# This file is the result of combining several RDB files, specifically # T0246.t04.dssp-ebghstl.rdb (weight 1.53986) # T0246.t04.stride-ebghtl.rdb (weight 1.24869) # T0246.t04.str2.rdb (weight 1.54758) # T0246.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0246.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0246 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0246.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 55.4439 # # ============================================ # Comments from T0246.t04.stride-ebghtl.rdb # ============================================ # TARGET T0246 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0246.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 55.4439 # # ============================================ # Comments from T0246.t04.str2.rdb # ============================================ # TARGET T0246 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0246.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 55.4439 # # ============================================ # Comments from T0246.t04.alpha.rdb # ============================================ # TARGET T0246 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0246.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 55.4439 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.2012 0.0075 0.7912 2 K 0.6683 0.0068 0.3249 3 I 0.8845 0.0038 0.1117 4 A 0.9212 0.0035 0.0752 5 V 0.9127 0.0041 0.0832 6 L 0.7329 0.0079 0.2592 7 P 0.2019 0.0418 0.7563 8 G 0.0696 0.0331 0.8973 9 D 0.0680 0.0773 0.8547 10 G 0.0756 0.1476 0.7768 11 I 0.0711 0.2434 0.6855 12 G 0.0338 0.4740 0.4922 13 P 0.0059 0.9132 0.0810 14 E 0.0056 0.9389 0.0555 15 V 0.0050 0.9466 0.0483 16 V 0.0047 0.9568 0.0386 17 R 0.0046 0.9614 0.0340 18 E 0.0047 0.9610 0.0344 19 A 0.0047 0.9598 0.0355 20 L 0.0047 0.9610 0.0343 21 K 0.0046 0.9611 0.0343 22 V 0.0047 0.9593 0.0360 23 L 0.0047 0.9588 0.0366 24 E 0.0047 0.9589 0.0364 25 V 0.0048 0.9575 0.0376 26 V 0.0054 0.9463 0.0483 27 E 0.0073 0.9266 0.0661 28 K 0.0100 0.8756 0.1144 29 K 0.0227 0.7124 0.2649 30 T 0.0506 0.3721 0.5772 31 G 0.0434 0.0815 0.8751 32 K 0.1053 0.0409 0.8538 33 T 0.2130 0.0338 0.7531 34 F 0.4650 0.0801 0.4549 35 E 0.6549 0.0728 0.2723 36 K 0.7793 0.0750 0.1456 37 V 0.7846 0.0750 0.1404 38 F 0.7456 0.0875 0.1669 39 G 0.5659 0.1358 0.2983 40 H 0.3731 0.1991 0.4278 41 I 0.2191 0.2312 0.5498 42 G 0.1377 0.1986 0.6637 43 G 0.0379 0.7155 0.2466 44 D 0.0355 0.8262 0.1383 45 A 0.0322 0.8664 0.1015 46 I 0.0439 0.8542 0.1019 47 D 0.0206 0.8491 0.1303 48 R 0.0221 0.7766 0.2013 49 F 0.0502 0.3656 0.5842 50 G 0.0343 0.0475 0.9183 51 E 0.0697 0.0195 0.9108 52 P 0.1452 0.0203 0.8345 53 L 0.0843 0.0116 0.9041 54 P 0.0569 0.0370 