1 -5626 1tfr 305 9.47e+00 1tfr a.60.7.1 18081 c.120.1.2 33351 2ng1 293 1.00e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1cxzB 86 1.04e+01 1cxzB a.2.6.1 15705 2pgd 482 1.08e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1k8tA 510 1.08e+01 e.41.1.1 68316 1j8mF 297 1.11e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1ezvF 125 1.12e+01 1be3F f.27.1.1 59550 1kb9G 125 1.12e+01 f.27.1.1 77322 1s0pA 176 1.16e+01 unknown_sccs -1156 1tfe 145 1.20e+01 1tfe d.43.1.1 38680 1i50B 1224 1.23e+01 e.29.1.1 61755 1gxqA 106 1.28e+01 a.4.6.1 70721 1ho8A 480 1.31e+01 1ho8A a.118.1.9 61107 1v54A 514 1.32e+01 f.24.1.1 -12235 1cy5A 97 1.32e+01 1cy5A a.77.1.3 18430 1elrA 131 1.32e+01 1a17 a.118.8.1 19209 1s35A 214 1.32e+01 a.7.1.1 -391 a.7.1.1 -392 1f5qB 252 1.33e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1fm2A 169 1.33e+01 1fm2A d.153.1.2 59877 1nt2B 258 1.35e+01 a.183.1.1 86150 1j8yF 297 1.39e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1vduA 172 1.39e+01 unknown_sccs -1651 1j6rA 214 1.42e+01 d.173.1.2 71598 1hh8A 213 1.43e+01 1e96B a.118.8.1 61042 1j7nA 776 1.44e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1ezfA 340 1.46e+01 1ezfA a.128.1.2 19440 1sur 215 1.53e+01 1sur c.26.2.2 31620 1vjqA 79 1.55e+01 unknown_sccs -13478 1hg4A 279 1.56e+01 1lbd a.123.1.1 19333 1hr6B 443 1.61e+01 1be3A d.185.1.1 61166 d.185.1.1 61167 1am7A 158 1.63e+01 1am7A d.2.1.4 36981 1k0wA 231 1.66e+01 c.74.1.1 77220 1rxxA 421 1.69e+01 unknown_sccs -10982 1lnwA 147 1.72e+01 a.4.5.28 78104 2ahjB 212 1.75e+01 2ahjB b.34.4.4 24599 1kz7A 353 1.79e+01 a.87.1.1 73333 b.55.1.1 73334 1sly 618 1.82e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1e7lA 157 1.85e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1k1vA 41 1.87e+01 a.37.1.1 71999 1f0jA 377 1.92e+01 1f0jA a.125.1.1 19346 1m1nB 522 1.96e+01 c.92.2.3 78418 1or0A 160 1.96e+01 d.153.1.2 -11415 1bmdA 327 1.99e+01 1bmdA c.2.1.5 30139 d.162.1.1 42106 1mojA 182 2.01e+01 a.25.1.1 -669 1guxA 218 2.06e+01 1guxA a.74.1.3 18388 1pbwA 216 2.07e+01 1pbwA a.116.1.1 19103 1qgrA 876 2.11e+01 1qgrA a.118.1.1 19119 1bg6 359 2.12e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1dkzA 219 2.16e+01 1dkzA unknown_sccs -445 unknown_sccs -3060 1kxpD 458 2.18e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1pq9A 253 2.35e+01 a.123.1.1 -1687 1jm6A 407 2.35e+01 a.29.5.1 66876 d.122.1.4 66877 1o5hA 214 2.37e+01 unknown_sccs -1078 1khyA 148 2.43e+01 a.174.1.1 77410 1e8yA 966 2.45e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1h99A 224 2.46e+01 a.142.1.1 60814 a.142.1.1 60815 1na3A 91 2.57e+01 k.38.1.1 85481 1pjhA 280 2.62e+01 c.14.1.3 -6229 1f4lA 551 2.70e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1ng6A 148 2.75e+01 a.182.1.1 85670 1eca 136 2.75e+01 1flp a.1.1.2 15209 1gnwA 211 2.77e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1hnuA 280 2.85e+01 1hnoA c.14.1.3 61096 1pfvA 551 2.86e+01 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1hw5A 210 2.87e+01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1k87A 669 2.95e+01 a.176.1.1 77286 c.1.23.2 77287 1bdmA 327 2.96e+01 1bmdA c.2.1.5 30137 d.162.1.1 42104 1zymA 258 3.05e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1g2rA 100 3.07e+01 1g2rA d.192.1.1 60231 1iw0A 215 3.11e+01 a.132.1.1 83720 1rypL 212 3.12e+01 d.153.1.4 41880 1ezwA 349 3.16e+01 1ezwA c.1.16.3 29558 1oyjA 231 3.19e+01 a.45.1.1 87597 c.47.1.5 87598 1jipA 403 3.22e+01 a.104.1.1 66748 1lfkA 398 3.25e+01 a.104.1.1 77926 1jalA 363 3.25e+01 c.37.1.8 84138 d.15.10.2 84139 1k6xA 352 3.40e+01 c.2.1.2 68238 1d9uA 154 3.41e+01 1am7A d.2.1.4 59111 1giqA 413 3.45e+01 d.166.1.1 76224 d.166.1.1 76225 1oxjA 173 3.49e+01 a.60.1.2 87517 a.118.1.13 87518 1eqjA 511 3.60e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1pi1A 185 3.61e+01 unknown_sccs -762 1e1hB 174 3.61e+01 1o7tA 309 3.62e+01 c.94.1.1 86645 1g2nA 264 3.66e+01 1lbd a.123.1.1 60227 1a4pA 96 3.69e+01 1b4cA a.39.1.2 17176 1hzdA 272 3.71e+01 c.14.1.3 65969 1kn1A 160 3.77e+01 a.1.1.3 77455 1uruA 244 3.80e+01 unknown_sccs -13001 1anv 356 3.82e+01 1anv a.54.1.1 17890 g.51.1.1 45365 g.51.1.1 45371 1rdr 461 3.85e+01 1rdr e.8.1.4 43116 1dxrL 273 3.90e+01 6prcL f.26.1.1 43431 1adt 356 3.92e+01 1anv a.54.1.1 17887 g.51.1.1 45362 g.51.1.1 45368