# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ig0A	319	3.62e+00	1ig0A	b.82.6.1	62354
				c.100.1.1	62355
1c24A	263	6.04e+00	1c24A	d.127.1.1	41148
1oivA	191	7.32e+00		c.37.1.8	-7074
1dmtA	696	7.88e+00	1dmtA	d.92.1.4	40296
1mz4A	137	9.28e+00		a.3.1.1	-150
1i24A	404	1.01e+01		c.2.1.2	83663
1cm9A	74	1.01e+01	1b3aA	d.9.1.1	37405
1cl1A	395	1.12e+01	1cl2A	c.67.1.3	34395
1pwaA	162	1.18e+01		b.42.1.1	-4009
1qv9A	283	1.22e+01		unknown_sccs	-6888
1dfmA	223	1.44e+01	1d2iA	c.52.1.5	33295
2hpaA	342	1.47e+01	1cviA	c.60.1.2	33985
1js8A	394	1.48e+01		a.86.1.1	67219
				b.112.1.1	67220
1nd6A	354	1.52e+01		c.60.1.2	80407
1qrrA	394	1.67e+01	1qrrA	c.2.1.2	29824
1bouB	302	1.70e+01	1bouB	c.56.6.1	33859
1ftrA	296	1.81e+01	1ftrA	d.58.33.1	39485
				d.58.33.1	39486
1who	96	1.97e+01	1who	b.7.3.1	23215
1n6zA	105	2.08e+01		unknown_sccs	85369
1f80D	81	2.12e+01	1acp	a.28.1.1	59686
1nsj	205	2.13e+01	1nsj	c.1.2.4	28560
1ky3A	182	2.17e+01		c.37.1.8	73193
1iugA	352	2.45e+01		c.67.1.3	-8176
1cjaA	342	2.47e+01	1cjaA	d.144.1.3	41708
1opbA	135	2.51e+01	1hmt	b.60.1.2	27216
1j26A	112	2.52e+01			
1ryjA	70	2.53e+01		d.15.3.2	-9179
1kaeA	434	2.62e+01		c.82.1.2	72247
1o6zA	303	2.66e+01		c.2.1.5	81107
				d.162.1.1	81108
1vk5A	157	2.66e+01			
1evlA	401	2.80e+01	1qf6A	c.51.1.1	33202
				d.104.1.1	40751
1h1yA	228	2.82e+01		c.1.2.2	76506
1djxB	624	2.85e+01	1djxB	a.39.1.7	17343
				b.7.1.1	23160
				c.1.18.1	29588
1dyr	206	2.85e+01	1aoeA	c.71.1.1	34916
1fo1A	271	2.86e+01	1fo1A	c.10.2.3	30869
				d.58.7.2	39213
1ooyA	481	2.86e+01		unknown_sccs	-6867
				unknown_sccs	-6873
1bx4A	345	2.92e+01	1bx4A	c.72.1.1	34935
1ghhA	81	2.93e+01	1ghhA	d.57.1.1	38940
1uzbA	516	3.01e+01		c.82.1.1	-8552
1i2aA	219	3.06e+01		e.24.1.1	-12012
1gx3A	284	3.09e+01		d.3.1.5	70678
1qhxA	178	3.11e+01	1qhsA	c.37.1.3	31936
1ew4A	106	3.14e+01	1ew4A	d.82.2.1	40023
1jf8A	131	3.19e+01		c.44.1.1	66621
3kvt	115	3.23e+01	1t1dA	d.42.1.2	38642
1aba	87	3.24e+01	1aba	c.47.1.1	32760
1e4yA	214	3.29e+01	1zin	c.37.1.1	31901
				g.41.2.1	45181
1p9qC	256	3.46e+01			
1gppA	237	3.73e+01		b.86.1.2	76262
1ctqA	166	3.90e+01	1ctqA	c.37.1.8	31965