# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hssA 124 3.67e-01 1bea a.52.1.2 17819 1opbA 135 6.18e-01 1hmt b.60.1.2 27216 1opaA 135 7.11e-01 1hmt b.60.1.2 27214 4rxn 54 1.48e+00 1rb9 g.41.5.1 45226 1kqwA 134 1.77e+00 b.60.1.2 72887 1p9yA 121 1.86e+00 unknown_sccs -8996 1di0A 158 3.19e+00 1di0A c.16.1.1 30957 1oksA 56 3.40e+00 unknown_sccs -426 2occI 73 3.47e+00 2occI f.23.3.1 43523 1th8A 145 3.78e+00 1v54I 73 3.78e+00 f.23.3.1 -12108 3kvt 115 4.01e+00 1t1dA d.42.1.2 38642 1jkgA 140 4.49e+00 d.17.4.2 66795 1dgnA 89 4.92e+00 1dgnA a.77.1.3 18436 1jn5A 140 5.36e+00 d.17.4.2 66921 1jb0E 75 6.67e+00 1pse b.34.4.2 62824 1ub9A 100 6.81e+00 a.4.5.28 -231 1cm9A 74 7.05e+00 1b3aA d.9.1.1 37405 1jfvA 131 7.84e+00 c.44.1.1 66654 1qnnA 191 8.00e+00 1avmA a.2.11.1 15792 d.44.1.1 38755 1pzwA 80 8.61e+00 unknown_sccs -12740 1jxcA 68 8.65e+00 g.3.7.5 77201 1qv9A 283 8.71e+00 unknown_sccs -6888 1jf8A 131 9.11e+00 c.44.1.1 66621 1bmw 96 9.46e+00 1who b.7.3.1 23217 1j7iA 264 1.18e+01 1j7iA d.144.1.6 62694 1cxzB 86 1.19e+01 1cxzB a.2.6.1 15705 1who 96 1.20e+01 1who b.7.3.1 23215 1vduA 172 1.23e+01 unknown_sccs -1651 1pwaA 162 1.28e+01 b.42.1.1 -4009 1aonO 97 1.33e+01 b.35.1.1 24642 1jgsA 138 1.33e+01 a.4.5.28 66683 1qo0D 196 1.34e+01 1qo0D c.23.1.3 31125 1vk5A 157 1.35e+01 1vi0A 206 1.40e+01 a.4.1.9 -206 a.121.1.1 -1659 1f7wA 144 1.43e+01 1f46A d.129.4.1 59679 1raxA 115 1.49e+01 1lfdA d.15.1.5 37626 1uesA 191 1.52e+01 1gnwA 211 1.59e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1iro 54 1.72e+01 1rb9 g.41.5.1 45223 1nal1 297 1.74e+01 1nal3 1b4cA 92 1.77e+01 1b4cA a.39.1.2 17169 1lmiA 131 1.84e+01 b.1.19.1 78098 1sedA 117 1.84e+01 1dd5A 185 1.94e+01 1dd5A d.67.3.1 39564 1fdyA 297 1.99e+01 1nal3 c.1.10.1 29071 1lxdA 100 2.03e+01 1lfdA d.15.1.5 37624 1nal3 297 2.04e+01 1nal3 1fd9A 213 2.11e+01 1fd9A d.26.1.1 59771 1j0wA 103 2.23e+01 b.55.1.2 -4364 1mg4A 113 2.25e+01 d.15.11.1 84953 1a4pA 96 2.31e+01 1b4cA a.39.1.2 17176 1aoiF 87 2.45e+01 1aoiB a.22.1.1 16471 1lfdA 87 2.66e+01 1lfdA d.15.1.5 37622 1dpb 243 2.68e+01 1eaf c.43.1.1 32618 1nglA 179 2.82e+01 1nglA b.60.1.1 27146 2rgf 97 2.82e+01 1lfdA d.15.1.5 37627 1j30A 144 2.94e+01 a.25.1.1 -650 1kzkA 99 3.02e+01 b.50.1.1 73371 1s3jA 155 3.05e+01 a.4.5.28 -227 1bx4A 345 3.13e+01 1bx4A c.72.1.1 34935 1b06A 210 3.15e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 1h7zA 194 3.18e+01 1qhvA b.21.1.1 60733 1f47B 144 3.20e+01 1f46A d.129.4.1 59645 1eaf 243 3.28e+01 1eaf c.43.1.1 32617 1i1gA 141 3.29e+01 a.4.5.32 65982 d.58.4.2 65983 2bb8 71 3.33e+01 2bb8 d.10.1.1 37480 1djxB 624 3.35e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1grwA 126 3.39e+01 b.1.11.2 70391 1mvfD 82 3.40e+01 b.129.1.1 85143 1jfkA 134 3.44e+01 a.39.1.5 66639 1b3aA 67 3.50e+01 1b3aA d.9.1.1 37410 1ub4C 85 3.56e+01 b.129.1.1 88401 1aba 87 3.65e+01 1aba c.47.1.1 32760 1ct9A 553 3.65e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 2kaiA 80 3.73e+01 2pkaA b.47.1.2 26306 1lnwA 147 3.78e+01 a.4.5.28 78104 1kgsA 225 3.94e+01 a.4.6.1 68596 c.23.1.1 68597