# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tljA 213 7.08e-27 2ctc 307 3.35e-01 1aye c.56.5.1 33802 1m4lA 307 5.90e-01 c.56.5.1 78604 1e8gA 560 1.10e+00 1qltA d.58.32.1 39455 d.145.1.1 41718 1w1kA 560 1.83e+00 1b65A 375 2.62e+00 1b65A d.154.1.1 42020 1eqfA 280 4.16e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1kwgA 645 4.59e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1a8q 274 5.24e+00 1brt c.69.1.12 34702 1t7pA 698 5.58e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1ofuX 119 5.95e+00 c.37.1.22 86976 1ni4A 365 6.73e+00 c.36.1.7 85728 1gpjA 404 6.99e+00 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1qo7A 394 8.80e+00 1qo7A c.69.1.11 34697 1ytw 306 9.45e+00 1ytw c.45.1.2 32689 1rkqA 282 9.92e+00 c.108.1.10 -6847 1lyvA 306 1.01e+01 c.45.1.2 74348 1brwA 433 1.01e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1i1kA 309 1.02e+01 1daaA e.17.1.1 61533 1f0xA 571 1.06e+01 1f0xA d.58.32.2 39483 d.145.1.1 41746 1va4A 279 1.08e+01 1agi 125 1.19e+01 7rsa d.5.1.1 37303 1om4A 422 1.20e+01 d.174.1.1 87067 2irfG 113 1.22e+01 2irfG a.4.5.23 16185 1ftrA 296 1.31e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1rk8A 165 1.39e+01 d.58.7.1 -10018 1oo0B 110 1.56e+01 d.58.7.1 87183 1p5dX 463 1.58e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 2viuA 328 1.59e+01 1hgeA b.19.1.2 23797 1fyhB 229 1.60e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1iyeA 309 1.73e+01 e.17.1.1 83786 1k2yX 463 1.76e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1nbwB 117 2.01e+01 c.51.3.2 80396 1j5yA 187 2.05e+01 a.4.5.1 71592 d.94.2.1 71593 1hl2A 297 2.17e+01 c.1.10.1 83581 1rpjA 288 2.21e+01 2dri c.93.1.1 35656 1nal1 297 2.33e+01 1nal3 1f1zA 273 2.34e+01 1f1zA a.4.5.27 16081 c.52.1.16 33334 1dtdA 303 2.42e+01 1aye c.56.5.1 33823 1gw5S 142 2.54e+01 d.110.4.2 70633 1pl5A 142 2.55e+01 1v61A 132 2.56e+01 1o0xA 262 2.57e+01 d.127.1.1 80755 1h0pA 182 2.74e+01 b.62.1.1 76450 1oaoC 729 2.79e+01 e.26.1.3 86746 1korA 400 2.89e+01 c.26.2.1 72824 d.210.1.1 72825 1s98A 107 2.95e+01 1g6sA 427 2.99e+01 1eps d.68.2.2 39584 1afb1 154 3.05e+01 1rtm1 1a04A 215 3.09e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 9gafA 295 3.15e+01 1apyA d.153.1.5 42008 1o7jA 327 3.17e+01 c.88.1.1 81140 1p2fA 220 3.17e+01 a.4.6.1 87720 c.23.1.1 87721 1p3jA 217 3.23e+01 c.37.1.1 -6996 g.41.2.1 -12769 1izcA 339 3.24e+01 c.1.12.5 83838 1aw7A 194 3.37e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1vc4A 254 3.37e+01 c.1.2.4 -5172 1o1yA 239 3.41e+01 c.23.16.1 86554 1jsmA 325 3.56e+01 b.19.1.2 63264 3tss 194 3.60e+01 1aw7A b.40.2.2 25160 d.15.6.1 37749 1nyhA 166 3.61e+01 h.1.23.1 86403 1v5wA 343 3.75e+01 1j3mA 129 3.81e+01 1hkhA 279 3.89e+01 c.69.1.12 -8342 1v7oA 165 3.91e+01 unknown_sccs -10249 1e2uA 553 3.93e+01 1e1dA e.26.1.1 43362 1gntA 553 3.93e+01 e.26.1.1 70290