# List of top-scoring protein chains for T0246.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cm7A 363 2.48e-58 1cnzA c.77.1.1 35063 1cnzA 363 2.91e-58 1cnzA c.77.1.1 35061 2ayqA 366 5.07e-58 1cnzA c.77.1.1 35057 1a05A 358 1.94e-57 1cnzA c.77.1.1 35059 1xad 345 3.08e-56 1cnzA c.77.1.1 35055 1osjA 345 8.82e-56 1cnzA c.77.1.1 35039 1gc8A 345 1.04e-55 1cnzA c.77.1.1 35042 1g2uA 345 1.17e-55 1cnzA c.77.1.1 35036 1xaa 345 1.39e-55 1cnzA c.77.1.1 35033 1dr0A 346 1.58e-55 1cnzA c.77.1.1 35045 1dpzA 349 1.81e-55 1cnzA c.77.1.1 35053 1gc9A 345 1.97e-55 1cnzA c.77.1.1 35037 1dr8A 344 2.20e-55 1cnzA c.77.1.1 35051 1ipd 345 2.27e-55 1cnzA c.77.1.1 35038 1walA 345 3.39e-55 1cnzA c.77.1.1 35041 1idm 343 1.01e-54 1cnzA c.77.1.1 35035 1iso 416 4.66e-52 1iso c.77.1.1 35065 1bl5 414 2.97e-51 1iso c.77.1.1 35083 1pb1A 416 3.03e-51 c.77.1.1 88014 1grp 416 3.23e-51 1iso c.77.1.1 35077 1cw7A 416 4.68e-51 1iso c.77.1.1 35087 6icd 416 5.10e-51 1iso c.77.1.1 35081 1hj6A 416 5.17e-51 1iso c.77.1.1 35070 1gro 416 5.22e-51 1iso c.77.1.1 35079 1ide 416 5.80e-51 1iso c.77.1.1 35082 1cw4A 416 1.00e-50 1iso c.77.1.1 35068 1hqsA 423 2.08e-50 1iso c.77.1.1 61154 1lwdA 413 9.48e-45 c.77.1.1 78265 1t0lA 414 9.64e-44 1itwA 741 2.63e-02 c.77.1.2 76793 1ptmA 329 2.68e-02 unknown_sccs -8456 1ps6A 328 2.68e-02 unknown_sccs -8458 1r8kA 329 3.02e-01 unknown_sccs -8461 1lf1A 308 1.28e+00 c.1.8.3 73877 1dxy 333 1.59e+00 1dxy c.2.1.4 30094 c.23.12.1 31354 1h5vA 304 1.75e+00 c.1.8.3 70898 7a3hA 303 1.76e+00 7a3hA c.1.8.3 28817 1qi2A 305 1.76e+00 7a3hA c.1.8.3 28824 1a3h 300 1.80e+00 7a3hA c.1.8.3 28819 1qdlA 422 2.62e+00 1qdlA d.161.1.1 42088 1ljuA 130 4.28e+00 c.44.1.1 73944 1kb9E 185 4.82e+00 b.33.1.1 77319 f.23.12.1 77320 1ljlA 131 5.08e+00 c.44.1.1 73939 1jf8A 131 5.26e+00 c.44.1.1 66621 8dfr 189 5.28e+00 1aoeA c.71.1.1 34895 1lk0A 131 5.34e+00 c.44.1.1 73948 1rie 129 5.57e+00 1rie b.33.1.1 24427 1rhs 296 5.63e+00 1rhs c.46.1.2 32703 c.46.1.2 32704 1dp2A 293 5.72e+00 1rhs c.46.1.2 32705 c.46.1.2 32706 1t5jA 313 5.83e+00 unknown_sccs -1951 1bccE 196 6.28e+00 1rie b.33.1.1 24431 f.23.12.1 43699 1np7A 489 6.35e+00 a.99.1.1 80677 c.28.1.1 80678 1rerA 391 6.37e+00 b.1.18.4 -2740 f.10.1.1 -12385 1i9wA 390 6.37e+00 b.1.18.4 71163 f.10.1.1 71164 1l0lE 196 6.43e+00 b.33.1.1 84490 f.23.12.1 84491 1h7nA 340 6.95e+00 1b4kA c.1.10.3 60726 1h7oA 341 6.99e+00 c.1.10.3 60727 1ohlA 342 7.01e+00 c.1.10.3 87035 1jykA 254 8.15e+00 c.68.1.13 67458 1ylvA 342 8.47e+00 1b4kA c.1.10.3 29180 1rxiA 131 9.03e+00 1qmgA 524 9.09e+00 1qmgA a.100.1.2 18785 c.2.1.6 30182 1jud 232 9.87e+00 1qq5A c.108.1.1 43325 1n8yC 608 1.02e+01 c.10.2.5 80314 c.10.2.5 80315 g.3.9.1 80316 g.3.9.1 80317 1zrn 232 1.10e+01 1qq5A c.108.1.1 43323 1uufA 369 1.14e+01 b.35.1.2 -3706 c.2.1.1 -5730 1i4gA 233 1.21e+01 3seb