# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mp4A 292 1.71e-31 c.68.1.6 79376 1fxoA 293 2.09e-31 1g0rA c.68.1.6 34524 1lvwA 295 1.50e-30 c.68.1.6 84723 1g97A 459 2.50e-28 1fwyA b.81.1.4 60394 c.68.1.5 60395 1hm9A 468 3.70e-28 b.81.1.4 65866 c.68.1.5 65867 1hv9A 456 5.70e-27 1fwyA b.81.1.4 28060 c.68.1.5 34518 1fxjA 331 6.68e-27 1fwyA b.81.1.4 28062 c.68.1.5 34520 1vicA 262 7.50e-22 c.68.1.13 -8252 1h7eA 245 5.00e-21 c.68.1.13 60717 1i52A 236 6.40e-19 1i52A c.68.1.13 61767 1jykA 254 1.08e-18 c.68.1.13 67458 1jv1A 505 3.34e-14 c.68.1.5 71892 1vgwA 231 6.52e-13 c.68.1.13 -8237 1e5kA 201 3.46e-12 1fr9A c.68.1.8 34578 1eziA 228 1.44e-09 1eyrA c.68.1.13 34512 1omzA 293 9.93e-03 c.68.1.15 87093 1v84A 253 2.15e-02 1drw 273 2.87e-02 1drw c.2.1.3 30057 d.81.1.3 39972 1oxsC 353 5.79e-02 b.40.6.3 87519 c.37.1.12 87520 1c7nA 399 8.37e-02 1d2fA c.67.1.3 34413 1ii7A 333 8.60e-02 1ii7A d.159.1.4 62415 1ga8A 311 9.76e-02 1ga8A c.68.1.4 34516 1qg8A 255 1.03e-01 1qg8A c.68.1.1 34505 1lqtA 456 1.23e-01 c.3.1.1 74198 c.4.1.1 74199 1oxxK 353 1.45e-01 b.40.6.3 -3969 c.37.1.12 -7187 1o0uA 429 3.26e-01 c.118.1.1 80743 1j0aA 325 3.44e-01 c.79.1.1 83871 1n3yA 198 4.19e-01 c.62.1.1 79976 1jvnA 555 4.35e-01 c.1.2.1 67355 c.23.16.1 67356 1g38A 393 4.36e-01 2admA c.66.1.27 60235 1qv9A 283 4.75e-01 unknown_sccs -6888 1opr 213 5.18e-01 1opr c.61.1.1 34091 1fxmA 302 7.59e-01 1taxA 1k77A 260 8.11e-01 c.1.15.5 72096 1vhnA 318 9.49e-01 c.1.4.1 -5209 1lh0A 213 1.06e+00 c.61.1.1 73896 1ht6A 405 1.16e+00 b.71.1.1 83629 c.1.8.1 83630 1h6dA 433 1.18e+00 c.2.1.3 65656 d.81.1.5 65657 1o1zA 234 1.18e+00 c.1.18.3 86555 1ofgA 381 1.21e+00 1ofgA c.2.1.3 30064 d.81.1.5 39979 1fit 147 1.27e+00 1fit d.13.1.1 37499 1gegA 256 1.51e+00 1ybvA c.2.1.2 29888 1dbqA 289 1.84e+00 1qpzA c.93.1.1 35666 1k28D 391 1.86e+00 b.106.1.1 68052 b.106.1.1 68053 1q1gA 276 1.90e+00 c.56.2.1 -7846 1lmeA 176 1.95e+00 d.167.1.1 84629 1rvgA 305 2.19e+00 c.1.10.2 -5500 1o94A 729 2.40e+00 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1atzA 189 2.51e+00 1atzA c.62.1.1 34132 1jmvA 141 2.53e+00 c.26.2.4 66897 1uzbA 516 2.61e+00 c.82.1.1 -8552 2tmdA 729 2.69e+00 2tmdA c.1.4.1 28616 c.3.1.1 30317 c.4.1.1 30602 1g291 372 2.70e+00 1g291 1fpzA 212 2.83e+00 1fpzA c.45.1.1 59976 1bif 469 2.89e+00 1bif c.37.1.7 31961 c.60.1.4 34003 1a4sA 503 2.94e+00 1bpwA c.82.1.1 35361 1djnA 729 3.02e+00 2tmdA c.1.4.1 28612 c.3.1.1 30313 c.4.1.1 30598 1s1pA 331 3.07e+00 c.1.7.1 -5240 1b74A 254 3.16e+00 1b74A c.78.2.1 35264 c.78.2.1 