# This file is the result of combining several RDB files, specifically # T0244.t04.dssp-ebghstl.rdb (weight 1.53986) # T0244.t04.stride-ebghtl.rdb (weight 1.24869) # T0244.t04.str2.rdb (weight 1.54758) # T0244.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0244.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0244 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0244.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1685 # # ============================================ # Comments from T0244.t04.stride-ebghtl.rdb # ============================================ # TARGET T0244 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0244.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1685 # # ============================================ # Comments from T0244.t04.str2.rdb # ============================================ # TARGET T0244 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0244.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1685 # # ============================================ # Comments from T0244.t04.alpha.rdb # ============================================ # TARGET T0244 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0244.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1685 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 A 0.1100 0.0770 0.8130 2 A 0.1653 0.1086 0.7261 3 I 0.1363 0.1493 0.7143 4 N 0.0981 0.1464 0.7555 5 T 0.0856 0.1483 0.7661 6 K 0.0884 0.0995 0.8122 7 V 0.1946 0.0399 0.7655 8 K 0.3246 0.0139 0.6615 9 K 0.6430 0.0101 0.3468 10 A 0.9087 0.0037 0.0875 11 V 0.9280 0.0033 0.0688 12 I 0.9237 0.0034 0.0728 13 P 0.8508 0.0101 0.1391 14 V 0.5504 0.0302 0.4194 15 A 0.2446 0.0716 0.6838 16 G 0.1342 0.0777 0.7881 17 L 0.1061 0.1525 0.7414 18 G 0.1071 0.2193 0.6736 19 T 0.1223 0.3092 0.5685 20 R 0.1436 0.2425 0.6139 21 M 0.1487 0.2035 0.6478 22 L 0.0995 0.0767 0.8238 23 P 0.0713 0.2703 0.6584 24 A 0.0718 0.2873 0.6409 25 T 0.0875 0.2767 0.6358 26 K 0.0688 0.2007 0.7305 27 A 0.0937 0.1076 0.7986 28 I 0.1220 0.0323 0.8458 29 P 0.1359 0.0415 0.8226 30 K 0.1229 0.4310 0.4461 31 E 0.1511 0.4635 0.3854 32 M 0.2180 0.4570 0.3251 33 L 0.3238 0.2200 0.4563 34 P 0.2249 0.2170 0.5581 35 L 0.1087 0.4087 0.4826 36 V 0.0551 0.2227 0.7222 37 D 0.0319 0.0858 0.8822 38 K 0.0752 0.1941 0.7307 39 P 0.1386 0.3872 0.4742 40 L 0.0760 0.8352 0.0888 41 I 0.0445 0.9008 0.0547 42 Q 0.0253 0.9271 0.0475 43 Y 0.0165 0.9359 0.0477 44 V 0.0163 0.9243 0.0595 45 V 0.0047 0.9601 0.0353 46 N 0.0047 0.9609 0.0345 47 E 0.0047 0.9609 0.0345 48 C 0.0047 0.9594 0.0359 49 I 0.0051 0.9480 0.0470 50 A 0.0059 0.8823 0.1119 51 A 0.0403 0.3239 0.6359 52 G 0.0482 0.0171 0.9347 53 I 0.0988 0.0127 0.8885 54 T 0.2580 0.0512 0.6908 55 E 0.8701 0.0091 0.1207 56 I 0.9310 0.0032 0.0658 57 V 0.9337 0.0032 0.0630 58 L 0.9283 0.0033 0.0685 59 V 0.8777 0.0045 0.1178 60 T 0.6176 0.0134 0.3690 61 H 0.1874 0.0306 0.7821 62 S 0.0628 0.0912 0.8460 63 S 0.0554 0.1280 0.8166 64 K 0.0263 0.5392 0.4345 65 N 0.0184 0.7674 0.2142 66 S 0.0263 0.8435 0.1302 67 I 0.0150 0.9080 0.0770 68 E 0.0121 0.9209 0.0670 69 N 0.0094 0.8893 0.1013 70 H 0.0102 0.8656 0.1242 71 