b.40.2.2 25148 d.15.6.1 37737 1ojt 482 1.28e+01 1lvl c.3.1.5 30581 c.3.1.5 30582 d.87.1.1 40212 1aw5 340 1.28e+01 1b4kA c.1.10.3 29181 1bhy 482 1.30e+01 1lvl c.3.1.5 30583 c.3.1.5 30584 d.87.1.1 40213 1vhwA 253 1.37e+01 c.56.2.1 -7765 1aorA 605 1.40e+01 1b25A a.110.1.1 19042 d.152.1.1 41794 1v7mV 163 1.42e+01 a.26.1.2 -713 1v7nV 163 1.42e+01 a.26.1.2 -715 1nnhA 294 1.50e+01 d.104.1.1 -10772 1ybvA 283 1.55e+01 1ybvA c.2.1.2 29948 1g0oA 283 1.55e+01 1ybvA c.2.1.2 60181 1esfA 233 1.57e+01 3seb b.40.2.2 25146 d.15.6.1 37735 1j3gA 187 1.73e+01 d.118.1.1 77075 1uu1A 335 1.85e+01 c.67.1.1 -8146 1dyqA 234 2.01e+01 3seb b.40.2.2 59140 d.15.6.1 59141 1i0eA 381 2.03e+01 a.83.1.1 83655 d.128.1.2 83656 1k4wA 252 2.06e+01 a.123.1.1 72068 1nq7A 244 2.09e+01 a.123.1.1 -1682 1n4hA 259 2.11e+01 a.123.1.1 -1681 1dar 691 2.11e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1hskA 326 2.12e+01 2mbr d.145.1.2 61241 d.146.1.1 61242 2efgA 691 2.20e+01 1dar b.43.3.1 25708 c.37.1.8 32143 d.14.1.1 37548 d.58.11.1 39301 1l9vA 317 2.30e+01 d.13.2.1 73760 d.216.1.1 73761 1rhd 293 2.34e+01 1rhs c.46.1.2 32715 c.46.1.2 32716 1rylA 167 2.44e+01 1hxjA 507 2.57e+01 c.1.8.4 76729 1e1eA 512 2.58e+01 1e70M c.1.8.4 28944 1m6uA 272 2.61e+01 b.2.5.7 78706 1m54A 363 2.64e+01 c.79.1.1 74463 1fnmA 691 2.67e+01 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1jbqA 435 2.82e+01 1oasA c.79.1.1 62850 1vf5D 179 2.90e+01 b.33.1.1 -3541 f.23.12.1 -12138 1earA 147 2.91e+01 b.107.1.1 64875 d.58.38.1 64876 1a8y 367 2.94e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1v08A 512 2.95e+01 1k20A 310 3.00e+01 c.107.1.1 68027 2amg 418 3.08e+01 1jdc b.71.1.1 27796 c.1.8.1 28783 1gcyA 527 3.10e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1qapA 296 3.11e+01 1qpoA c.1.17.1 29559 d.41.2.1 38595 1zpdA 568 3.18e+01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1vzv 221 3.22e+01 1at3A b.57.1.1 27025 1mn4A 282 3.28e+01 b.2.5.7 79313 1on2A 142 3.37e+01 a.4.5.24 87103 a.76.1.1 87104 1qi5A 429 3.42e+01 1jdc b.71.1.1 27792 c.1.8.1 28779 1do0A 442 3.43e+01 1do0A c.37.1.20 32432 1g4aE 443 3.47e+01 1do0A c.37.1.20 32444 1qi4A 429 3.52e+01 1jdc b.71.1.1 27791 c.1.8.1 28778 1efm 379 3.61e+01 1efcA c.37.1.8 64732 1b3qA 379 3.65e+01 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 1qi3A 429 3.66e+01 1jdc b.71.1.1 27794 c.1.8.1 28781 1e94E 449 3.67e+01 1do0A c.37.1.20 32442 1hyp 80 3.71e+01 1hyp a.52.1.1 17806 1on1A 142 3.73e+01 a.4.5.24 87099 a.76.1.1 87100 1ig0A 319 3.75e+01 1ig0A b.82.6.1 62354 c.100.1.1 62355 1etu 379 3.77e+01 1efcA c.37.1.8 64737 1l0lD 241 3.77e+01 a.3.1.3 84488 f.23.11.1 84489 1h49A 512 3.80e+01 c.1.8.4 83477 1jdc 429 3.84e+01 1jdc b.71.1.1 27789 c.1.8.1 28776 1q5nA 454 3.89e+01 a.127.1.1 -1756 1vj7A 393 3.94e+01 unknown_sccs -1265 unknown_sccs -9814