# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cnzA 363 5.44e-51 1cnzA c.77.1.1 35061 1a05A 358 1.98e-50 1cnzA c.77.1.1 35059 1iso 416 1.37e-45 1iso c.77.1.1 35065 1pb1A 416 5.22e-45 c.77.1.1 88014 1hqsA 423 1.08e-44 1iso c.77.1.1 61154 1lwdA 413 1.51e-40 c.77.1.1 78265 1itwA 741 1.44e-06 c.77.1.2 76793 1ptmA 329 9.85e-05 unknown_sccs -8456 1h7nA 342 3.46e-01 1b4kA c.1.10.3 60726 1kyqA 274 3.50e-01 c.2.1.11 73281 e.37.1.1 73282 1lc5A 364 3.81e-01 c.67.1.1 73827 1ohlA 342 4.40e-01 c.1.10.3 87035 1t0hB 224 5.15e-01 1obbA 480 7.46e-01 c.2.1.5 86760 d.162.1.2 86761 1fxjA 331 8.67e-01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1np7A 489 1.18e+00 a.99.1.1 80677 c.28.1.1 80678 1alo 907 1.32e+00 1alo 1hlrA 907 1.43e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1dar 691 1.54e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1vjoA 393 1.64e+00 c.67.1.3 -8173 1kl7A 514 1.67e+00 c.79.1.1 72678 1t3lA 337 1.88e+00 1p3wA 404 2.01e+00 c.67.1.3 87752 1rthA 560 2.47e+00 1rthA c.55.3.1 33576 e.8.1.2 43028 7a3hA 303 2.51e+00 7a3hA c.1.8.3 28817 1hv9A 456 2.54e+00 1fwyA b.81.1.4 28060 c.68.1.5 34518 1vrtA 560 2.55e+00 1rthA c.55.3.1 33574 e.8.1.2 43023 1j2rA 199 2.81e+00 unknown_sccs -6799 1earA 147 2.86e+00 b.107.1.1 64875 d.58.38.1 64876 1kwgA 645 2.88e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1wdnA 226 4.04e+00 1lst c.94.1.1 35816 1qxyA 252 4.13e+00 d.127.1.1 -10993 1cg2A 393 4.26e+00 1cg2A c.56.5.4 33844 d.58.19.1 39360 1s7hA 200 4.29e+00 1qmgA 524 4.76e+00 1qmgA a.100.1.2 18785 c.2.1.6 30182 1qv9A 283 5.21e+00 unknown_sccs -6888 1r5jA 337 5.81e+00 unknown_sccs -8471 1jykA 254 6.11e+00 c.68.1.13 67458 3mag 307 6.46e+00 3mag c.66.1.25 34205 12asA 330 6.56e+00 12asA d.104.1.1 40783 1evyA 366 6.85e+00 1evyA a.100.1.6 18811 c.2.1.6 30215 1nal1 297 7.03e+00 1nal3 2plc 274 7.29e+00 2plc c.1.18.2 29614 1qsgA 265 7.53e+00 1eny c.2.1.2 29935 1ftkA 279 7.58e+00 1gr2A c.94.1.1 35819 1gggA 226 7.90e+00 1lst c.94.1.1 35817 1n2sA 299 8.12e+00 c.2.1.2 79857 1odzA 386 8.29e+00 c.1.8.3 86889 1i9sA 210 8.31e+00 1i9sA c.45.1.1 62099 1eyeA 280 8.35e+00 1aj2 c.1.21.1 29672 1b66A 140 8.64e+00 1b66A d.96.1.2 40657 1oxkB 134 8.68e+00 c.23.1.1 -6411 1rm8A 169 8.85e+00 d.92.1.11 -10584 1ky3A 182 8.94e+00 c.37.1.8 73193 1q5nA 454 9.08e+00 a.127.1.1 -1756 1eg5A 384 9.14e+00 1ecxA c.67.1.3 34429 1nktA 922 9.16e+00 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 2shpA 525 9.49e+00 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 2fcr 