# List of top-scoring protein chains for T0244.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h5sA 293 1.48e-42 c.68.1.6 65627 1h5rB 293 2.02e-42 c.68.1.6 65624 1h5rA 293 2.08e-42 c.68.1.6 65623 1h5sD 293 3.59e-42 c.68.1.6 65630 1mp3A 292 2.95e-41 c.68.1.6 79374 1iinA 292 4.24e-41 1g0rA c.68.1.6 62447 1mp5A 292 1.14e-40 c.68.1.6 79378 1fxoA 293 3.30e-40 1g0rA c.68.1.6 34524 1mp4A 292 3.93e-40 c.68.1.6 79376 1mc3A 296 2.40e-39 c.68.1.6 78943 1lvwA 295 1.21e-38 c.68.1.6 84723 1hm9A 468 5.26e-32 b.81.1.4 65866 c.68.1.5 65867 1g97A 459 5.65e-32 1fwyA b.81.1.4 60394 c.68.1.5 60395 1fxjA 331 1.21e-30 1fwyA b.81.1.4 28062 c.68.1.5 34520 1hv9A 456 1.29e-30 1fwyA b.81.1.4 28060 c.68.1.5 34518 1vh1A 256 7.63e-26 c.68.1.13 -8244 1vicA 262 2.49e-24 c.68.1.13 -8252 1h7eA 245 2.72e-23 c.68.1.13 60717 1i52A 236 2.09e-21 1i52A c.68.1.13 61767 1vgtA 238 2.40e-21 c.68.1.13 -8230 1h3mA 235 2.57e-21 c.68.1.13 -8228 1jykA 254 6.76e-20 c.68.1.13 67458 1jvgA 522 2.09e-17 c.68.1.5 77185 1jv1A 505 3.15e-17 c.68.1.5 71892 1vgzA 241 9.24e-17 c.68.1.13 -8235 1vgwA 231 1.18e-16 c.68.1.13 -8237 1hjjA 201 2.24e-12 c.68.1.8 83487 1hjlA 201 3.83e-12 c.68.1.8 83488 1e5kA 201 6.30e-12 1fr9A c.68.1.8 34578 1fr9A 194 7.51e-12 1fr9A c.68.1.8 34579 1h4dA 201 1.18e-11 c.68.1.8 83482 1h4eA 201 4.87e-11 c.68.1.8 83483 1h4cA 201 1.20e-10 c.68.1.8 83481 1qwjA 229 4.16e-10 c.68.1.13 -8255 1eziA 228 8.13e-09 1eyrA c.68.1.13 34512 1ht6A 405 9.13e-03 b.71.1.1 83629 c.1.8.1 83630 1cr6A 554 1.77e+00 1cr6B c.108.1.2 43337 c.69.1.11 34687 2hgsA 474 2.25e+00 2hgsA c.30.1.4 31722 d.142.1.6 75997 1o51A 114 2.31e+00 d.58.5.4 -10003 1o97D 320 2.40e+00 c.26.2.3 81233 c.31.1.2 81234 1vj5A 555 2.65e+00 c.108.1.2 -6813 c.69.1.11 -8339 1oxsC 353 3.04e+00 b.40.6.3 87519 c.37.1.12 87520 1f3mC 297 4.07e+00 1hcl d.144.1.7 41677 1bmlC 362 4.47e+00 1bmlC d.15.5.1 37729 d.15.5.1 37730 d.15.5.1 37731 1eluA 390 4.56e+00 1elqA c.67.1.3 34434 1n2tA 386 4.69e+00 c.67.1.3 79858 1ji2A 585 5.09e+00 b.1.18.2 71672 b.71.1.1 71673 c.1.8.1 71674 1ffyA 917 5.30e+00 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1jf6A 585 5.33e+00 b.1.18.2 71650 b.71.1.1 71651 c.1.8.1 71652 1oxxK 353 5.59e+00 b.40.6.3 -3969 c.37.1.12 -7187 1tluA 130 5.74e+00 1jf5A 585 6.01e+00 b.1.18.2 71644 b.71.1.1 71645 c.1.8.1 71646 1b8gA 429 6.03e+00 1b8gA c.67.1.4 34499 1m7yA 435 6.05e+00 c.67.1.4 78761 1c7nA 399 6.18e+00 1d2fA c.67.1.3 34413 