# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1tljA	213	4.60e-23			
2ctc	307	5.93e-01	1aye	c.56.5.1	33802
1e8gA	560	1.15e+00	1qltA	d.58.32.1	39455
				d.145.1.1	41718
1w1kA	560	1.19e+00			
1m4lA	307	1.58e+00		c.56.5.1	78604
1f7uA	607	2.30e+00	1bs2A	a.27.1.1	59673
				c.26.1.1	59674
				d.67.2.1	59675
1t7pA	698	2.61e+00	1t7pA	c.55.3.5	33712
				e.8.1.1	43005
1gpjA	404	3.07e+00		a.151.1.1	65451
				c.2.1.7	65452
				d.58.39.1	65453
1kwgA	645	3.51e+00		b.71.1.1	77561
				c.1.8.1	77562
				c.23.16.5	77563
1iyeA	309	3.68e+00		e.17.1.1	83786
1ftrA	296	4.85e+00	1ftrA	d.58.33.1	39485
				d.58.33.1	39486
1i1kA	309	5.41e+00	1daaA	e.17.1.1	61533
1qo7A	394	5.73e+00	1qo7A	c.69.1.11	34697
1b8oA	284	6.17e+00	1b8oA	c.56.2.1	33762
1p5dX	463	6.82e+00		c.84.1.1	-8554
				c.84.1.1	-8555
				c.84.1.1	-8556
				d.129.2.1	-11029
1ofuX	119	8.07e+00		c.37.1.22	86976
1rkqA	282	8.83e+00		c.108.1.10	-6847
1k2yX	463	9.09e+00		c.84.1.1	68063
				c.84.1.1	68064
				c.84.1.1	68065
				d.129.2.1	68066
1jeyB	565	1.29e+01	1jeqB	unknown_sccs	-4431
				unknown_sccs	-7995
2irfG	113	1.39e+01	2irfG	a.4.5.23	16185
1j5yA	187	1.57e+01		a.4.5.1	71592
				d.94.2.1	71593
1j3mA	129	1.66e+01			
1agi	125	1.67e+01	7rsa	d.5.1.1	37303
1aw7A	194	1.70e+01	1aw7A	b.40.2.2	25164
				d.15.6.1	37753
1ohvA	472	1.73e+01		c.67.1.4	-8181
1oo0B	110	1.80e+01		d.58.7.1	87183
1o0xA	262	1.89e+01		d.127.1.1	80755
1rk8A	165	1.90e+01		d.58.7.1	-10018
1p2fA	220	2.11e+01		a.4.6.1	87720
				c.23.1.1	87721
1s98A	107	2.15e+01			
3tss	194	2.21e+01	1aw7A	b.40.2.2	25160
				d.15.6.1	37749
1p4kA	295	2.30e+01		d.153.1.5	87772
9gafA	295	2.30e+01	1apyA	d.153.1.5	42008
1bd3A	243	2.39e+01	1bd3A	c.61.1.1	34098
1eqfA	280	2.47e+01	1eqfA	a.29.2.1	16972
				a.29.2.1	16973
1pjqA	457	2.90e+01		c.2.1.11	-5904
				c.90.1.1	-8611
				e.37.1.1	-12004
1brwA	433	2.90e+01	1brwA	a.46.2.1	17764
				c.27.1.1	31628
				d.41.3.1	38626
1agjA	242	2.91e+01	1agjA	b.47.1.1	25827
1a8q	274	2.92e+01	1brt	c.69.1.12	34702
1nbwB	117	3.01e+01		c.51.3.2	80396
1eudB	396	3.09e+01	2scuB	c.23.4.1	31150
				d.142.1.4	41571
1f0xA	571	3.13e+01	1f0xA	d.58.32.2	39483
				d.145.1.1	41746
1r94A	118	3.14e+01		b.124.1.1	-4402
1st0A	337	3.20e+01		unknown_sccs	-9014
				unknown_sccs	-9474
1hl2A	297	3.32e+01		c.1.10.1	83581
1v5wA	343	3.33e+01			
1sk4A	163	3.42e+01			
1lyvA	306	3.46e+01		c.45.1.2	74348
1rpjA	288	3.47e+01	2dri	c.93.1.1	35656
1uouA	474	3.75e+01		a.46.2.1	-951
				c.27.1.1	-6642
				d.41.3.1	-9715
1b65A	375	3.94e+01	1b65A	d.154.1.1	42020