# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1or4A	178	5.81e+00		a.1.1.2	-91
1e79G	272	7.42e+00	1e79G	c.49.2.1	33158
1b5l	172	9.97e+00	1b5l	a.26.1.3	16900
1om2A	95	1.04e+01	1om2A	a.23.4.1	16520
1k30A	368	1.06e+01		c.112.1.1	68067
1huw	166	1.14e+01	1huw	a.26.1.1	16831
1iuqA	367	1.21e+01		c.112.1.1	-8440
1g8qA	90	1.24e+01	1g8qA	a.135.1.1	19621
256bA	106	1.26e+01	256bA	a.24.3.1	16539
2end	138	1.33e+01	2end	a.18.1.1	16400
1h6tA	291	1.33e+01		b.1.18.15	65686
				c.10.2.1	65687
1m6jA	261	1.45e+01		c.1.1.1	78693
1ngvA	534	1.47e+01		c.111.1.2	85698
1bgvA	449	1.74e+01	1k89	c.2.1.7	30217
				c.58.1.1	33865
1nvvS	481	1.91e+01		a.117.1.1	86279
1f2tA	149	1.99e+01	1f2tA	c.37.1.12	32373
1ezwA	349	2.26e+01	1ezwA	c.1.16.3	29558
1hrdA	449	2.42e+01	1k89	c.2.1.7	30219
				c.58.1.1	33867
1d8bA	81	2.75e+01	1d8bA	a.60.8.1	18094
1v0dA	329	2.79e+01			
1dar	691	2.84e+01	1dar	b.43.3.1	25707
				c.37.1.8	32142
				d.14.1.1	37547
				d.58.11.1	39300
1i7pA	274	3.03e+01		b.43.4.2	66048
				c.25.1.1	66049
1mw5A	187	3.14e+01		unknown_sccs	-11213
1n2aA	201	3.27e+01		a.45.1.1	-938
				c.47.1.5	-7463
1kfwA	435	3.33e+01		c.1.8.5	77376
				d.26.3.1	77377
1o86A	589	3.43e+01		d.92.1.5	81177
1dhn	121	3.48e+01	1dhn	d.96.1.3	40663
1a0fA	201	3.57e+01	1a0fA	a.45.1.1	17737
				c.47.1.5	33031
7aatA	401	3.60e+01	1ajsA	c.67.1.1	34250