0.9061 55 E 0.0053 0.9263 0.0684 56 E 0.0050 0.9413 0.0537 57 T 0.0051 0.9433 0.0515 58 K 0.0047 0.9559 0.0394 59 K 0.0047 0.9560 0.0393 60 I 0.0048 0.9534 0.0417 61 C 0.0060 0.9442 0.0498 62 L 0.0057 0.9162 0.0781 63 E 0.0083 0.7771 0.2146 64 A 0.0563 0.4047 0.5390 65 D 0.0718 0.1004 0.8278 66 A 0.5400 0.0651 0.3949 67 I 0.8770 0.0214 0.1017 68 F 0.8823 0.0189 0.0987 69 L 0.7257 0.0414 0.2329 70 G 0.3583 0.0412 0.6006 71 S 0.2232 0.0899 0.6869 72 V 0.1973 0.0947 0.7080 73 G 0.1618 0.0603 0.7779 74 G 0.0849 0.0283 0.8868 75 P 0.0864 0.0792 0.8344 76 K 0.1193 0.1616 0.7191 77 W 0.0796 0.3671 0.5533 78 D 0.0625 0.2732 0.6642 79 D 0.0580 0.1608 0.7812 80 L 0.1101 0.0285 0.8614 81 P 0.0837 0.0268 0.8896 82 P 0.0235 0.4586 0.5179 83 E 0.0312 0.4396 0.5292 84 K 0.0659 0.4219 0.5123 85 R 0.0885 0.1315 0.7799 86 P 0.0460 0.3737 0.5803 87 E 0.0534 0.4547 0.4919 88 I 0.0653 0.5584 0.3763 89 G 0.0384 0.5481 0.4135 90 G 0.0339 0.6423 0.3238 91 L 0.0113 0.9052 0.0836 92 L 0.0057 0.9555 0.0388 93 A 0.0062 0.9554 0.0385 94 L 0.0059 0.9543 0.0398 95 R 0.0052 0.9539 0.0409 96 K 0.0058 0.9353 0.0589 97 M 0.0070 0.8861 0.1069 98 L 0.0437 0.7214 0.2350 99 N 0.0455 0.4575 0.4970 100 L 0.1087 0.4973 0.3940 101 Y 0.2892 0.3792 0.3316 102 A 0.4304 0.2528 0.3168 103 N 0.4501 0.1525 0.3974 104 I 0.4370 0.0932 0.4699 105 R 0.3941 0.0894 0.5165 106 P 0.4850 0.1133 0.4017 107 I 0.5109 0.1297 0.3594 108 K 0.6476 0.0913 0.2611 109 V 0.5988 0.1110 0.2902 110 Y 0.3253 0.1305 0.5442 111 R 0.0927 0.2438 0.6635 112 S 0.0752 0.1861 0.7388 113 L 0.1675 0.1380 0.6946 114 V 0.1983 0.1537 0.6480 115 H 0.2249 0.1308 0.6443 116 V 0.1758 0.1520 0.6722 117 S 0.1420 0.1179 0.7401 118 P 0.0724 0.2525 0.6751 119 L 0.0892 0.2618 0.6490 120 K 0.1056 0.3106 0.5837 121 E 0.0965 0.4342 0.4693 122 K 0.1407 0.4424 0.4168 123 V 0.2342 0.4129 0.3529 124 I 0.1722 0.4189 0.4090 125 G 0.0916 0.2772 0.6311 126 S 0.0417 0.1061 0.8522 127 G 0.0669 0.0346 0.8985 128 V 0.2394 0.0106 0.7500 129 D 0.5266 0.0239 0.4495 130 L 0.9222 0.0035 0.0743 131 V 0.9311 0.0034 0.0655 132 T 0.9303 0.0038 0.0658 133 V 0.9118 0.0059 0.0822 134 R 0.8164 0.0231 0.1605 135 E 0.6223 0.0409 0.3367 136 L 0.2671 0.0806 0.6523 137 S 0.1684 0.0771 0.7546 138 Y 0.0903 0.1096 0.8000 139 G 0.1342 0.1209 0.7450 140 V 0.2659 0.1625 0.5716 141 Y 0.3765 0.1356 0.4879 142 Y 0.2665 0.0958 0.6377 143 G 0.1875 0.0550 0.7575 144 Q 0.2773 0.0242 0.6985 145 P 0.3096 0.0460 0.6445 146 R 0.2886 0.0765 0.6349 147 G 0.3032 0.0532 0.6435 148 L 0.2835 0.0393 0.6771 149 D 0.2103 0.0393 0.7503 150 E 0.0986 0.1727 0.7287 151 E 0.1375 0.1772 0.6853 152 K 0.3757 0.1098 0.5146 153 G 0.6389 0.0466 0.3145 154 F 0.7689 0.0322 0.1988 155 D 0.7827 0.0236 