# List of top-scoring protein chains for T0244.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h5rB 293 1.12e-43 c.68.1.6 65624 1h5rA 293 1.13e-43 c.68.1.6 65623 1h5sD 293 1.25e-43 c.68.1.6 65630 1h5sA 293 3.96e-43 c.68.1.6 65627 1mp3A 292 8.68e-43 c.68.1.6 79374 1iinA 292 1.15e-42 1g0rA c.68.1.6 62447 1mp5A 292 2.10e-42 c.68.1.6 79378 1mp4A 292 7.49e-42 c.68.1.6 79376 1fxoA 293 1.64e-41 1g0rA c.68.1.6 34524 1lvwA 295 4.68e-41 c.68.1.6 84723 1mc3A 296 6.31e-41 c.68.1.6 78943 1hm9A 468 1.14e-29 b.81.1.4 65866 c.68.1.5 65867 1g97A 459 1.24e-29 1fwyA b.81.1.4 60394 c.68.1.5 60395 1fxjA 331 1.30e-28 1fwyA b.81.1.4 28062 c.68.1.5 34520 1hv9A 456 2.24e-28 1fwyA b.81.1.4 28060 c.68.1.5 34518 1jykA 254 1.06e-22 c.68.1.13 67458 1vh1A 256 1.88e-15 c.68.1.13 -8244 1h7eA 245 3.16e-13 c.68.1.13 60717 1vicA 262 1.08e-12 c.68.1.13 -8252 1h3mA 235 1.24e-11 c.68.1.13 -8228 1vgtA 238 1.28e-11 c.68.1.13 -8230 1i52A 236 1.29e-11 1i52A c.68.1.13 61767 1vgwA 231 1.88e-07 c.68.1.13 -8237 1vgzA 241 1.89e-07 c.68.1.13 -8235 1hjjA 201 3.98e-07 c.68.1.8 83487 1hjlA 201 7.70e-07 c.68.1.8 83488 1e5kA 201 1.08e-06 1fr9A c.68.1.8 34578 1fr9A 194 1.14e-06 1fr9A c.68.1.8 34579 1h4dA 201 3.49e-06 c.68.1.8 83482 1h4eA 201 8.06e-06 c.68.1.8 83483 1h4cA 201 3.12e-05 c.68.1.8 83481 1qwjA 229 4.09e-04 c.68.1.13 -8255 1eziA 228 6.79e-04 1eyrA c.68.1.13 34512 1jvgA 522 1.01e-02 c.68.1.5 77185 1jv1A 505 7.08e-02 c.68.1.5 71892 1tluA 130 7.01e-01 1riqA 465 8.50e-01 unknown_sccs -1295 d.104.1.1 -10769 1tmiA 130 1.02e+00 1gwcA 230 1.08e+00 a.45.1.1 70660 c.47.1.5 70661 1ht6A 405 1.62e+00 b.71.1.1 83629 c.1.8.1 83630 1jx6A 342 1.85e+00 c.93.1.1 67406 1kktA 511 2.36e+00 a.102.2.1 68687 1p2fA 220 2.57e+00 a.4.6.1 87720 c.23.1.1 87721 1o51A 114 4.39e+00 d.58.5.4 -10003 1rl9A 357 6.06e+00 1bygA 278 6.30e+00 1fmk d.144.1.7 41705 1p52A 357 6.51e+00 a.83.1.1 87792 d.128.1.2 87793 1b8gA 429 6.79e+00 1b8gA c.67.1.4 34499 1m7yA 435 6.82e+00 c.67.1.4 78761 1s0uA 408 6.87e+00 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1ad3A 452 7.12e+00 1ad3A c.82.1.1 35335 1frvA 264 7.14e+00 2frvA e.19.1.1 43308 1nfjA 89 7.21e+00 d.68.6.1 -10285 6cel 434 7.64e+00 1celA b.29.1.10 24279 2frvA 264 7.71e+00 2frvA e.19.1.1 43303 7cel 434 7.76e+00 1celA b.29.1.10 24282 1q2bA 434 7.87e+00 b.29.1.10 -3469 1q2eA 426 7.96e+00 b.29.1.10 -3470 1egnA 434 8.16e+00 1celA b.29.1.10 59411 4celA 434 8.63e+00 1celA b.29.1.10 24288 1gxlA 213 9.54e+00 d.215.1.1 70713 1jgjA 217 1.12e+01 1c3wA f.13.1.1 62952 1nexB 464 1.19e+01 a.158.1.1 80443 b.69.4.1 80444 1b8aA 438 1.22e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1m15A 357 1.24e+01 a.83.1.1 78368 d.128.1.2 78369 1p50A 356 1.24e+01 a.83.1.1 87786 d.128.1.2 87787 