173 9.81e+00 1rcf c.23.5.1 31151 1f6dA 376 9.83e+00 1f6dA c.87.1.3 35467 1ml9A 302 1.03e+01 b.85.7.1 79282 1g0oA 283 1.06e+01 1ybvA c.2.1.2 60181 1chmA 401 1.09e+01 1chmA c.55.2.1 33545 d.127.1.1 41142 1t0iA 191 1.09e+01 1e1oA 504 1.12e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1k6xA 352 1.13e+01 c.2.1.2 68238 1j0aA 325 1.13e+01 c.79.1.1 83871 1rhs 296 1.14e+01 1rhs c.46.1.2 32703 c.46.1.2 32704 1yrgA 385 1.15e+01 1yrgA c.10.1.2 30854 1sb8A 352 1.18e+01 1j9yA 385 1.20e+01 1j9yA c.1.8.3 62791 1fehA 574 1.24e+01 1fehA c.96.1.1 36015 d.15.4.2 37690 d.58.1.5 38998 1ursA 402 1.27e+01 c.94.1.1 -8651 1rie 129 1.29e+01 1rie b.33.1.1 24427 1po5A 476 1.37e+01 a.104.1.1 -1467 1hl2A 297 1.38e+01 c.1.10.1 83581 1rpxA 230 1.43e+01 1rpxA c.1.2.2 28536 1ass 159 1.44e+01 1a6dA c.8.5.2 30818 1us5A 314 1.45e+01 c.94.1.1 -8686 1rypA 243 1.46e+01 1pmaA d.153.1.4 41932 1qydA 313 1.48e+01 c.2.1.2 -5786 1m6eX 359 1.49e+01 unknown_sccs -8071 1cozA 129 1.55e+01 1cozA c.26.1.2 31598 1ojqA 212 1.58e+01 d.166.1.1 -11568 1nhs 447 1.65e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1r9cA 139 1.65e+01 d.32.1.2 -9557 1qo2A 241 1.65e+01 1qo2A c.1.2.1 28533 1vizA 240 1.68e+01 c.1.4.1 -5212 1nmoA 247 1.71e+01 unknown_sccs -8746 1l2lA 457 1.76e+01 c.72.1.3 77656 1e5eA 404 1.78e+01 1ibjA c.67.1.3 59265 1nhp 447 1.90e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1ufkA 254 1.91e+01 unknown_sccs -8103 1clxA 347 1.92e+01 1taxA c.1.8.3 28899 1id1A 153 1.92e+01 1id1A c.2.1.9 62286 1l8nA 679 1.92e+01 c.1.8.10 84564 d.92.2.2 84565 1rkd 309 1.93e+01 1rkd c.72.1.1 34928 1onwA 390 1.93e+01 b.92.1.7 87172 c.1.9.13 87173 1p5sA 203 1.95e+01 a.40.1.1 -900 2gsaA 432 1.96e+01 2gsaA c.67.1.4 34446 1a4yA 460 1.98e+01 1a4yA c.10.1.1 30852 1g291 372 2.06e+01 1g291 1htyA 1015 2.07e+01 a.8.3.1 83064 b.30.5.6 83065 c.6.2.1 83066 1jk3A 158 2.09e+01 d.92.1.11 66790 1pvyA 227 2.12e+01 d.115.1.2 -10937 1v1aA 309 2.14e+01 c.72.1.1 -8400 1nbwA 607 2.18e+01 c.8.6.1 80393 c.55.1.6 80394 c.55.1.6 80395 1k77A 260 2.22e+01 c.1.15.5 72096 1dhpA 292 2.26e+01 1dhpA c.1.10.1 29097 1e55A 512 2.32e+01 1e70M c.1.8.4 28934 1vc4A 254 2.35e+01 c.1.2.4 -5172 1alvA 173 2.35e+01 1alvA a.39.1.8 17370 1ekeA 230 2.35e+01 1ekeA c.55.3.1 33572 1hp1A 516 2.36e+01 d.114.1.1 70976 d.159.1.2 70977 1mjfA 281 2.42e+01 c.66.1.17 79198 1k4mA 213 2.45e+01 c.26.1.3 77258 1di0A 158 2.49e+01 1di0A c.16.1.1 30957 1ex1A 605 2.50e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1vsd 152 2.51e+01 1cxqA c.55.3.2 33625 