Mon Jul 19 10:26:15 PDT 2004 T0243 Due 14 Aug Mon Jul 19 10:35:56 PDT 2004 Kevin Karplus T0243 looks like an ORFan---at least the t04 script found no proteins other than itself. Mon Jul 19 16:51:17 PDT 2004 Kevin Karplus T0243 will need to be handled as an ab-initio prediction, which may be tough, since (as an ORFAN) we don't have very reliable secondary structure or burial predictions. The try1 prediction has a big hole in the center and does not bury anything. We may need to do many predictions on this one to get anything vaguely protein-like. Mon Jul 26 17:12:10 PDT 2004 Sol Katzman This is hypothetical protein F93 from Sulfolobus turreted icosahedral virus (STIV), which is a dsDNA virus of the archaea host Sulfolobus sulfataricus found in Yellowstone Park geysers. It is one of the few ORFs found on the negative strand of the (17K+ bp) circular DNA of this virus (among those >50 AAs and having a TATA element). Here is the abstract of a PNAS article about the virus, in which they analyzed the much longer protein B345. Proc Natl Acad Sci U S A. 2004 May 18;101(20):7716-20. Epub 2004 May 03. The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life Of the three domains of life (Eukarya, Bacteria, and Archaea), the least understood is Archaea and its associated viruses. Many Archaea are extremophiles, with species that are capable of growth at some of the highest temperatures and extremes of pH of all known organisms. Phylogenetic rRNA-encoding DNA analysis places many of the hyperthermophilic Archaea (species with an optimum growth 80?C) at the base of the universal tree of life, suggesting that thermophiles were among the first forms of life on earth. Very few viruses have been identified from Archaea as compared to Bacteria and Eukarya. We report here the structure of a hyperthermophilic virus isolated from an archaeal host found in hot springs in Yellowstone National Park. The sequence of the circular double-stranded DNA viral genome shows that it shares little similarity to other known genes in viruses or other ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ organisms. By comparing the tertiary and quaternary structures of the ^^^^^^^^^ coat protein of this virus with those of a bacterial and an animal virus, we find conformational relationships among all three, suggesting that some viruses may have a common ancestor that precedes the division into three domains of life >3 billion years ago. -------------------------------------------------------------------- Fri Jul 30 17:15:44 PDT 2004 Sol Katzman Caveat the lack of alignments, there are two predicted antiparallel strands. S1 Y12-Y20 S2 G68-T74 Strand S1 is (weakly) predicted to be buried, under CB-burial-14-7. Rasmol script pointed to by "strands" defines the above. Looking at the Robetta models, we can categorize each as to how well it H-bonds the two strands (anti-parallel or not), and whether S1 is exposed. Robetta Model S1-S2 sheet? S1 buried? ------------- ------------ ---------- 1 no 2 no 3 short no 4 no Hbonds yes 5 good antipar no 6 short half 7 parallel half 8 no Hbonds half 9 short no 10 no Hbonds half From robetta-model5 we can define the sheet (adding one pair K16-K69 which is close in the model but not exactly H-bonded.) SheetConstraint Y11 K16 T74 K69 Hbond I13 Add this constraint for try2, and increase the hbond_geom parameters for the new version of undertaker. Sun Aug 1 09:43:46 PDT 2004 Sol Katzman In try2, we did not get the desired sheet. Instead we got the same two strands bonded as we had in try1, namely: SheetConstraint I59 A65 T74 G68 hbond R61 At least try2 does not have a big hole in the middle like try1. For try3, continue attempt to get S1-S2 sheet by increasing the weight of 'constraints' (10 -> 40) In parallel, do a try4, using the SheetConstraint from try1/try2 and increase the wet and dry weights to get tighter packing. Mon Aug 2 09:56:03 PDT 2004 Sol Katzman Try3 looks like total garbage. Four widely separated helices and a couple of unconnected strands. Try4 looks fairly promising. It has made a 3-stranded sheet by adding a strand to the two that were previously specified. Although it is still rather foamy, the holes are fairly small compared to previous tries. A few of the hydrophobic residues should probably be more buried. For try5, increase phobic_fit and can pick up the constraints from try4: SheetConstraint R29 E33 L73 K69 hbond R31 SheetConstraint I59 A65 T74 G68 hbond R61 Tue Aug 3 11:00:40 PDT 2004 