# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cnzA 363 4.68e-37 1cnzA c.77.1.1 35061 1a05A 358 2.07e-36 1cnzA c.77.1.1 35059 1iso 416 2.16e-33 1iso c.77.1.1 35065 1pb1A 416 5.63e-33 c.77.1.1 88014 1hqsA 423 2.13e-32 1iso c.77.1.1 61154 1lwdA 413 3.46e-30 c.77.1.1 78265 1itwA 741 4.17e-05 c.77.1.2 76793 1ptmA 329 4.06e-02 unknown_sccs -8456 1t0iA 191 1.87e-01 7a3hA 303 2.13e-01 7a3hA c.1.8.3 28817 1fts 295 3.22e-01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1ceo 343 3.94e-01 1ceo c.1.8.3 28808 1tikA 213 4.45e-01 1cb0A 283 4.68e-01 1cb0A c.56.2.1 33790 1kmqA 184 7.04e-01 c.37.1.8 84412 1lc5A 364 8.80e-01 c.67.1.1 73827 1hskA 326 1.09e+00 2mbr d.145.1.2 61241 d.146.1.1 61242 1vknA 351 1.45e+00 1umdB 324 1.53e+00 c.36.1.7 -6929 c.48.1.2 -7539 1n2sA 299 1.94e+00 c.2.1.2 79857 1qcwA 410 1.98e+00 1gox c.1.4.1 28622 1q7zA 566 2.17e+00 c.1.21.2 -5638 c.1.26.1 -5666 1dxy 333 2.18e+00 1dxy c.2.1.4 30094 c.23.12.1 31354 1tx4B 178 2.35e+00 1ctqA c.37.1.8 32045 1f6dA 376 2.39e+00 1f6dA c.87.1.3 35467 1lfwA 470 2.72e+00 c.56.5.4 77942 d.58.19.1 77943 1b66A 140 3.00e+00 1b66A d.96.1.2 40657 1qydA 313 3.27e+00 c.2.1.2 -5786 1fjhA 257 3.43e+00 1fjhB c.2.1.2 29870 1e0wA 313 4.40e+00 1taxA c.1.8.3 59150 1alo 907 4.66e+00 1alo 1nq6A 302 4.78e+00 c.1.8.3 -5332 1hlrA 907 4.89e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1zrn 232 5.00e+00 1qq5A c.108.1.1 43323 1xyzA 347 5.70e+00 1taxA c.1.8.3 28804 1geeA 261 5.81e+00 c.2.1.2 -5814 1gcoA 261 6.01e+00 1ybvA c.2.1.2 29884 2fcr 173 6.45e+00 1rcf c.23.5.1 31151 1odzA 386 6.60e+00 c.1.8.3 86889 1nxqA 251 6.83e+00 c.2.1.2 86388 1p8kZ 254 6.86e+00 d.95.2.1 -10648 d.95.2.1 -10649 1g0oA 283 7.06e+00 1ybvA c.2.1.2 60181 1pwxA 254 7.47e+00 c.2.1.2 -5858 1dkuA 317 7.75e+00 1dkuA c.61.1.2 34118 c.61.1.2 34119 1c7qA 445 7.90e+00 2pgi c.80.1.2 35307 1h7nA 342 8.53e+00 1b4kA c.1.10.3 60726 1qgdA 662 8.81e+00 c.36.1.6 88367 c.36.1.10 88368 c.48.1.1 88369 1xvaA 292 8.90e+00 1xvaA c.66.1.5 34183 1o4vA 183 8.94e+00 c.23.8.1 86628 1cydA 244 9.08e+00 1cydA c.2.1.2 29825 1l5xA 280 9.19e+00 c.106.1.1 77718 1j9yA 385 9.29e+00 1j9yA c.1.8.3 62791 1jykA 254 9.68e+00 c.68.1.13 67458 1thg 544 9.75e+00 1thg c.69.1.17 34763 1kid 203 9.81e+00 1derA c.8.5.1 30771 1j8yF 297 9.95e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1od8A 313 1.05e+01 c.1.8.3 86838 1gr0A 367 1.07e+01 c.2.1.3 70379 d.81.1.3 70380 1mg2D 155 1.08e+01 a.3.1.1 79062 1bg4 302 1.10e+01 1taxA c.1.8.3 28806 1ohlA 342 1.16e+01 c.1.10.3 87035 1o5iA 249 1.16e+01 c.2.1.2 -5833 1ou0A 207 1.18e+01 c.23.17.1 -6498 1jqeA 292 1.19e+01 c.66.1.19 71789 1ur3M 319 1.25e+01 c.1.7.1 -5248 1hxhA 253 1.26e+01 c.2.1.2 76725 1e3dA 266 1.29e+01 2frvA e.19.1.1 59188 1ojxA 263 1.34e+01 c.1.10.1 -5445 1fc3A 120 1.35e+01 1fc3A a.4.6.3 16237 1lst 239 1.39e+01 1lst c.94.1.1 35755 1hu4A 288 1.39e+01 1hu4A 1n5dA 288 1.40e+01 c.2.1.2 80030 1rreA 200 1.40e+01 unknown_sccs -9106 1c3cA 429 1.41e+01 1c3cA a.127.1.1 19425 1km4A 247 1.45e+01 c.1.2.3 72740 1fmcA 255 1.48e+01 1cydA c.2.1.2 29856 1om1A 332 1.50e+01 d.144.1.7 -11318 1nf2A 268 1.51e+01 c.108.1.10 -6842 1m22A 503 1.59e+01 c.117.1.1 78464 2mtaC 147 1.59e+01 2mtaC a.3.1.1 15908 1h49A 512 1.68e+01 c.1.8.4 83477 1srvA 145 1.73e+01 1derA c.8.5.1 30817 1nhp 447 1.74e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1ic6A 