1umdB 324 2.55e+01 c.36.1.7 -6929 c.48.1.2 -7539 1j0hA 588 2.56e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1a53 247 2.59e+01 1a53 c.1.2.4 28564 1vpt 348 2.62e+01 3mag c.66.1.25 34207 1h49A 512 2.70e+01 c.1.8.4 83477 1s8fA 177 2.72e+01 1f9aA 168 2.72e+01 1f9aA c.26.1.3 31602 1brwA 433 2.74e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1lam 484 2.76e+01 1lam c.56.5.3 33829 c.50.1.1 33166 1hrhA 136 2.79e+01 1rthA c.55.3.1 33577 1augA 215 2.82e+01 1a2zA c.56.4.1 33798 1djxB 624 2.85e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1mumA 295 2.86e+01 c.1.12.7 85108 1qgvA 142 2.87e+01 1qgvA c.47.1.8 33056 1gadO 330 2.89e+01 1dssG c.2.1.3 29950 d.81.1.1 39865 1qopA 268 2.90e+01 2tysA c.1.2.4 28570 1mlwA 301 2.91e+01 d.178.1.1 79289 1ka2A 499 2.97e+01 d.92.1.5 77305 1p2xA 159 3.01e+01 1mml 265 3.04e+01 1mml e.8.1.2 43015 1igs 248 3.06e+01 1a53 c.1.2.4 28565 1jx6A 342 3.09e+01 c.93.1.1 67406 1gg1A 350 3.10e+01 1qr7A c.1.10.4 29187 1lylA 504 3.15e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1o86A 589 3.16e+01 d.92.1.5 81177 1l8bA 190 3.23e+01 d.86.1.1 73683 1j3gA 187 3.34e+01 d.118.1.1 77075 1ccwB 483 3.35e+01 1cb7B c.1.19.2 29646 1vk9A 151 3.36e+01 1v39 322 3.39e+01 3mag c.66.1.25 34206 1vp9 322 3.39e+01 3mag c.66.1.25 34210 1n0uA 842 3.45e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1j8yF 297 3.53e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1v1rA 400 3.53e+01 1rf6A 427 3.55e+01 d.68.2.2 -10314 1ualA 274 3.58e+01 c.116.1.4 88383 1jb9A 316 3.61e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1l0lB 439 3.64e+01 d.185.1.1 84484 d.185.1.1 84485 1dqwA 267 3.65e+01 1dqwA c.1.2.3 28551 1mkmA 249 3.65e+01 a.4.5.33 79242 d.110.2.2 79243 1qwnA 1045 3.66e+01 a.8.3.1 -414 b.30.5.6 -3517 c.6.2.1 -6058 1qnf 484 3.68e+01 1qnf a.99.1.1 18777 c.28.1.1 31632 1ek0A 170 3.69e+01 1ctqA c.37.1.8 32076 1ojxA 263 3.70e+01 c.1.10.1 -5445 1pii 452 3.71e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1cb0A 283 3.71e+01 1cb0A c.56.2.1 33790 1i27A 73 3.77e+01 1i27A a.4.5.30 61555 1g63A 181 3.79e+01 1g5qA c.34.1.1 60299 1nxqA 251 3.80e+01 c.2.1.2 86388 1e3oC 160 3.81e+01 1au7A a.4.1.1 59197 a.35.1.1 59198 1ex0A 731 3.82e+01 b.1.18.9 -2754 b.1.5.1 -2778 b.1.5.1 -2779 d.3.1.4 -8889 1mg7A 417 3.83e+01 d.14.1.6 84954 d.58.26.6 84955 1b77A 228 3.84e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1ct9A 553 3.87e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1auvA 311 3.94e+01 1auvA c.30.1.5 31723 d.142.1.3 41558