35265 1ede 310 3.20e+00 1b6g c.69.1.8 34662 1of8A 370 3.30e+00 c.1.10.4 -5508 2fhi 147 3.52e+00 1fit d.13.1.1 37505 1bwzA 274 3.63e+00 1bwzA d.21.1.1 38337 d.21.1.1 38338 1gqzA 274 3.68e+00 d.21.1.1 83311 d.21.1.1 83312 1b6g 310 3.80e+00 1b6g c.69.1.8 34661 1lc0A 294 3.91e+00 c.2.1.3 73823 d.81.1.4 73824 1eu8A 409 3.98e+00 1eu8A c.94.1.1 59502 1p3dA 475 4.01e+00 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1oroA 213 4.04e+00 1opr c.61.1.1 34093 1a0cA 438 4.12e+00 1a0cA c.1.15.3 29529 1nal1 297 4.64e+00 1nal3 1gg1A 350 4.68e+00 1qr7A c.1.10.4 29187 1rxxA 421 4.71e+00 unknown_sccs -10982 1dkuA 317 5.05e+00 1dkuA c.61.1.2 34118 c.61.1.2 34119 1korA 400 5.13e+00 c.26.2.1 72824 d.210.1.1 72825 1i1wA 303 5.50e+00 c.1.8.3 76732 1shuX 182 5.76e+00 c.62.1.1 -7982 1v4vA 376 5.87e+00 c.87.1.3 -8583 1n8fA 350 5.96e+00 c.1.10.4 85397 1jflA 228 6.02e+00 c.78.2.1 71656 c.78.2.1 71657 1pymA 295 6.33e+00 1pymA c.1.12.7 29308 1rkqA 282 6.50e+00 c.108.1.10 -6847 1q33A 292 6.53e+00 d.113.1.1 -10901 1gy8A 397 6.57e+00 c.2.1.2 83376 1p2fA 220 6.68e+00 a.4.6.1 87720 c.23.1.1 87721 1hl2A 297 6.76e+00 c.1.10.1 83581 1kgsA 225 7.09e+00 a.4.6.1 68596 c.23.1.1 68597 1hh1A 143 7.10e+00 1gefA c.52.1.18 61036 1htjF 210 7.13e+00 1htjF a.91.1.1 61254 1l2tA 235 7.44e+00 c.37.1.12 73514 1qwgA 251 7.45e+00 unknown_sccs -5678 1mumA 295 7.74e+00 c.1.12.7 85108 1b0pA 1231 8.39e+00 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1bfd 528 8.52e+00 1bfd c.31.1.3 31745 c.36.1.5 31801 c.36.1.9 31802 1inlA 296 8.77e+00 c.66.1.17 66220 3tgl 269 8.91e+00 3tgl c.69.1.17 34733 1o17A 345 8.94e+00 a.46.2.1 80765 c.27.1.1 80766 1gdeA 389 9.01e+00 c.67.1.1 60456 1lrzA 426 9.20e+00 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1km4A 247 9.24e+00 c.1.2.3 72740 3pte 349 9.33e+00 3pte e.3.1.1 42687 1cydA 244 9.64e+00 1cydA c.2.1.2 29825 1n5nA 180 9.69e+00 d.167.1.1 85336 1gcuA 295 1.01e+01 1gcuA c.2.1.3 30063 d.81.1.4 39978 1ek1A 554 1.01e+01 1cr6B c.108.1.2 43335 c.69.1.11 34685 1mplA 349 1.01e+01 e.3.1.1 79387 1ni4A 365 1.02e+01 c.36.1.7 85728 1kekA 1231 1.02e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1tib 269 1.03e+01 3tgl c.69.1.17 34738 1hvbA 349 1.04e+01 3pte e.3.1.1 42686 1kcxA 518 1.05e+01 b.92.1.3 -5074 c.1.9.6 -5426 1mf7A 194 1.05e+01 c.62.1.1 84937 1h7mA 102 1.06e+01 d.79.3.1 83485 1dvjA 246 1.12e+01 1dvjA c.1.2.3 28546 1e8cA 498 1.12e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1f20A 435 1.13e+01 b.43.4.1 64932 c.25.1.4 64933 1cf9A 753 