# List of top-scoring protein chains for T0243.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hssA 124 1.04e+00 1bea a.52.1.2 17819 1hmjA 78 1.31e+00 d.78.1.1 39752 1b4m 134 1.32e+00 1hmt b.60.1.2 27222 1opbA 135 1.32e+00 1hmt b.60.1.2 27216 1kqwA 134 1.87e+00 b.60.1.2 72887 1suvE 345 5.44e+00 unknown_sccs -13257 1vduA 172 6.60e+00 unknown_sccs -1651 5rxn 54 6.96e+00 1rb9 g.41.5.1 45225 1c6yA 99 7.92e+00 1hvc b.50.1.1 26670 1gnwA 211 8.54e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 2vitC 282 8.69e+00 1hgeA b.19.1.2 23808 1o7fA 469 9.22e+00 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1o9dA 260 9.32e+00 a.118.7.1 86689 1dgnA 89 9.45e+00 1dgnA a.77.1.3 18436 1p4sA 181 9.61e+00 c.37.1.1 -7000 1eae 243 9.79e+00 1eaf c.43.1.1 32625 1dpd 243 9.90e+00 1eaf c.43.1.1 32624 1dpc 243 1.00e+01 1eaf c.43.1.1 32619 1dpb 243 1.01e+01 1eaf c.43.1.1 32618 1h76A 696 1.15e+01 c.94.1.2 65699 c.94.1.2 65700 1kgsA 225 1.15e+01 a.4.6.1 68596 c.23.1.1 68597 1omsA 121 1.24e+01 unknown_sccs -8993 1a3wA 500 1.25e+01 1a49A b.58.1.1 27060 c.1.12.1 29288 c.49.1.1 33142 1jnfA 676 1.28e+01 1cb6A c.94.1.2 63196 c.94.1.2 63197 1jxcA 68 1.28e+01 g.3.7.5 77201 1n3lA 372 1.31e+01 c.26.1.1 79966 1g91A 77 1.38e+01 1b3aA d.9.1.1 60389 1lm5A 214 1.47e+01 d.211.2.1 74029 1lk0A 131 1.47e+01 c.44.1.1 73948 1p9yA 121 1.49e+01 unknown_sccs -8996 1rxiA 131 1.51e+01 1ljlA 131 1.51e+01 c.44.1.1 73939 1jf8A 131 1.54e+01 c.44.1.1 66621 1dgsA 667 1.57e+01 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1qv9A 283 1.60e+01 unknown_sccs -6888 1who 96 1.73e+01 1who b.7.3.1 23215 1v9pA 584 1.81e+01 a.60.2.2 -1017 b.40.4.6 -3952 d.142.2.2 -11248 1c03A 168 2.05e+01 1qspA a.24.10.2 16635 1ftrA 296 2.25e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1qspA 165 2.35e+01 1qspA a.24.10.2 16639 1c02A 166 2.37e+01 1qspA a.24.10.2 16633 1oxkA 166 2.38e+01 a.24.10.2 -601 1hlrA 907 2.42e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1dl3A 203 2.42e+01 1nsj c.1.2.4 28561 1be7 54 2.43e+01 1rb9 g.41.5.1 45232 1nsj 205 2.53e+01 1nsj c.1.2.4 28560 1baiA 124 2.73e+01 2rspB b.50.1.1 26773 1mat 264 2.75e+01 1c24A d.127.1.1 41152 2matA 264 2.75e+01 1c24A d.127.1.1 41146 1grwA 126 2.78e+01 b.1.11.2 70391 1c24A 263 2.78e+01 1c24A d.127.1.1 41148 3matA 265 2.78e+01 1c24A d.127.1.1 41149 4matA 278 2.89e+01 1c24A d.127.1.1 41150 1c09A 54 3.00e+01 1rb9 g.41.5.1 45228 1cl1A 395 3.01e+01 1cl2A c.67.1.3 34395 1uflA 116 3.15e+01 d.58.5.1 -9977 2mspA 126 3.21e+01 1mspA b.1.11.2 22335 2pbg 468 3.22e+01 1e70M c.1.8.4 28948 1pbgA 468 3.22e+01 1e70M c.1.8.4 28946 1ljuA 130 3.29e+01 c.44.1.1 73944 1pwaA 162 3.30e+01 b.42.1.1 -4009 1fa2A 498 3.33e+01 1byb c.1.8.1 28797 1ig0A 319 3.51e+01 1ig0A b.82.6.1 62354 c.100.1.1 62355 1b2jA 54 3.59e+01 1rb9 g.41.5.1 45231 1jb0E 75 3.99e+01 1pse b.34.4.2 62824