0.1937 156 T 0.7723 0.0225 0.2053 157 M 0.8224 0.0159 0.1617 158 I 0.8365 0.0156 0.1479 159 Y 0.6403 0.0284 0.3313 160 D 0.3068 0.0283 0.6649 161 R 0.0172 0.8416 0.1412 162 K 0.0098 0.9174 0.0728 163 T 0.0091 0.9373 0.0535 164 V 0.0057 0.9565 0.0378 165 E 0.0047 0.9605 0.0349 166 R 0.0046 0.9616 0.0337 167 I 0.0047 0.9609 0.0344 168 A 0.0047 0.9613 0.0341 169 R 0.0046 0.9617 0.0337 170 T 0.0047 0.9609 0.0344 171 A 0.0047 0.9598 0.0355 172 F 0.0047 0.9599 0.0354 173 E 0.0047 0.9605 0.0348 174 I 0.0050 0.9540 0.0410 175 A 0.0054 0.9334 0.0612 176 K 0.0060 0.8144 0.1795 177 N 0.0137 0.4986 0.4876 178 R 0.0421 0.1954 0.7625 179 R 0.0502 0.0746 0.8752 180 K 0.1161 0.0276 0.8563 181 K 0.4749 0.0153 0.5098 182 V 0.8206 0.0059 0.1735 183 T 0.8817 0.0129 0.1053 184 S 0.8872 0.0090 0.1038 185 V 0.7533 0.0193 0.2274 186 D 0.4667 0.0226 0.5107 187 K 0.1834 0.2410 0.5756 188 A 0.0918 0.3759 0.5323 189 N 0.0824 0.4402 0.4774 190 V 0.1541 0.4565 0.3893 191 L 0.1862 0.4493 0.3645 192 Y 0.1259 0.4424 0.4317 193 S 0.0776 0.3843 0.5381 194 S 0.0394 0.5699 0.3906 195 M 0.0096 0.8836 0.1068 196 L 0.0078 0.9281 0.0641 197 W 0.0050 0.9511 0.0439 198 R 0.0047 0.9594 0.0359 199 K 0.0047 0.9601 0.0351 200 V 0.0047 0.9604 0.0349 201 V 0.0047 0.9599 0.0354 202 N 0.0047 0.9602 0.0351 203 E 0.0048 0.9583 0.0370 204 V 0.0049 0.9485 0.0466 205 A 0.0055 0.9199 0.0745 206 R 0.0061 0.8415 0.1525 207 E 0.0134 0.6210 0.3656 208 Y 0.0794 0.0436 0.8770 209 P 0.0143 0.1225 0.8632 210 D 0.0360 0.0615 0.9025 211 V 0.3457 0.0234 0.6309 212 E 0.6523 0.0184 0.3293 213 L 0.6951 0.0603 0.2447 214 T 0.4030 0.1352 0.4619 215 H 0.3310 0.2116 0.4573 216 I 0.3144 0.3969 0.2888 217 Y 0.1806 0.6805 0.1389 218 V 0.0777 0.8088 0.1134 219 D 0.0233 0.8919 0.0848 220 N 0.0080 0.9457 0.0463 221 A 0.0066 0.9516 0.0418 222 A 0.0053 0.9556 0.0390 223 M 0.0053 0.9562 0.0385 224 Q 0.0058 0.9473 0.0470 225 L 0.0071 0.9198 0.0731 226 I 0.0162 0.8368 0.1469 227 L 0.0442 0.6128 0.3431 228 K 0.0912 0.0347 0.8741 229 P 0.0143 0.3435 0.6423 230 S 0.0174 0.3282 0.6543 231 Q 0.1517 0.3146 0.5337 232 F 0.4237 0.0222 0.5541 233 D 0.4927 0.0388 0.4686 234 V 0.8969 0.0066 0.0964 235 I 0.9212 0.0049 0.0739 236 L 0.8946 0.0055 0.0998 237 T 0.6664 0.0191 0.3145 238 T 0.2214 0.0944 0.6842 239 N 0.0851 0.1406 0.7743 240 M 0.0786 0.2052 0.7162 241 F 0.0852 0.2406 0.6742 242 G 0.0569 0.3755 0.5676 243 D 0.0607 0.4890 0.4503 244 I 0.0862 0.6834 0.2304 245 L 0.0948 0.6925 0.2127 246 S 0.0876 0.6244 0.2880 247 D 0.0495 0.7075 0.2431 248 E 0.0355 0.7798 0.1847 249 S 0.0428 0.7513 0.2059 250 A 0.0680 0.6308 0.3012 251 A 0.0979 0.4876 0.4145 252 L 0.1427 0.1938 0.6635 253 P 0.0872 0.1936 0.7192 254 G 0.0796 0.1621 0.7583 255 S 0.1251 