1.13e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1h3nA 878 1.16e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1p80A 753 1.16e+01 c.23.16.3 -6547 e.5.1.1 -11840 1jeyB 565 1.17e+01 1jeqB unknown_sccs -4431 unknown_sccs -7995 1ni9A 338 1.20e+01 e.7.1.2 85739 1b5tA 275 1.20e+01 1b5tA c.1.23.1 29676 1mvoA 136 1.22e+01 c.23.1.1 79513 4xis 387 1.30e+01 4xis c.1.15.3 29421 1m7vA 363 1.33e+01 d.174.1.1 78748 3xis 387 1.37e+01 4xis c.1.15.3 29423 1vjnA 220 1.38e+01 unknown_sccs -11458 1d4oA 184 1.41e+01 1d4oA c.31.1.4 31748 1n2zA 245 1.41e+01 c.92.2.2 79865 1fp1D 372 1.41e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1hzpA 335 1.41e+01 1hn9A c.95.1.1 61455 c.95.1.1 61456 1ny1A 240 1.41e+01 c.6.2.3 86395 1n57A 291 1.43e+01 c.23.16.2 85328 1cf2O 337 1.45e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1muwA 386 1.47e+01 c.1.15.3 79495 1gt6A 269 1.48e+01 c.69.1.17 76342 1qnrA 344 1.48e+01 1qnoA c.1.8.3 28834 1odzA 386 1.49e+01 c.1.8.3 86889 1akz 223 1.51e+01 3eugA c.18.1.1 31007 1nni1 174 1.51e+01 1upaA 573 1.52e+01 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 2gsaA 432 1.52e+01 2gsaA c.67.1.4 34446 1pjhA 280 1.57e+01 c.14.1.3 -6229 1e0cA 271 1.59e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 1ngvA 534 1.60e+01 c.111.1.2 85698 1ed8A 449 1.60e+01 1b8jA c.76.1.1 34988 1thfD 253 1.62e+01 1thfD c.1.2.1 28535 1fts 295 1.80e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1iv3A 152 1.81e+01 d.79.5.1 76828 1puiA 210 1.81e+01 c.37.1.8 88292 1byrA 155 1.84e+01 1byrA d.136.1.1 41450 1oyc 400 1.85e+01 1oyc c.1.4.1 28603 1un8A 552 1.87e+01 unknown_sccs -1942 c.32.1.2 -6792 d.79.2.2 -10401 1pvmA 184 1.88e+01 d.37.1.1 -9612 d.37.1.1 -9613 unknown_sccs -12799 1uok 558 1.90e+01 1uok b.71.1.1 27801 c.1.8.1 28788 1ea7A 310 1.92e+01 c.41.1.1 70086 1gci 269 1.92e+01 1gci c.41.1.1 32503 1o5kA 306 1.93e+01 c.1.10.1 -5482 1geeA 261 1.95e+01 c.2.1.2 -5814 1j96A 323 1.99e+01 c.1.7.1 71616 1q1hA 110 2.00e+01 unknown_sccs -262 1bs4A 168 2.04e+01 1bs4A d.167.1.1 42287 1pixA 587 2.08e+01 c.14.1.4 -6282 1ptmA 329 2.10e+01 unknown_sccs -8456 1gxjA 186 2.13e+01 d.215.1.1 70707 2pth 193 2.14e+01 2pth c.56.3.1 33793 1gcoA 261 2.15e+01 1ybvA c.2.1.2 29884 1bqcA 302 2.18e+01 1bqcA c.1.8.3 28831 1bg4 302 2.24e+01 1taxA c.1.8.3 28806 1i6aA 219 2.27e+01 c.94.1.1 61827 1ewkA 490 2.37e+01 1ewkA c.93.1.1 35712 2ran 316 2.41e+01 1avc a.65.1.1 18170 1avk 638 2.41e+01 1a2vA b.30.2.1 24410 d.17.2.1 38047 d.17.2.1 38048 1k32A 1045 2.42e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1v1rA 