Sol Katzman Try5 is similar to try4, perhaps a little less porous. Lots of hydrophobic residues are exposed on one side -- can see this in rasmol with "color amino". I looked at a couple of other server predictions. FUGMOD_SERVER_TS1 picked up the same 3-stranded sheet as we got in try4. FUGMOD_SERVER_TS2 had the 2-stranded sheet as in our try2. FUGMOD_SERVER_TS3 used strands S1 and S2 (defined above) as the outer 2 of a 4-stranded sheet but is not compact at all. FUGMOD_SERVER_TS4 used strands S1 and S2 (defined above) in the middle of a 4-stranded sheet and has a reasonably compact structure with helices surrounding the sheet. An interesting model. FUGMOD_SERVER_TS5 is doing something strange in the region I20-K28 that seems unlikely (3 two-residue strands going back-and-forth) PROTINFO_AB_TS1 and TS5 were similar all-helix solutions, while the other PROTINFO_AB submissions were not very protein-like (strands crossing at right angles, etc.) The above are all in the decoys directory, BUT THE ONES THAT I DID NOT LIKE HAVE SUFFIX '.pdb.ng' so that they will not be automatcally included by scripts looking for '.pdb' Since we need to generate a few different types of model, I am going to use TryAllAlign, but also read in a few specific of the above models. For try6, I will use try3.costfcn which had the S1-S2 sheet constraint and read in: FUGMOD_SERVER_TS3 FUGMOD_SERVER_TS4 robetta-model3 robetta-model5 robetta-model6 robetta-model9 For try7, I will not use any sheet constraints, and just read in the two PROTINFO all-helix models TS1 and TS5. Also decrease the weights of hbond_geom_beta and beta_pair to 1. And weight of constraints (40 -> 20) Thu Aug 5 09:52:10 PDT 2004 Sol Katzman Try6 produced a pretty bad model with the final C-terminal helix sticking out into free space. Also, it only had the same 2-strand sheet as try1,try2 with no evidence of the 3-strand or 4-strand sheets of try5 and the FUGMOD models. Forget try6. Try7 (the all-helix try) is not very compact, with a big hole due to a long linker section E62-E75 between two helices. This model is essentially just a worse version of the topology of the PROTINFO models which it had as input. Not sure if it is worth pursuing this model just to get a tweaked version of the PROTINFO models. For try8, let's go back to try5. Read in all related models from try1, try2,try4,try5 and the FUGMOD_SERVER TS1,TS2 models. Turn off TryAllAlign. Thu Aug 5 14:10:45 PDT 2004 Sol Katzman The try8 costfcn likes try8,try4,try5. My biggest concern is that using 'color amino' it appears that one side of the model is very hydrophilic, while the other side is very hydrophobic. Not sure what to do about this. For try9, read in try8 models and the ones that we read in for try8. Increase the weight of phobic_fit (4 -> 8). Sat Aug 7 14:36:27 PDT 2004 Kevin Karplus Having one side of a protein be hydrophilic and the other hydrophobic is not inherently bad---it could just mean that the protein multimerizes. Mon Aug 9 10:04:45 PDT 2004 Sol Katzman Try9 looks pretty much like try8. A bit foamy, but maybe reasonable. Breaks and clashes are not too bad. For try10, polish try9 by decreasing wet weight and increasing dry weights, eliminate all predicted constraints, and add in the HelixConstraints from try9. Leave in heavily weighted SheetConstraints from try4 (same as try9). Mon Aug 9 15:26:09 PDT 2004 Sol Katzman Kevin created unconstrained costfcn and tweaked it slightly so that try10 scores best with it. Following try10 are try8,try9,try4,try5 all from the same family of solutions. For a further polishing try11 will use most of the weights from the unconstrained costfcn, which increase wet 6.5, dry5, dry6.5. But as in try10, soft_clashes and break are fairly low, while constraints are still used with weight 10. Going back to the all-helix models, we will create try8h by reading in the try7 models (and the PROTINFO_AB models that it was based on) and using the HelixConstraints from try7, eliminating all the predicted constraints. Also, increase phobic_fit and use the wet,dry weights from the unconstrained costfcn. Mon Aug 9 17:54:23 PDT 2004 Sol Katzman Had a collision between try8h and try11 making the rosetta repack models and had to redo them manually. These temp files should have unique names. The try11 model is good to go. About the same as try10, maybe slightly better on breaks and clashes. The try8h (all helix) model has a couple of bad breaks before V17 and T74, so for a try9h