0.2063 0.6685 256 L 0.1037 0.2330 0.6633 257 G 0.1534 0.1505 0.6961 258 L 0.2591 0.1043 0.6366 259 L 0.1963 0.0483 0.7554 260 P 0.1775 0.0724 0.7501 261 S 0.2154 0.0934 0.6912 262 A 0.2639 0.1248 0.6113 263 S 0.3138 0.0860 0.6002 264 F 0.2830 0.1088 0.6082 265 G 0.1204 0.0555 0.8241 266 D 0.0551 0.1252 0.8198 267 K 0.0615 0.1197 0.8188 268 N 0.1257 0.1132 0.7611 269 L 0.3156 0.0802 0.6041 270 Y 0.5339 0.0488 0.4173 271 E 0.4117 0.0594 0.5289 272 P 0.2641 0.0760 0.6599 273 A 0.1786 0.0912 0.7302 274 G 0.1273 0.0867 0.7861 275 G 0.0864 0.0930 0.8206 276 S 0.1409 0.1058 0.7534 277 A 0.1107 0.2129 0.6764 278 P 0.0889 0.3718 0.5393 279 D 0.0474 0.5142 0.4384 280 I 0.0627 0.5115 0.4257 281 A 0.0567 0.2982 0.6452 282 G 0.0443 0.1149 0.8408 283 K 0.0871 0.1265 0.7864 284 N 0.1356 0.1819 0.6825 285 I 0.1519 0.2955 0.5527 286 A 0.1412 0.2785 0.5803 287 N 0.0602 0.3859 0.5539 288 P 0.0058 0.9181 0.0761 289 I 0.0047 0.9594 0.0359 290 A 0.0047 0.9603 0.0351 291 Q 0.0046 0.9614 0.0340 292 I 0.0046 0.9616 0.0338 293 L 0.0046 0.9612 0.0342 294 S 0.0046 0.9611 0.0343 295 L 0.0046 0.9609 0.0345 296 A 0.0047 0.9608 0.0346 297 M 0.0047 0.9563 0.0390 298 M 0.0048 0.9383 0.0568 299 L 0.0051 0.8929 0.1020 300 E 0.0064 0.8109 0.1826 301 H 0.0141 0.6671 0.3188 302 S 0.0159 0.5299 0.4542 303 F 0.0506 0.3093 0.6402 304 G 0.0327 0.1547 0.8126 305 M 0.0279 0.5864 0.3856 306 V 0.0118 0.8826 0.1056 307 E 0.0054 0.9334 0.0612 308 E 0.0056 0.9352 0.0592 309 A 0.0048 0.9516 0.0436 310 R 0.0047 0.9572 0.0381 311 K 0.0047 0.9552 0.0400 312 I 0.0047 0.9593 0.0360 313 E 0.0047 0.9605 0.0349 314 R 0.0047 0.9610 0.0343 315 A 0.0047 0.9611 0.0342 316 V 0.0047 0.9611 0.0343 317 E 0.0046 0.9615 0.0339 318 L 0.0046 0.9611 0.0342 319 V 0.0047 0.9600 0.0354 320 I 0.0048 0.9504 0.0447 321 E 0.0057 0.9121 0.0822 322 E 0.0393 0.4589 0.5018 323 G 0.0320 0.0797 0.8883 324 Y 0.1030 0.0321 0.8650 325 R 0.2916 0.0364 0.6720 326 T 0.2152 0.0717 0.7131 327 R 0.1243 0.2974 0.5782 328 D 0.1233 0.3860 0.4907 329 I 0.0970 0.4179 0.4852 330 A 0.1135 0.2510 0.6355 331 E 0.1007 0.1244 0.7750 332 D 0.0893 0.0298 0.8809 333 P 0.0267 0.2400 0.7333 334 E 0.0312 0.3046 0.6642 335 K 0.0792 0.3262 0.5946 336 A 0.2474 0.2023 0.5502 337 V 0.3212 0.1360 0.5428 338 S 0.2035 0.1294 0.6671 339 T 0.0355 0.6776 0.2869 340 S 0.0070 0.9153 0.0777 341 Q 0.0065 0.9402 0.0533 342 M 0.0047 0.9579 0.0374 343 G 0.0047 0.9612 0.0342 344 D 0.0046 0.9614 0.0339 345 L 0.0046 0.9614 0.0340 346 I 0.0047 0.9601 0.0353 347 C 0.0047 0.9599 0.0355 348 K 0.0047 0.9586 0.0367 349 K 0.0048 0.9515 0.0436 350 L 0.0050 0.9402 0.0549 351 E 0.0052 0.9130 0.0818 352 E 0.0062 0.8516 0.1422 353 I 0.0114 0.7362 0.2524 354 W 0.0300 0.2446 0.7253