# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1djxB 624 9.16e-01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1dzlA 505 1.10e+00 1dzlA b.121.6.1 23586 1mwxA 646 1.21e+00 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1lt3A 240 1.79e+00 1lt3A d.166.1.1 42230 1j7lA 264 1.86e+00 d.144.1.6 62697 1jf8A 131 4.00e+00 c.44.1.1 66621 1s3jA 155 4.23e+00 a.4.5.28 -227 1t95A 240 4.65e+00 1th8A 145 4.79e+00 1hssA 124 4.85e+00 1bea a.52.1.2 17819 1rg9A 383 4.92e+00 d.130.1.1 -11057 d.130.1.1 -11058 d.130.1.1 -11059 1f9fA 83 4.95e+00 1f9fA d.58.8.1 39224 1gppA 237 4.98e+00 b.86.1.2 76262 1n6zA 105 5.59e+00 unknown_sccs 85369 1s5dA 240 6.32e+00 d.166.1.1 -11563 1obbA 480 6.62e+00 c.2.1.5 86760 d.162.1.2 86761 1f46A 140 7.07e+00 1f46A d.129.4.1 59643 1co4A 42 8.78e+00 1co4A g.47.1.1 45347 1gtdA 85 9.97e+00 d.58.45.1 76344 1j27A 102 1.06e+01 unknown_sccs -10116 1lmiA 131 1.09e+01 b.1.19.1 78098 1pwaA 162 1.11e+01 b.42.1.1 -4009 1r8hA 87 1.18e+01 d.58.8.1 -10041 1fm2B 520 1.21e+01 1fm2B 1qhxA 178 1.40e+01 1qhsA c.37.1.3 31936 1dw0A 112 1.45e+01 1dw0A a.3.1.1 15911 1p9qC 256 1.47e+01 1s5lA 344 1.52e+01 1btn 106 1.55e+01 1btn b.55.1.1 26952 1pysA 350 1.55e+01 1pysA d.104.1.1 40775 1gx3A 284 1.65e+01 d.3.1.5 70678 1ryjA 70 1.66e+01 d.15.3.2 -9179 3kvt 115 1.69e+01 1t1dA d.42.1.2 38642 1who 96 1.71e+01 1who b.7.3.1 23215 1mp9A 198 1.74e+01 a.74.1.2 -1127 a.74.1.2 -1128 1l8aA 886 1.79e+01 c.36.1.6 73678 c.36.1.10 73677 c.48.1.1 73679 1oksA 56 1.79e+01 unknown_sccs -426 1ogoX 574 1.81e+01 unknown_sccs -3237 unknown_sccs -4783 1vdeA 454 2.02e+01 1vdeA b.86.1.2 28378 d.95.2.2 40581 d.95.2.2 40582 1ltsA 185 2.05e+01 1lt3A d.166.1.1 42229 1kafA 108 2.09e+01 d.199.1.1 68372 1di0A 158 2.10e+01 1di0A c.16.1.1 30957 1p8kZ 254 2.13e+01 d.95.2.1 -10648 d.95.2.1 -10649 1aonO 97 2.32e+01 b.35.1.1 24642 1lfpA 249 2.32e+01 e.39.1.1 73885 1vjtA 483 2.42e+01 c.2.1.5 -5941 d.162.1.2 -11508 1st9A 143 2.46e+01 c.47.1.10 -7503 1mw7A 240 2.50e+01 e.39.1.1 79557 1bm9A 122 2.62e+01 1bm9A a.4.5.7 16116 1m4uA 206 2.66e+01 g.17.1.7 78625 1pc6A 146 2.66e+01 unknown_sccs -11739 1qv9A 283 2.70e+01 unknown_sccs -6888 1bea 127 2.73e+01 1bea a.52.1.2 17826 1nxuA 333 2.76e+01 c.122.1.1 86389 1gpc 218 2.82e+01 1gpc b.40.4.7 25393 1pzwA 80 2.84e+01 unknown_sccs -12740 1q5yA 85 2.90e+01 unknown_sccs -10081 1fxd 58 3.04e+01 1fxd d.58.1.1 38941 1b7yA 350 3.09e+01 1pysA d.104.1.1 40776 1tyfA 193 3.18e+01 1tyfA c.14.1.1 30885 1oniA 137 3.19e+01 d.79.1.1 87144 1om1A 332 3.20e+01 d.144.1.7 -11318 1b4bA 71 3.24e+01 1b4aA d.74.2.1 39718 1p65A 73 3.31e+01 unknown_sccs -10331 1ofuX 119 3.41e+01 c.37.1.22 86976 1vjqA 79 3.49e+01 unknown_sccs -13478 1cm9A 74 3.52e+01 1b3aA d.9.1.1 37405 1jj2R 84 3.53e+01 1ffkP d.12.1.1 63103 1pb7A 292 3.57e+01 c.94.1.1 88025 1m2rA 327 3.66e+01 d.144.1.7 84760 1s72S 85 3.73e+01 1o0pA 104 3.85e+01 d.58.7.1 86535 1rtm1 149 3.91e+01 1rtm1