# List of top-scoring protein chains for T0245.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j6oA 268 3.32e+00 c.1.9.12 77088 1p6kA 421 4.58e+00 d.174.1.1 -11694 1vagA 420 4.62e+00 1p6iA 421 4.63e+00 d.174.1.1 -11690 1om4A 422 4.64e+00 d.174.1.1 87067 1mmvA 419 4.64e+00 d.174.1.1 -11682 1ueaB 184 4.93e+00 1br9 b.40.3.1 25232 1ufgA 151 4.96e+00 1npyA 271 5.35e+00 c.2.1.7 85995 c.58.1.5 85996 1ivtA 122 6.25e+00 b.1.16.1 71443 1ifrA 121 6.28e+00 b.1.16.1 71203 1mi3A 322 6.43e+00 c.1.7.1 -5257 1eqfA 280 6.43e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1o7bT 98 6.86e+00 d.169.1.4 -11647 1fv1A 181 7.11e+00 1iakA b.1.1.2 21605 d.19.1.1 38179 1pywA 182 7.16e+00 b.1.1.2 -2642 d.19.1.1 -9329 1bx2A 180 7.30e+00 1iakA b.1.1.2 21609 d.19.1.1 38183 1kg0A 180 7.51e+00 b.1.1.2 72441 d.19.1.1 72442 1klgA 177 7.58e+00 b.1.1.2 72714 d.19.1.1 72715 1kluA 179 7.73e+00 b.1.1.2 72724 d.19.1.1 72725 1aqdA 192 7.75e+00 1iakA b.1.1.2 21585 d.19.1.1 38159 1a6aA 176 7.86e+00 1iakA b.1.1.2 21615 d.19.1.1 38189 1g2sA 71 9.70e+00 d.9.1.1 70149 1oioA 178 1.32e+01 b.2.3.5 -2884 1evhA 112 1.40e+01 1evhA b.55.1.4 26997 1gaqB 98 1.41e+01 1awd d.15.4.1 37679 1d4fA 431 1.56e+01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1fs7A 485 1.63e+01 1qdbA a.138.1.3 19691 1qzuA 206 1.65e+01 c.34.1.1 -6804 1r94A 118 1.69e+01 b.124.1.1 -4402 1ktdA 182 1.71e+01 b.1.1.2 72964 d.19.1.1 72965 1fs9A 507 1.73e+01 1qdbA a.138.1.3 19693 1ieaA 192 1.82e+01 1iakA b.1.1.2 21631 d.19.1.1 38205 1s98A 107 1.82e+01 1kt2A 182 1.86e+01 b.1.1.2 72951 d.19.1.1 72952 1d2bA 126 1.87e+01 1br9 b.40.3.1 25234 1r5vA 180 1.98e+01 b.1.1.2 -2645 d.19.1.1 -9337 1fngA 192 2.03e+01 1iakA b.1.1.2 59904 d.19.1.1 59905 1eb7A 323 2.07e+01 1eb7A a.3.1.5 59404 a.3.1.5 59405 1fg9C 245 2.30e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1sxjA 511 2.36e+01 1hl2A 297 2.37e+01 c.1.10.1 83581 1fdyA 297 2.51e+01 1nal3 c.1.10.1 29071 1mdmB 161 2.58e+01 a.4.5.21 79012 2gsq 202 2.63e+01 1pd21 a.45.1.1 17715 c.47.1.5 33009 1i3rA 192 2.77e+01 1iakA b.1.1.2 61620 d.19.1.1 61621 1gpjA 404 2.92e+01 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1v61A 132 2.96e+01 1g2aA 168 3.24e+01 d.167.1.1 65109 1r8oB 71 3.28e+01 1odfA 290 3.29e+01 c.37.1.6 -7045 1gvfA 286 3.30e+01 c.1.10.2 70599 1lmeA 176 3.31e+01 d.167.1.1 84629 1d4gA 430 3.34e+01 1b3rA c.2.1.4 30114 c.23.12.3 31374 1cwn 324 3.45e+01 1frb c.1.7.1 28686 1ae4 325 3.46e+01 1frb c.1.7.1 28689 1hqtA 326 3.49e+01 1frb c.1.7.1 61156 1b3rA 431 3.49e+01 1b3rA c.2.1.4 30106 c.23.12.3 31366 1qs8A 329 3.59e+01 1smrA b.50.1.2 26887 1d2rA 326 3.64e+01 1d2rB c.26.1.1 31572 1fyhB 229 3.71e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1ma3A 253 3.78e+01 c.31.1.5 78883 1i6lA 328 3.85e+01 c.26.1.1 66041