1j9lA 247 6.31e+00 c.106.1.1 62762 1c4rA 182 6.64e+00 1c4rA b.29.1.4 24229 1jl8A 585 7.00e+00 b.1.18.2 63163 b.71.1.1 63164 c.1.8.1 63165 1tmiA 130 7.02e+00 1g1yA 585 7.57e+00 1bvzA b.1.18.2 60210 b.71.1.1 60211 c.1.8.1 60212 1qdmA 478 8.75e+00 1smrA a.64.1.2 18141 b.50.1.2 26838 1pzdA 322 8.94e+00 unknown_sccs -2848 unknown_sccs -10778 1j6uA 469 9.70e+00 c.5.1.1 77094 c.59.1.1 77095 c.72.2.1 77096 1n4aA 252 1.01e+01 c.92.2.2 85317 1n2zA 245 1.01e+01 c.92.2.2 79865 1q7xA 108 1.08e+01 b.36.1.1 -3735 1gveA 327 1.09e+01 c.1.7.1 70597 1i4nA 251 1.14e+01 c.1.2.4 71114 1omzA 293 1.15e+01 c.68.1.15 87093 1p2fA 220 1.15e+01 a.4.6.1 87720 c.23.1.1 87721 1un2A 197 1.20e+01 unknown_sccs -7442 1broA 277 1.26e+01 1brt c.69.1.12 34700 1st3 269 1.27e+01 1gci c.41.1.1 32504 1a8uA 277 1.36e+01 1brt c.69.1.12 34703 1lh0A 213 1.40e+01 c.61.1.1 73896 1bwzA 274 1.45e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 1dwqA 261 1.45e+01 1qj4A c.69.1.20 34808 8abp 306 1.46e+01 8abp c.93.1.1 35647 1fit 147 1.49e+01 1fit d.13.1.1 37499 1p22A 435 1.49e+01 a.158.1.1 87715 b.69.4.1 87716 1nb4A 570 1.50e+01 e.8.1.4 85509 1mjeA 649 1.51e+01 a.170.1.1 79193 a.171.1.1 79194 b.40.4.3 79195 b.40.4.3 79196 b.40.4.3 79197 1ut7A 171 1.55e+01 unknown_sccs -4724 1q98A 165 1.56e+01 c.47.1.10 -7499 1vjnA 220 1.59e+01 unknown_sccs -11458 1sto 213 1.60e+01 1opr c.61.1.1 34092 1eh9A 558 1.61e+01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1e0cA 271 1.62e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 1kr1A 273 1.64e+01 c.1.8.5 68846 1zrn 232 1.67e+01 1qq5A c.108.1.1 43323 1ehaA 558 1.68e+01 1ehaA b.1.18.2 21859 b.71.1.1 27786 c.1.8.1 28773 1jud 232 1.72e+01 1qq5A c.108.1.1 43325 1qv9A 283 1.77e+01 unknown_sccs -6888 1kqzA 273 1.79e+01 c.1.8.5 68844 1hg3A 225 1.85e+01 1hg3A c.1.1.1 61025 1bygA 278 1.85e+01 1fmk d.144.1.7 41705 1r8nA 185 1.88e+01 1qpdA 278 1.94e+01 1fmk d.144.1.7 41687 1v02A 565 1.97e+01 1gxlA 213 1.97e+01 d.215.1.1 70713 1r4xA 275 1.97e+01 unknown_sccs -2846 unknown_sccs -10776 1pyfA 312 1.99e+01 c.1.7.1 -5251 1eysM 324 2.03e+01 6prcM f.26.1.1 43516 1puiA 210 2.04e+01 c.37.1.8 88292 1bap 306 2.05e+01 8abp c.93.1.1 35654 1j1iA 296 2.05e+01 c.69.1.10 83977 1k77A 260 2.09e+01 c.1.15.5 72096 1v02E 565 2.09e+01 1gveB 327 2.09e+01 c.1.7.1 70598 1ox6A 555 2.16e+01 c.1.2.1 87505 c.23.16.1 87506 1a4sA 503 2.17e+01 1bpwA c.82.1.1 35361 1p3dA 475 