PFRMAT RR
TARGET T0248
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MINKPNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDK
VMELVKQKDFKTAQSRCEEELAAPYLPKPLVSFFQSLLQLVNHDLLEQQN
AALASLPAAKIIELVLQDYPNKLNMIHYLLPKTKAFVKPHLLQRLQFVLT
DSELLELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTLTLGEFEIAQQ
PDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYFPLHPPVPLAQ
LAAKIYEYVSQIVLNEAVNLKDELIKLIVHTLYEQLDRPVGDEN
236 262 0 8 0.6392
262 283 0 8 0.4012
236 283 0 8 0.3859
125 167 0 8 0.34595
217 283 0 8 0.3213
234 283 0 8 0.3162
263 277 0 8 0.3094
217 262 0 8 0.27965
165 227 0 8 0.27965
254 283 0 8 0.2771
112 169 0 8 0.25075
262 277 0 8 0.2448
242 283 0 8 0.23035
268 283 0 8 0.22015
263 283 0 8 0.20485
227 237 0 8 0.1904
213 246 0 8 0.1887
148 162 0 8 0.1853
217 254 0 8 0.1836
119 277 0 8 0.1836
234 262 0 8 0.1819
92 270 0 8 0.1819
END