CreatePredAlphaCost pred_alpha2k alpha11 T0245.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0245.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 3 way_back 3 dry5 10 dry6.5 20 dry8 10 dry12 5 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 2 \
	pred_alpha04 5 \
	constraints 5 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

#from try2-opt2.sheets
SheetConstraint V41 L43  	A102 H100  	hbond V41
SheetConstraint L43 S47  	V101 P97  	hbond C46
SheetConstraint G48 L55  	P96 V89  	hbond R49
SheetConstraint R49 V53  	H71 L67  	hbond I50
SheetConstraint A51 L55  	G68 S64  	hbond D54
SheetConstraint A90 Y95  	V146 R141  	hbond L92
SheetConstraint I98 C103  	A137 Y132  	hbond I99
SheetConstraint S124 I127  	I136 V133  	hbond G125

#from try2-opt2.helices
HelixConstraint Y14  	N19
HelixConstraint D24  	S36
HelixConstraint E75  	R85
HelixConstraint I106  	G120
HelixConstraint D155  	D196