# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1i1qA	520	2.18e+00	1qdlA	d.161.1.1	61543
1pwaA	162	2.20e+00		b.42.1.1	-4009
1n6zA	105	3.16e+00		unknown_sccs	85369
1f46A	140	4.38e+00	1f46A	d.129.4.1	59643
1ftrA	296	4.66e+00	1ftrA	d.58.33.1	39485
				d.58.33.1	39486
1t95A	240	5.07e+00			
1hssA	124	5.15e+00	1bea	a.52.1.2	17819
1ig0A	319	5.73e+00	1ig0A	b.82.6.1	62354
				c.100.1.1	62355
1tyfA	193	7.12e+00	1tyfA	c.14.1.1	30885
1l0qA	391	8.89e+00		b.1.3.1	77644
				b.69.2.3	77645
1jlnA	297	9.17e+00	1pty	c.45.1.2	63172
1ct9A	553	9.41e+00	1ct9A	c.26.2.1	31616
				d.153.1.1	41834
1lt3A	240	9.42e+00	1lt3A	d.166.1.1	42230
1djxB	624	9.53e+00	1djxB	a.39.1.7	17343
				b.7.1.1	23160
				c.1.18.1	29588
1vk5A	157	9.71e+00			
1qv9A	283	1.05e+01		unknown_sccs	-6888
1p9qC	256	1.08e+01			
1q5yA	85	1.09e+01		unknown_sccs	-10081
1vjuA	309	1.13e+01		unknown_sccs	-9594
1kkhA	317	1.17e+01		d.14.1.5	72645
				d.58.26.3	72646
1kqfB	294	1.24e+01		d.58.1.5	75900
				f.23.22.1	75901
1lmiA	131	1.26e+01		b.1.19.1	78098
1iugA	352	1.56e+01		c.67.1.3	-8176
1cc1L	498	1.68e+01	1h2rL	e.18.1.1	43301
1kaeA	434	1.73e+01		c.82.1.2	72247
1j26A	112	1.85e+01			
1ryjA	70	1.86e+01		d.15.3.2	-9179
1who	96	1.94e+01	1who	b.7.3.1	23215
1jf8A	131	2.03e+01		c.44.1.1	66621
1ooyA	481	2.05e+01		unknown_sccs	-6867
				unknown_sccs	-6873
1gppA	237	2.50e+01		b.86.1.2	76262
1nsj	205	2.60e+01	1nsj	c.1.2.4	28560
1i2aA	219	2.63e+01		e.24.1.1	-12012
1om1A	332	2.65e+01		d.144.1.7	-11318
1gx3A	284	2.85e+01		d.3.1.5	70678
1g13A	162	3.02e+01	1g13A	b.95.1.1	60194
1dzlA	505	3.06e+01	1dzlA	b.121.6.1	23586
1pu5A	164	3.10e+01			
1aba	87	3.21e+01	1aba	c.47.1.1	32760
1itwA	741	3.23e+01		c.77.1.2	76793
1js8A	394	3.27e+01		a.86.1.1	67219
				b.112.1.1	67220
1mz4A	137	3.32e+01		a.3.1.1	-150
1qorA	327	3.44e+01	1qorA	b.35.1.2	24766
				c.2.1.1	29782
1n7fA	97	3.46e+01		b.36.1.1	-3746
1cl1A	395	3.50e+01	1cl2A	c.67.1.3	34395
1amuA	563	3.78e+01	1amuA	e.23.1.1	43351
1pbyB	337	3.81e+01		b.69.2.2	-4611
1aua	296	3.88e+01	1aua	a.5.3.1	16290
				c.13.1.1	30882
1m2rA	327	3.98e+01		d.144.1.7	84760