# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tljA 213 4.77e-29 2ctb 307 1.14e+00 1aye c.56.5.1 33803 1b65A 375 1.17e+00 1b65A d.154.1.1 42020 2ctc 307 1.21e+00 1aye c.56.5.1 33802 1rkqA 282 1.23e+00 c.108.1.10 -6847 1f0xA 571 1.69e+00 1f0xA d.58.32.2 39483 d.145.1.1 41746 1kwgA 645 1.73e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1eps 427 1.74e+00 1eps d.68.2.2 39586 1hv8A 367 1.85e+00 1hv8A c.37.1.19 32405 c.37.1.19 32406 1kwkA 645 2.00e+00 b.71.1.1 77565 c.1.8.1 77566 c.23.16.5 77567 1m4lA 307 2.20e+00 c.56.5.1 78604 1yme 309 2.24e+00 1aye c.56.5.1 33804 1t7pA 698 2.50e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 6cpa 307 2.98e+00 1aye c.56.5.1 33816 1eqfA 280 3.12e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1k2yX 463 3.31e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1ofuX 119 4.43e+00 c.37.1.22 86976 1s98A 107 4.48e+00 1g6sA 427 4.52e+00 1eps d.68.2.2 39584 1gio 125 4.55e+00 7rsa d.5.1.1 37304 1r94A 118 4.58e+00 b.124.1.1 -4402 1p5dX 463 5.25e+00 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1rpjA 288 5.55e+00 2dri c.93.1.1 35656 1e8gA 560 8.00e+00 1qltA d.58.32.1 39455 d.145.1.1 41718 1brwA 433 9.38e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1a8q 274 1.02e+01 1brt c.69.1.12 34702 1ayyA 151 1.07e+01 1apyA d.153.1.5 42016 1agi 125 1.12e+01 7rsa d.5.1.1 37303 9gafA 295 1.19e+01 1apyA d.153.1.5 42008 1j3mA 129 1.21e+01 1gudA 288 1.24e+01 c.93.1.1 83326 1w1kA 560 1.24e+01 1p4kA 295 1.27e+01 d.153.1.5 87772 1vaoA 560 1.28e+01 1qltA d.58.32.1 39461 d.145.1.1 41724 1yptA 305 1.29e+01 1ytw c.45.1.2 32686 1fdyA 297 1.29e+01 1nal3 c.1.10.1 29071 1ytn 306 1.34e+01 1ytw c.45.1.2 32688 1lyvA 306 1.34e+01 c.45.1.2 74348 1ytw 306 1.35e+01 1ytw c.45.1.2 32689 1gz0A 253 1.39e+01 c.116.1.1 76391 d.79.3.3 76392 1pot 325 1.43e+01 1pot c.94.1.1 35807 1ts3A 194 1.46e+01 1aw7A b.40.2.2 25168 d.15.6.1 37757 2irfG 113 1.47e+01 2irfG a.4.5.23 16185 1yts 278 1.49e+01 1ytw c.45.1.2 32690 1gw5S 142 1.51e+01 d.110.4.2 70633 3tss 194 1.52e+01 1aw7A b.40.2.2 25160 d.15.6.1 37749 1qupA 222 1.58e+01 1qupA b.1.8.1 22301 d.58.17.1 39352 1aw7A 194 1.64e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1a3gA 308 1.64e+01 1daaA e.17.1.1 43286 1aye 401 1.72e+01 1aye c.56.5.1 33824 d.58.3.1 39065 1va4A 279 1.73e+01 1qltA 560 1.92e+01 1qltA d.58.32.1 39457 d.145.1.1 41720 1i1kA 309 2.11e+01 1daaA e.17.1.1 61533 1nf2A 268 2.11e+01 c.108.1.10 -6842 1f1zA 273 2.13e+01 1f1zA a.4.5.27 16081 c.52.1.16 33334 1gpjA 404 2.19e+01 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1mu5A 471 2.40e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1ni4A 365 2.61e+01 c.36.1.7 85728 1afb1 154 2.63e+01 1rtm1 1hl2A 297 2.63e+01 c.1.10.1 83581 1rhi3 236 2.69e+01 1aym3 1dtdA 303 2.72e+01 1aye c.56.5.1 33823 1l2qA 458 2.77e+01 c.1.25.1 73510 1nal1 297 2.79e+01 1nal3 1l2rA 458 2.79e+01 1nthA 458 2.79e+01 c.1.25.1 80730 1j5yA 187 2.82e+01 a.4.5.1 71592 d.94.2.1 71593 1nbwB 117 2.83e+01 c.51.3.2 80396 1o0xA 262 2.84e+01 d.127.1.1 80755 1ln1A 214 2.88e+01 d.129.3.2 74038 1e2uA 553 2.90e+01 1e1dA e.26.1.1 43362 1gntA 553 2.90e+01 e.26.1.1 70290 1rk8A 165 3.01e+01 d.58.7.1 -10018 1qysA 106 3.02e+01 unknown_sccs -13432 1clqA 903 3.18e+01 1clqA c.55.3.5 33717 e.8.1.1 43006 1hkhA 279 3.26e+01 c.69.1.12 -8342 1ufkA 254 3.33e+01 unknown_sccs -8103 1hl6A 165 3.49e+01 d.58.7.1 83609 1odkA 235 3.55e+01 c.56.2.1 86863 1pl5A 142 3.58e+01 1hgeA 328 3.58e+01 1hgeA b.19.1.2 23816 1ftrA 296 3.61e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1korA 400 3.66e+01 c.26.2.1 72824 d.210.1.1 72825 1c7gA 456 3.66e+01 c.67.1.2 -8153 1nal3 297 3.92e+01 1nal3 1ejhA 190 3.93e+01 1ejhA d.86.1.1 40147 1iyeA 309 3.97e+01 e.17.1.1 83786