# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1tljA	213	2.05e-25			
1gpjA	404	2.90e-01		a.151.1.1	65451
				c.2.1.7	65452
				d.58.39.1	65453
1qvbA	481	1.11e+00	1qvbA	c.1.8.4	28983
1tm0A	350	3.51e+00			
1uouA	474	7.28e+00		a.46.2.1	-951
				c.27.1.1	-6642
				d.41.3.1	-9715
2gsq	202	7.82e+00	1pd21	a.45.1.1	17715
				c.47.1.5	33009
1qx2A	76	8.57e+00			
4icb	76	8.74e+00	4icb	a.39.1.1	17145
1rkqA	282	8.78e+00		c.108.1.10	-6847
1k0iA	394	1.05e+01		c.3.1.2	67942
				d.16.1.2	67943
1qhlA	227	1.07e+01	1qhlA	c.37.1.12	32382
1gdoA	240	1.21e+01	1gdoA	d.153.1.1	41804
1jx2B	315	1.22e+01		c.37.1.8	67404
1e6bA	221	1.31e+01	1e6bA	a.45.1.1	59294
				c.47.1.5	59295
1hl2A	297	1.43e+01		c.1.10.1	83581
1fw1A	216	1.50e+01		a.45.1.1	60051
				c.47.1.5	60052
1uwsA	489	1.68e+01			
1eqfA	280	1.78e+01	1eqfA	a.29.2.1	16972
				a.29.2.1	16973
1om4A	422	1.89e+01		d.174.1.1	87067
1r9gA	216	1.89e+01		c.23.16.1	-6504
1bgp	309	2.01e+01	1bgp	a.93.1.1	18690
1ceo	343	2.06e+01	1ceo	c.1.8.3	28808
1nal1	297	2.06e+01	1nal3		
1odfA	290	2.09e+01		c.37.1.6	-7045
1pbe	394	2.29e+01	1pbe	c.3.1.2	30338
				d.16.1.2	37869
1cc5	83	2.37e+01	1cc5	a.3.1.1	15901
1pvmA	184	2.50e+01		d.37.1.1	-9612
				d.37.1.1	-9613
				unknown_sccs	-12799
1a04A	215	2.69e+01	1a04A	a.4.6.2	16234
				c.23.1.1	31089
1gowA	489	2.85e+01	1qvbA	c.1.8.4	28981
1hfs	160	2.90e+01	1hfc	d.92.1.11	40370
1a53	247	3.02e+01	1a53	c.1.2.4	28564
1t7pA	698	3.11e+01	1t7pA	c.55.3.5	33712
				e.8.1.1	43005
1s1pA	331	3.16e+01		c.1.7.1	-5240
1vduA	172	3.17e+01		unknown_sccs	-1651
1oaoC	729	3.22e+01		e.26.1.3	86746
1igs	248	3.23e+01	1a53	c.1.2.4	28565
1nf2A	268	3.25e+01		c.108.1.10	-6842
1efvA	315	3.34e+01	1efvA	c.26.2.3	31633
				c.31.1.2	31728
1fsz	372	3.35e+01	1fsz	c.32.1.1	31750
				d.79.2.1	39802
1a4pA	96	3.51e+01	1b4cA	a.39.1.2	17176
1ed5A	444	3.65e+01	1nseA	d.174.1.1	42530
1d0cA	444	3.74e+01		d.174.1.1	64769
1f0xA	571	3.89e+01	1f0xA	d.58.32.2	39483
				d.145.1.1	41746
1agjA	242	3.96e+01	1agjA	b.47.1.1	25827
1bouB	302	3.97e+01	1bouB	c.56.6.1	33859
1fm0E	150	3.97e+01	1fmaE	d.41.5.1	38629