F 0.0268 0.7263 0.2469 72 D 0.0193 0.6686 0.3121 73 T 0.0244 0.5383 0.4373 74 S 0.0415 0.5000 0.4585 75 F 0.0252 0.6695 0.3054 76 E 0.0395 0.7403 0.2202 77 L 0.0391 0.8087 0.1522 78 E 0.0259 0.8499 0.1242 79 A 0.0269 0.8404 0.1327 80 M 0.0221 0.8570 0.1209 81 L 0.0212 0.8604 0.1185 82 E 0.0215 0.8352 0.1434 83 K 0.0247 0.7918 0.1835 84 R 0.0324 0.7474 0.2202 85 V 0.0386 0.6772 0.2842 86 K 0.0259 0.8358 0.1382 87 R 0.0210 0.9053 0.0737 88 Q 0.0243 0.9019 0.0739 89 L 0.0231 0.9008 0.0761 90 L 0.0215 0.8992 0.0793 91 D 0.0153 0.8823 0.1023 92 E 0.0089 0.8890 0.1021 93 V 0.0134 0.8457 0.1409 94 Q 0.0143 0.7932 0.1925 95 S 0.0216 0.6521 0.3262 96 I 0.0578 0.3921 0.5501 97 C 0.0908 0.0734 0.8358 98 P 0.0517 0.1001 0.8482 99 P 0.0330 0.1483 0.8187 100 H 0.0892 0.0722 0.8386 101 V 0.3105 0.0134 0.6761 102 T 0.6507 0.0084 0.3408 103 I 0.8849 0.0071 0.1080 104 M 0.8961 0.0100 0.0940 105 Q 0.9008 0.0088 0.0905 106 V 0.8225 0.0230 0.1545 107 R 0.6288 0.0393 0.3319 108 Q 0.3160 0.0864 0.5976 109 G 0.1258 0.1309 0.7433 110 L 0.1072 0.1794 0.7134 111 A 0.0859 0.2434 0.6706 112 K 0.0517 0.2187 0.7296 113 G 0.0581 0.1718 0.7701 114 L 0.0408 0.5904 0.3688 115 G 0.0095 0.8975 0.0930 116 H 0.0059 0.9415 0.0526 117 A 0.0057 0.9528 0.0415 118 V 0.0068 0.9505 0.0427 119 L 0.0084 0.9277 0.0639 120 C 0.0098 0.8308 0.1593 121 A 0.0131 0.8143 0.1726 122 H 0.0241 0.7678 0.2081 123 P 0.0156 0.7872 0.1972 124 V 0.0299 0.6978 0.2723 125 V 0.1009 0.3475 0.5516 126 G 0.0531 0.1152 0.8317 127 D 0.0358 0.0522 0.9120 128 E 0.0868 0.0167 0.8966 129 P 0.2622 0.0123 0.7256 130 V 0.8731 0.0048 0.1221 131 A 0.9275 0.0035 0.0691 132 V 0.9269 0.0033 0.0698 133 I 0.8574 0.0064 0.1361 134 L 0.4617 0.0127 0.5256 135 P 0.1464 0.0686 0.7850 136 D 0.0942 0.1076 0.7982 137 V 0.1485 0.1366 0.7149 138 I 0.1463 0.1205 0.7333 139 L 0.1444 0.1443 0.7113 140 D 0.1147 0.2106 0.6747 141 E 0.0559 0.3830 0.5611 142 Y 0.0625 0.3008 0.6366 143 E 0.0733 0.2140 0.7127 144 S 0.0405 0.2945 0.6650 145 D 0.0570 0.2550 0.6880 146 L 0.0895 0.1693 0.7412 147 S 0.0597 0.1390 0.8013 148 Q 0.0149 0.7495 0.2356 149 D 0.0102 0.8106 0.1791 150 N 0.0103 0.8517 0.1380 151 L 0.0047 0.9574 0.0379 152 A 0.0047 0.9600 0.0354 153 E 0.0047 0.9597 0.0357 154 M 0.0050 0.9578 0.0373 155 I 0.0047 0.9570 0.0382 156 R 0.0049 0.9524 0.0426 157 R 0.0053 0.9435 0.0512 158 F 0.0074 0.9215 0.0710 159 D 0.0066 0.8592 0.1341 160 E 0.0092 0.7224 0.2684 161 T 0.0463 0.2222 0.7315 162 G 0.0365 0.0301 0.9335 163 H 0.1366 0.0183 0.8451 164 S 0.6702 0.0072 0.3226 165 Q 0.8811 0.0050 0.1139 166 I 0.9136 0.0041 0.0823 167 M 0.9035 0.0045 0.0919 168 V 0.8492 0.0057 0.1451 169 E 0.7411 0.0071 0.2518 170 P 0.5775 0.0086 0.4139 171 V 0.2156 0.0300 0.7544 172 A 0.1275 0.0688 0.8037 173 D 0.1389 0.0701 0.7910 174 V 0.1122 0.1859 0.7020 175 T 0.1633 0.1720 0.6647 176 A 0.2585 0.1509 0.5906 177 Y 0.3701 0.0544 0.5755 178 G 0.5447 0.0278 0.4275 179 V 0.8028 0.0123 0.1849 180 V 0.8580 0.0080 0.1340 181 D 0.7867 0.0077 0.2055 182 C 0.5082 0.0606 0.4312 183 K 0.2237 0.0869 0.6894 184 G 0.2136 0.1393 0.6471 185 V 0.4392 0.0691 0.4916 186 E 0.6412 0.0370 0.3218 