1bg0 356 1.24e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1h70A 255 1.25e+01 1h70A d.126.1.3 60711 1vj7A 393 1.26e+01 unknown_sccs -1265 unknown_sccs -9814 1pc3A 350 1.29e+01 1celA 434 1.46e+01 1celA b.29.1.10 24280 1on4A 174 1.47e+01 c.47.1.10 -7512 1d4cA 572 1.47e+01 1qjdA a.138.1.3 19698 c.3.1.4 30435 d.168.1.1 42318 1d4dA 572 1.49e+01 1qjdA a.138.1.3 19702 c.3.1.4 30439 d.168.1.1 42322 1k9aA 450 1.59e+01 b.34.2.1 72188 d.93.1.1 72189 d.144.1.7 72190 1vi1A 345 1.60e+01 unknown_sccs -8466 1gxjA 186 1.65e+01 d.215.1.1 70707 1a8y 367 1.85e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1m53A 570 1.88e+01 b.71.1.1 84805 c.1.8.1 84806 1iy9A 275 1.90e+01 c.66.1.17 76943 1eupA 403 1.93e+01 1rom a.104.1.1 18967 1dwuA 213 1.97e+01 1cjsA e.24.1.1 43355 1g6gA 127 1.98e+01 1g6gA b.26.1.2 23916 1qv9A 283 2.03e+01 unknown_sccs -6888 1f3mC 297 2.05e+01 1hcl d.144.1.7 41677 1m2bA 110 2.09e+01 c.47.1.11 78474 1pfkA 320 2.12e+01 3pfk c.89.1.1 35575 2pfkC 320 2.13e+01 3pfk c.89.1.1 35579 1sbp 310 2.29e+01 1sbp c.94.1.1 35760 1eu8A 409 2.41e+01 1eu8A c.94.1.1 59502 1c4rA 182 2.48e+01 1c4rA b.29.1.4 24229 1h2sA 225 2.48e+01 f.13.1.1 76578 1qpdA 278 2.50e+01 1fmk d.144.1.7 41687 1c7nA 399 2.50e+01 1d2fA c.67.1.3 34413 1k2yX 463 2.52e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1lrv 244 2.59e+01 1lrv a.118.1.5 19146 1v84A 253 2.63e+01 1sefA 274 2.67e+01 1mkiA 330 2.69e+01 e.3.1.2 84994 1h68A 239 2.74e+01 f.13.1.1 60664 1jlwA 219 2.81e+01 a.45.1.1 71741 c.47.1.5 71742 1oxsC 353 2.90e+01 b.40.6.3 87519 c.37.1.12 87520 1i1wA 303 2.90e+01 c.1.8.3 76732 1avoB 140 2.92e+01 1avoB 1p22A 435 2.97e+01 a.158.1.1 87715 b.69.4.1 87716 1un2A 197 2.98e+01 unknown_sccs -7442 1nd4A 264 2.99e+01 d.144.1.6 -11381 1ei6A 406 3.02e+01 unknown_sccs -8436 1j4oA 151 3.04e+01 b.26.1.2 66386 1k6aA 303 3.09e+01 c.1.8.3 72081 1eluA 390 3.10e+01 1elqA c.67.1.3 34434 1kamA 194 3.11e+01 c.26.1.3 72254 1ffyA 917 3.19e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1g5qA 181 3.19e+01 1g5qA c.34.1.1 60288 1p5dX 463 3.31e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1jioA 403 3.31e+01 a.104.1.1 66747 1e6bA 221 3.32e+01 1e6bA a.45.1.1 59294 c.47.1.5 59295 1g3gA 164 3.34e+01 1g6gA b.26.1.2 23918 1m2aA 110 3.35e+01 c.47.1.11 78472 1ny5A 387 3.40e+01 c.23.1.1 -6419 c.37.1.20 -7219 1bplA 189 3.44e+01 1bli c.1.8.1 28703 2ffhA 425 3.48e+01 1ng1 a.24.13.1 16965 a.36.1.1 17122 c.37.1.10 32276 1lvbA 243 3.55e+01 b.47.1.3 78234 1jipA 403 3.55e+01 a.104.1.1 66748 1iznB 277 3.59e+01 e.43.1.2 83848 1g63A 181 3.73e+01 1g5qA c.34.1.1 60299 1eeuA 114 3.80e+01 32c2A b.1.1.1 20546 1a2oA 349 3.91e+01 1chd c.23.1.1 31120 c.40.1.1 32479 1n2tA 386 3.92e+01 c.67.1.3 79858 1cycA 103 3.98e+01