2.18e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1v03A 565 2.21e+01 1v4vA 376 2.23e+01 c.87.1.3 -8583 1h70A 255 2.25e+01 1h70A d.126.1.3 60711 1evlA 401 2.27e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1h05A 146 2.28e+01 c.23.13.1 76433 1apa 266 2.28e+01 1qi7A d.165.1.1 42205 2fhi 147 2.36e+01 1fit d.13.1.1 37505 1id1A 153 2.37e+01 1id1A c.2.1.9 62286 1otjA 283 2.42e+01 b.82.2.5 -4893 1abe 306 2.44e+01 8abp c.93.1.1 35648 1cqgA 105 2.56e+01 1erv c.47.1.1 32756 1s5pA 235 2.56e+01 c.31.1.5 -6774 1brt 277 2.58e+01 1brt c.69.1.12 34699 1ipjA 416 2.60e+01 b.82.1.2 71258 b.82.1.2 71259 1kr0A 273 2.62e+01 c.1.8.5 68845 1jvnA 554 2.63e+01 c.1.2.1 67355 c.23.16.1 67356 2pvaA 345 2.65e+01 3pvaA d.153.1.3 41850 1tis 286 2.65e+01 1bkpA d.117.1.1 41040 1e6bA 221 2.66e+01 1e6bA a.45.1.1 59294 c.47.1.5 59295 1q5pA 268 2.69e+01 c.41.1.1 -7294 1gci 269 2.70e+01 1gci c.41.1.1 32503 1iavA 268 2.72e+01 1gci c.41.1.1 62125 2frvB 536 2.73e+01 1h2rL e.18.1.1 43291 1mpt 269 2.75e+01 1gci c.41.1.1 32541 1ah2 269 2.81e+01 1gci c.41.1.1 32542 1gxjA 186 2.87e+01 d.215.1.1 70707 1m53A 570 2.88e+01 b.71.1.1 84805 c.1.8.1 84806 1m7tA 107 2.94e+01 c.47.1.1 78745 1cycA 103 2.97e+01 1akaA 401 2.97e+01 1ajsA c.67.1.1 34258 1nfjA 89 3.00e+01 d.68.6.1 -10285 1rfmA 344 3.01e+01 c.122.1.1 -8032 1clh 166 3.01e+01 2cpl b.62.1.1 27512 1trs 105 3.02e+01 1erv c.47.1.1 32753 1k6aA 303 3.02e+01 c.1.8.3 72081 1kvt 338 3.03e+01 1xel c.2.1.2 29798 1ovmA 552 3.07e+01 c.31.1.3 87461 c.36.1.5 87462 c.36.1.9 87463 1j2aA 166 3.16e+01 b.62.1.1 -4538 1c9mA 268 3.18e+01 1gci c.41.1.1 32506 1ipkA 416 3.27e+01 b.82.1.2 71264 b.82.1.2 71265 1mkiA 330 3.34e+01 e.3.1.2 84994 1v0wA 506 3.38e+01 1g8jA 825 3.41e+01 1g8jA b.52.2.2 26924 c.81.1.1 35332 1jnlL 211 3.43e+01 b.1.1.1 66958 b.1.1.2 66959 1g8kA 825 3.52e+01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1g6sA 427 3.54e+01 1eps d.68.2.2 39584 1q36A 427 3.61e+01 d.68.2.2 -10304 1d02A 202 3.66e+01 1d02A c.52.1.8 33313 1s70B 299 3.70e+01 1jzuA 157 3.72e+01 b.60.1.1 84271 1frvB 536 3.72e+01 1h2rL e.18.1.1 43296 1ukz 203 3.73e+01 1zin c.37.1.1 31840 1oziA 99 3.84e+01 b.36.1.1 -3736 1aj8A 371 3.84e+01 1aj8A a.103.1.1 18900 1eps 427 3.85e+01 1eps d.68.2.2 39586 1jc9A 269 3.87e+01 d.171.1.1 66490 1f0iA 504 3.90e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1rvv1 154 3.94e+01 1rvv1 3trx 105 3.95e+01 1erv c.47.1.1 32757 1d5gA 96 3.97e+01 b.36.1.1 70080