187 L 0.6101 0.0266 0.3633 188 A 0.3113 0.0227 0.6660 189 P 0.1231 0.0705 0.8064 190 G 0.0466 0.0540 0.8994 191 E 0.0815 0.0776 0.8409 192 S 0.1721 0.0498 0.7781 193 V 0.3806 0.0139 0.6055 194 P 0.6300 0.0096 0.3604 195 M 0.8805 0.0067 0.1128 196 V 0.8486 0.0284 0.1230 197 G 0.8903 0.0090 0.1007 198 V 0.8974 0.0080 0.0946 199 V 0.8723 0.0092 0.1184 200 E 0.7895 0.0104 0.2001 201 K 0.3672 0.0128 0.6200 202 P 0.1431 0.0240 0.8330 203 K 0.0723 0.0683 0.8594 204 A 0.0251 0.4399 0.5350 205 D 0.0308 0.4347 0.5345 206 V 0.0642 0.2886 0.6472 207 A 0.0739 0.0561 0.8700 208 P 0.0624 0.1751 0.7625 209 S 0.0754 0.2230 0.7016 210 N 0.0912 0.2399 0.6689 211 L 0.2936 0.2075 0.4990 212 A 0.5054 0.1361 0.3585 213 I 0.5918 0.1044 0.3038 214 V 0.5682 0.1063 0.3254 215 G 0.4899 0.1255 0.3846 216 R 0.6268 0.1457 0.2274 217 Y 0.7403 0.1030 0.1568 218 V 0.7229 0.0785 0.1987 219 L 0.5151 0.0644 0.4205 220 S 0.1547 0.0472 0.7981 221 A 0.0058 0.7951 0.1991 222 D 0.0068 0.8050 0.1882 223 I 0.0079 0.8672 0.1249 224 W 0.0076 0.9245 0.0678 225 P 0.0058 0.9363 0.0579 226 L 0.0060 0.9299 0.0642 227 L 0.0068 0.9004 0.0928 228 A 0.0125 0.7307 0.2568 229 K 0.0180 0.4362 0.5458 230 T 0.0653 0.0425 0.8922 231 P 0.0556 0.0182 0.9262 232 P 0.0440 0.1097 0.8464 233 G 0.0415 0.1214 0.8370 234 A 0.0437 0.2050 0.7513 235 G 0.0445 0.1349 0.8206 236 D 0.0726 0.1491 0.7783 237 E 0.2076 0.2709 0.5215 238 I 0.3279 0.2866 0.3855 239 Q 0.2964 0.2687 0.4349 240 L 0.1309 0.5197 0.3495 241 T 0.0512 0.6846 0.2642 242 D 0.0181 0.8143 0.1676 243 A 0.0061 0.9230 0.0709 244 I 0.0050 0.9537 0.0413 245 D 0.0047 0.9584 0.0369 246 M 0.0050 0.9585 0.0366 247 L 0.0048 0.9536 0.0416 248 I 0.0050 0.9191 0.0759 249 E 0.0075 0.7381 0.2544 250 K 0.0430 0.3336 0.6234 251 E 0.0527 0.0423 0.9050 252 T 0.1128 0.0189 0.8683 253 V 0.5034 0.0101 0.4865 254 E 0.7862 0.0088 0.2050 255 A 0.9025 0.0057 0.0918 256 Y 0.9003 0.0056 0.0941 257 H 0.8803 0.0052 0.1145 258 M 0.7287 0.0162 0.2551 259 K 0.3465 0.0391 0.6144 260 G 0.1467 0.0421 0.8112 261 K 0.3208 0.0476 0.6316 262 S 0.4838 0.0505 0.4657 263 H 0.3137 0.0795 0.6069 264 D 0.2490 0.0862 0.6648 265 C 0.1480 0.1317 0.7203 266 G 0.0879 0.0860 0.8260 267 N 0.0759 0.0841 0.8401 268 K 0.0265 0.7276 0.2460 269 L 0.0103 0.8720 0.1176 270 G 0.0113 0.9012 0.0875 271 Y 0.0093 0.9390 0.0517 272 M 0.0128 0.9422 0.0451 273 Q 0.0102 0.9458 0.0440 274 A 0.0103 0.9466 0.0431 275 F 0.0134 0.9391 0.0475 276 V 0.0144 0.9381 0.0475 277 E 0.0147 0.9305 0.0548 278 Y 0.0244 0.8820 0.0937 279 G 0.0424 0.7643 0.1933 280 I 0.1015 0.6235 0.2750 281 R 0.1323 0.4709 0.3968 282 H 0.0775 0.3924 0.5302 283 N 0.0319 0.4489 0.5192 284 T 0.0368 0.4530 0.5103 285 L 0.0686 0.3650 0.5664 286 G 0.0541 0.2489 0.6971 287 T 0.0410 0.5775 0.3815 288 E 0.0523 0.6549 0.2928 289 F 0.0298 0.7570 0.2132 290 K 0.0099 0.9118 0.0782 291 A 0.0101 0.9132 0.0767 292 W 0.0144 0.9089 0.0767 293 L 0.0222 0.9062 0.0715 294 E 0.0279 0.8916 0.0805 295 E 0.0334 0.8617 0.1050 296 E 0.0404 0.7568 0.2027 297 M 0.0661 0.4576 0.4763 298 G 0.0493 0.1624 0.7883 299 I 0.0911 0.1047 0.8042 300 K 0.0807 0.0573 0.8619 301 K 0.0654 0.0439 0.8906