279 1.75e+01 1gci c.41.1.1 62257 1fjgB 256 1.78e+01 1fjfB c.23.15.1 31400 1kbjA 412 1.84e+01 c.1.4.1 72280 1rypA 243 1.87e+01 1pmaA d.153.1.4 41932 1eqjA 511 1.90e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1pt6A 213 1.92e+01 c.62.1.1 -7975 1wdnA 226 1.93e+01 1lst c.94.1.1 35816 1m2rA 327 1.94e+01 d.144.1.7 84760 1di0A 158 2.00e+01 1di0A c.16.1.1 30957 1vicA 262 2.01e+01 c.68.1.13 -8252 1pvvA 315 2.02e+01 c.78.1.1 -8495 c.78.1.1 -8496 1l8aA 886 2.10e+01 c.36.1.6 73678 c.36.1.10 73677 c.48.1.1 73679 2sqcA 631 2.11e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1ash 150 2.12e+01 1ash a.1.1.2 15622 1clxA 347 2.15e+01 1taxA c.1.8.3 28899 1mo9A 523 2.16e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1b74A 254 2.21e+01 1b74A c.78.2.1 35264 c.78.2.1 35265 1e55A 512 2.22e+01 1e70M c.1.8.4 28934 1mvlA 209 2.24e+01 c.34.1.1 85146 1nuyA 337 2.26e+01 e.7.1.1 86213 1n82A 331 2.31e+01 c.1.8.3 -5306 1gz6A 319 2.35e+01 c.2.1.2 76410 1qgvA 142 2.36e+01 1qgvA c.47.1.8 33056 1qc5A 192 2.37e+01 1aoxA c.62.1.1 34147 1qo2A 241 2.37e+01 1qo2A c.1.2.1 28533 1p9aG 290 2.44e+01 c.10.2.7 87990 1fp2A 352 2.45e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1icpA 376 2.54e+01 1oyc c.1.4.1 62270 1jy1A 464 2.65e+01 d.136.1.3 67438 d.136.1.3 67439 1el5A 389 2.67e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1a6o 332 2.70e+01 1a6o 1o98A 511 2.70e+01 c.105.1.1 86684 c.76.1.3 86685 1kl7A 514 2.74e+01 c.79.1.1 72678 1h4pA 408 2.78e+01 c.1.8.3 -5314 1dosA 358 2.78e+01 1dosA c.1.10.2 29175 1ut8A 291 2.79e+01 a.60.7.1 -1036 c.120.1.2 -6675 1oatA 439 2.82e+01 2dkb c.67.1.4 34461 1dvjA 246 2.87e+01 1dvjA c.1.2.3 28546 1nvmB 312 2.87e+01 c.2.1.3 86251 d.81.1.1 86252 1lk5A 229 2.93e+01 unknown_sccs 73960 d.58.40.1 73961 1j8mF 297 2.93e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1d8wA 426 2.95e+01 1de5A c.1.15.2 29394 1burA 475 2.97e+01 1burA 1frpA 335 3.00e+01 1frpA e.7.1.1 42875 1bmtA 246 3.02e+01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1g0cA 364 3.03e+01 7a3hA c.1.8.3 60165 1ualA 274 3.11e+01 c.116.1.4 88383 1nhs 447 3.14e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 8dfr 189 3.15e+01 1aoeA c.71.1.1 34895 1o5kA 306 3.16e+01 c.1.10.1 -5482 3thiA 371 3.18e+01 2thiA c.94.1.1 35792 1m7gA 211 3.18e+01 c.37.1.4 78724 1lbvA 252 3.25e+01 e.7.1.1 73813 1pjcA 361 3.27e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 1i19A 561 3.27e+01 1i19A d.58.32.3 61522 d.145.1.1 61523 1auvA 311 3.31e+01 1auvA c.30.1.5 31723 d.142.1.3 41558 1edg 380 3.35e+01 1edg c.1.8.3 28807 1nkqA 259 3.42e+01 1ej0A 180 3.47e+01 1ej0A c.66.1.2 34179 1e20A 209 3.51e+01 1e20A c.34.1.1 31759 1furA 467 3.56e+01 1furA a.127.1.1 19403 1mh1 186 3.56e+01 1eesA c.37.1.8 32002 2liv 344 3.57e+01 2liv c.93.1.1 35708 2oatA 439 3.67e+01 2dkb c.67.1.4 34452 1qwnA 1045 3.69e+01 a.8.3.1 -414 b.30.5.6 -3517 c.6.2.1 -6058 1l2lA 457 3.69e+01 c.72.1.3 77656 1a99A 344 3.70e+01 1pot c.94.1.1 35812 1cnv 299 3.74e+01 1cnv c.1.8.5 28989 1ii2A 524 3.79e+01 c.91.1.1 66146 c.109.1.1 66147 1vhnA 318 3.80e+01 c.1.4.1 -5209 2ptd 298 3.83e+01 2plc c.1.18.2 29605 1e2fA 215 3.84e+01 3tmkA c.37.1.1 59164 1es9A 232 3.88e+01 1wab c.23.10.3 31340 1q1rA 431 3.97e+01 c.3.1.5 -6048 c.3.1.5 -6049 d.87.1.1 -10502 1b7gO 340 3.99e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907