400 2.45e+01 1ivnA 190 2.47e+01 c.23.10.5 83719 2dri 271 2.54e+01 2dri c.93.1.1 35637 2pfkA 320 2.60e+01 3pfk c.89.1.1 35577 1wdnA 226 2.62e+01 1lst c.94.1.1 35816 1g2aA 168 2.62e+01 d.167.1.1 65109 1oq9A 363 2.62e+01 a.25.1.2 87257 1k7hA 476 2.67e+01 c.76.1.1 72101 1ad1A 266 2.69e+01 1aj2 c.1.21.1 29668 1mjfA 281 2.70e+01 c.66.1.17 79198 1i9zA 347 2.74e+01 1i9yA d.151.1.2 62102 1jx7A 117 2.74e+01 c.114.1.1 77195 1csn 298 2.75e+01 1csn d.144.1.7 41664 1f5aA 513 2.76e+01 1fa0B a.160.1.1 75835 d.218.1.3 75836 d.58.16.1 39337 1s0uA 408 2.77e+01 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1iznB 277 2.78e+01 e.43.1.2 83848 1obwA 175 2.81e+01 2prd b.40.5.1 25416 1a99A 344 2.83e+01 1pot c.94.1.1 35812 1dbiA 280 2.85e+01 1gci c.41.1.1 32543 1hnuA 280 2.87e+01 1hnoA c.14.1.3 61096 1c3jA 351 2.89e+01 1c3jA c.87.1.1 35459 1h05A 146 2.95e+01 c.23.13.1 76433 1b5eA 246 2.98e+01 1b5eA d.117.1.1 41056 1a8b 318 3.00e+01 1avc a.65.1.1 18171 8abp 306 3.02e+01 8abp c.93.1.1 35647 1ltzA 297 3.04e+01 d.178.1.1 74254 1b4kA 337 3.07e+01 1b4kA c.1.10.3 29184 1gcb 454 3.10e+01 3gcb d.3.1.1 37034 1b0uA 262 3.11e+01 1b0uA c.37.1.12 32370 1gz6A 319 3.11e+01 c.2.1.2 76410 1lnsA 763 3.14e+01 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1q16B 512 3.15e+01 d.58.1.5 -9938 1p5zB 263 3.17e+01 c.37.1.1 87815 1uuqA 440 3.19e+01 c.1.8.3 -5321 1d8wA 426 3.24e+01 1de5A c.1.15.2 29394 1pyfA 312 3.26e+01 c.1.7.1 -5251 1uch 230 3.26e+01 1uch d.3.1.6 37129 1c4rA 182 3.32e+01 1c4rA b.29.1.4 24229 1hdoA 206 3.33e+01 1he2A c.2.1.2 60965 1ep3B 262 3.39e+01 1ep2B b.43.4.2 25664 c.25.1.3 31554 1mzhA 225 3.40e+01 c.1.10.1 79698 1v1aA 309 3.41e+01 c.72.1.1 -8400 1thm 279 3.41e+01 1gci c.41.1.1 32544 1vhsA 175 3.42e+01 d.108.1.1 -10794 1jd5A 124 3.44e+01 g.52.1.1 66544 1sxjE 354 3.48e+01 1n8nA 212 3.55e+01 unknown_sccs -6830 1cqxA 403 3.59e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1e6wA 260 3.62e+01 1e6wA c.2.1.2 59326 1l2lA 457 3.65e+01 c.72.1.3 77656 1i60A 278 3.73e+01 c.1.15.4 71118 1r4vA 171 3.75e+01 unknown_sccs -1221 1j1iA 296 3.76e+01 c.69.1.10 83977 1d0iA 156 3.76e+01 2dhqA c.23.13.1 31383 1vh7A 265 3.77e+01 c.1.2.1 -5159 1l6sA 323 3.78e+01 c.1.10.3 73627 1dbtA 239 3.80e+01 1dbtA c.1.2.3 28539 1ceo 343 3.84e+01 1ceo c.1.8.3 28808 1f0kA 364 3.87e+01 1f0kA c.87.1.2 35465 1iso 416 3.93e+01 1iso c.77.1.1 35065 1nlfA 279 3.95e+01 c.37.1.11 85850 1fjgI 128 3.96e+01 1fjfI d.14.1.1 37559 1914 232 3.99e+01 1914 d.49.1.1 83028 d.49.1.1 83029