# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1cl1A	395	3.41e+00	1cl2A	c.67.1.3	34395
1pwaA	162	6.70e+00		b.42.1.1	-4009
1vk5A	157	8.80e+00			
1f46A	140	8.89e+00	1f46A	d.129.4.1	59643
1c24A	263	9.71e+00	1c24A	d.127.1.1	41148
1hx6A	394	1.14e+01	1cjdA	b.121.2.1	58995
				b.121.2.1	58996
1n6zA	105	1.15e+01		unknown_sccs	85369
1hssA	124	1.16e+01	1bea	a.52.1.2	17819
1ig0A	319	1.17e+01	1ig0A	b.82.6.1	62354
				c.100.1.1	62355
1ooyA	481	1.41e+01		unknown_sccs	-6867
				unknown_sccs	-6873
1sviA	195	1.55e+01			
1h1dA	221	1.76e+01		c.66.1.1	83452
1l0qA	391	1.87e+01		b.1.3.1	77644
				b.69.2.3	77645
1kaeA	434	1.92e+01		c.82.1.2	72247
1ftrA	296	1.92e+01	1ftrA	d.58.33.1	39485
				d.58.33.1	39486
1aba	87	2.21e+01	1aba	c.47.1.1	32760
1jf8A	131	2.22e+01		c.44.1.1	66621
1djxB	624	2.36e+01	1djxB	a.39.1.7	17343
				b.7.1.1	23160
				c.1.18.1	29588
1kqfB	294	2.40e+01		d.58.1.5	75900
				f.23.22.1	75901
1vjuA	309	2.46e+01		unknown_sccs	-9594
1di0A	158	2.48e+01	1di0A	c.16.1.1	30957
1n0wA	243	2.64e+01		c.37.1.11	79772
1who	96	2.91e+01	1who	b.7.3.1	23215
1t95A	240	2.96e+01			
1tyfA	193	3.04e+01	1tyfA	c.14.1.1	30885
1oivA	191	3.29e+01		c.37.1.8	-7074
1vduA	172	3.29e+01		unknown_sccs	-1651
1bx4A	345	3.59e+01	1bx4A	c.72.1.1	34935
1j26A	112	3.61e+01			
1qhxA	178	3.66e+01	1qhsA	c.37.1.3	31936
1v5wA	343	3.75e+01			
1mz4A	137	3.81e+01		a.3.1.1	-150
1p9qC	256	3.83e+01