# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1tljA	213	4.08e-25			
1bouB	302	2.89e-01	1bouB	c.56.6.1	33859
1b4uB	302	4.51e-01	1bouB	c.56.6.1	33861
1agjA	242	2.20e+00	1agjA	b.47.1.1	25827
1rkqA	282	6.70e+00		c.108.1.10	-6847
1tm0A	350	6.70e+00			
1knwA	425	8.83e+00		b.49.2.3	-4274
				c.1.6.1	-5229
1lr0A	129	9.35e+00		d.212.1.1	74213
1r9gA	216	9.99e+00		c.23.16.1	-6504
1qtfA	246	1.19e+01	1agjA	b.47.1.1	25830
1ixkA	315	1.24e+01		unknown_sccs	-8099
1t7pA	698	1.37e+01	1t7pA	c.55.3.5	33712
				e.8.1.1	43005
1fw1A	216	1.59e+01		a.45.1.1	60051
				c.47.1.5	60052
1hl6A	165	1.89e+01		d.58.7.1	83609
1k9vF	201	1.91e+01		c.23.16.1	68365
1fmaE	150	1.98e+01	1fmaE	d.41.5.1	38630
1gpwB	201	2.00e+01		c.23.16.1	65461
1fm0E	150	2.04e+01	1fmaE	d.41.5.1	38629
1e6bA	221	2.64e+01	1e6bA	a.45.1.1	59294
				c.47.1.5	59295
1pmd	675	2.65e+01	1pmd	d.11.1.1	37491
				d.11.1.1	37492
				d.175.1.1	42562
				e.3.1.1	42771
1cz1A	394	2.75e+01	1cz1A	c.1.8.3	28839
1eqcA	394	2.77e+01	1cz1A	c.1.8.3	28811
1a32	88	2.98e+01	1a32	a.16.1.2	16384
1kp0A	402	3.06e+01		c.55.2.1	72834
				d.127.1.1	72835
1efvA	315	3.21e+01	1efvA	c.26.2.3	31633
				c.31.1.2	31728
1pvmA	184	3.25e+01		d.37.1.1	-9612
				d.37.1.1	-9613
				unknown_sccs	-12799
1uouA	474	3.58e+01		a.46.2.1	-951
				c.27.1.1	-6642
				d.41.3.1	-9715
1lnsA	763	3.60e+01		a.40.2.1	78101
				b.18.1.13	78102
				c.69.1.21	78103
1vddA	228	3.63e+01			
1vhh	162	3.68e+01	1vhh	d.65.1.2	39550
1mwsA	646	3.68e+01		d.17.4.5	79592
				d.175.1.1	79593
				e.3.1.1	79594
1adoA	363	3.70e+01	1fbaA	c.1.10.1	29124
1dceA	567	3.71e+01	1dceA	a.118.6.1	19191
				b.7.4.1	23218
				c.10.2.2	30867
1h2xA	710	3.82e+01		b.69.7.1	76598
				c.69.1.4	76599
1q1lA	401	3.98e+01		unknown_sccs	-11166