# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1cl2A	395	3.61e+00	1cl2A	c.67.1.3	34397
1cl1A	395	4.26e+00	1cl2A	c.67.1.3	34395
1ig0A	319	5.03e+00	1ig0A	b.82.6.1	62354
				c.100.1.1	62355
1jgsA	138	5.82e+00		a.4.5.28	66683
1mat	264	6.45e+00	1c24A	d.127.1.1	41152
1vk5A	157	7.72e+00			
1cdwA	179	7.88e+00	1ytbA	d.129.1.1	41212
				d.129.1.1	41213
4matA	278	8.08e+00	1c24A	d.127.1.1	41150
1c24A	263	8.08e+00	1c24A	d.127.1.1	41148
2matA	264	8.09e+00	1c24A	d.127.1.1	41146
1hssA	124	1.00e+01	1bea	a.52.1.2	17819
1di0A	158	1.25e+01	1di0A	c.16.1.1	30957
1h67A	108	1.37e+01		a.40.1.1	65643
1h1dA	221	1.52e+01		c.66.1.1	83452
1ytbA	180	1.59e+01	1ytbA	d.129.1.1	41276
				d.129.1.1	41277
1d4fA	431	1.60e+01	1b3rA	c.2.1.4	30110
				c.23.12.3	31370
1b3rA	431	1.68e+01	1b3rA	c.2.1.4	30106
				c.23.12.3	31366
1jfvA	131	1.96e+01		c.44.1.1	66654
1jf8A	131	1.98e+01		c.44.1.1	66621
1j0wA	103	1.99e+01		b.55.1.2	-4364
2hpaA	342	2.13e+01	1cviA	c.60.1.2	33985
1lmiA	131	2.20e+01		b.1.19.1	78098
1f47B	144	2.26e+01	1f46A	d.129.4.1	59645
1cviA	342	2.32e+01	1cviA	c.60.1.2	33989
1fo1A	271	2.33e+01	1fo1A	c.10.2.3	30869
				d.58.7.2	39213
1li4A	432	2.36e+01		c.2.1.4	84616
				c.23.12.3	84617
1n6zA	105	2.40e+01		unknown_sccs	85369
1nd6A	354	2.42e+01		c.60.1.2	80407
1djxB	624	2.47e+01	1djxB	a.39.1.7	17343
				b.7.1.1	23160
				c.1.18.1	29588
1kqfB	294	2.47e+01		d.58.1.5	75900
				f.23.22.1	75901
1oheA	348	2.49e+01		c.45.1.1	87013
				c.45.1.1	87014
1js8A	394	2.64e+01		a.86.1.1	67219
				b.112.1.1	67220
1ct9A	553	2.66e+01	1ct9A	c.26.2.1	31616
				d.153.1.1	41834
1lnzA	342	2.69e+01		b.117.1.1	78112
				c.37.1.8	78113
1o9lA	481	2.90e+01		unknown_sccs	81242
				unknown_sccs	81241
1oivA	191	2.92e+01		c.37.1.8	-7074
1a7aA	432	2.99e+01	1b3rA	c.2.1.4	30104
				c.23.12.3	31364
1aky	221	3.12e+01	1zin	c.37.1.1	31896
				g.41.2.1	45197
1ffkG	145	3.28e+01	1ffkG	c.21.1.1	31035
1jj2I	145	3.28e+01	1ffkG	c.21.1.1	63094
1f46A	140	3.28e+01	1f46A	d.129.4.1	59643
1gpmA	525	3.30e+01	1gpmA	c.23.16.1	31405
				c.26.2.1	31608
				d.52.2.1	38826
1a04A	215	3.59e+01	1a04A	a.4.6.2	16234
				c.23.1.1	31089
1k75A	434	3.71e+01		c.82.1.2	68253
1im4A	221	3.81e+01		unknown_sccs	62581
1tyfA	193	3.88e+01	1tyfA	c.14.1.1	30885
1aba	87	3.92e+01	1aba	c.47.1.1	32760
1l0qA	391	3.97e+01		b.1.3.1	77644
				b.69.2.3	77645