polish increase the break and soft_clash weights. Eliminate the TryAllAlign, reading in only try7,try8h and the PROTINFO_AB models. With the unconstrained costfcn, the best models are try11,try10,try8,try4,try9,try5 and then try8h shows up. Rosetta likes the repacked model try7 (all helix) best, then try11,try10,try9. Mon Aug 9 19:50:54 PDT 2004 Sol Katzman In try9h we fixed the T74 break but the V17 break remains. Also, the model could best be described as porous. It is very open. For another polishing run, try10h, increase break a little, but also increase phobic_fit and the dry weights. Tue Aug 10 14:40:38 PDT 2004 Sol Katzman The try10h result may be slightly better than try9h. But it is time to move on. Interestingly, with the unconstrained costfcn, try10h scores best, followed by try11,try10,try8,try9h. Rosetta likes the repack version try7 (all-helix) best, followed by try11,try10,try9 I think we should submit: try11-opt2.pdb.gz try10h-opt2.pdb.gz try7-opt2.repack-nonPC.pdb try11-opt2.repack-nonPC.pdb try1-opt2.pdb.gz Tue Aug 10 16:34:56 PDT 2004 Kevin Karplus I'm submitting the T0243.try11-opt2.repack-nonPC file to the VAST server, to see if it looks like any known proteins---particularly like any of the templates we used. job id: VS60652 password: T0243try11 Oops, that doesn't work because VAST doesn't like all the extra junk in the Rosetta files. I'll send try11-opt2 instead. job id: VS60653 or VS60654 password: T0243try11 I'm still getting errors from the VAST server, but they DON'T seem to be associated with the input---probably an internal error at ncbi. From karplus@soe.ucsc.edu Tue Aug 10 16:47:13 2004 Date: Tue, 10 Aug 2004 16:47:11 -0700 From: Kevin Karplus To: info@ncbi.nlm.nih.gov CC: karplus@soe.ucsc.edu Subject: VAST server broken? What does the error message VASTSRV Incorrect sdid or chaindom: chaindom = "999990100". mean from the VAST search service? I got it for job ids VS60652, VS60653, and VS60654. (Sorry for the repeated submission, but I had sent an incorrectly formatted PDB file the first time and thought that was the problem. The second time I was not absolutely certain I had sent the correct file, and so tried again.) I am now certain that the file I submitted is ok, and the problem is in the VAST server itself. When will it be fixed?? Kevin Karplus ======================================== Tue Aug 10 16:51:28 PDT 2004 Kevin Karplus Since the VAST server is currently broken, and probably won't be fixed for at least a day, I've submitted the try11-opt2 file to DALI http://www.ebi.ac.uk/dali/Interactive.html instead. We won't get back the easily edited alignments, but we will be able to see if there is a template we're secretly using. Tue Aug 10 17:25:27 PDT 2004 Kevin Karplus I've submitted the current predictions with N/A as the parent. From dali@ebi.ac.uk Tue Aug 10 18:44:43 2004 Date: Wed, 11 Aug 2004 02:44:16 +0100 From: Dali Server To: karplus@soe.ucsc.edu Subject: Dali-Server X-EBI-Information: This email is scanned using www.mailscanner.info. X-EBI: Found to be clean X-EBI-SpamCheck: not spam, SpamAssassin (score=0.261, required 5, UPPERCASE_25_50 0.26) X-Spam-Checker-Version: SpamAssassin 2.64 (2004-01-11) on coyote.cse.ucsc.edu X-Spam-Level: ** X-Spam-Status: No, hits=2.2 required=3.0 tests=UPPERCASE_25_50 autolearn=no version=2.64 FSSP FAMILIES OF STRUCTURALLY SIMILAR PROTEINS, VERSION 1.0 (Apr 1 1995) CREATED Wed Aug 11 02:44:12 BST 2004 for dali on s030-007.ebi.ac.uk METHOD Dali ver. 2.0: Holm, L., Sander, C. (1993) J.Mol.Biol. 233,123-138 DATABASE 4827 protein chains PDBID 6619-A HEADER COMPND SOURCE AUTHOR SEQLENGTH 93 NALIGN 106 WARNING pairs with Z<2.0 are structurally dissimilar ## SUMMARY: PDB/chain identifiers and structural alignment statistics NR. STRID1 STRID2 Z RMSD LALI LSEQ2 %IDE REVERS PERMUT NFRAG TOPO PROTEIN 1: 6619-A 1jgs-A 11.0 2.2 82 138 13 0 0 3 S multiple antibiotic resistance protein marr 2: 6619-A 1s3j-A 9.5 2.5 80 136 15 0 0 6 S yuso protein 3: 6619-A 1smt-A 9.2 2.8 84 98 8 0 0 4 S transcriptional repressor smtb biological_unit 4: 6619-A 1tbx-A 9.1 2.4 80 93 19 0 0 3 S hypothetical 11.0 kda protein (orf f-93) 5: 6619-A 1p4x-A 8.8 2.6 81 250 12 0 0 3 S staphylococcal accessory regulator a homologue 6: 6619-A 1lj9-A 8.8 2.6 83 144 12 0 0 3 S transcriptional regulator slya 7: 6619-A 1r7j-A 8.5 1.9 73 90 21 0 0 3 S conserved hypothetical protein sso10a 8: 6619-A 1fnn-A 7.7 3.2 83 379 5 0 0 5 S cell division control protein 6 (cdc6p) 9: 6619-A 1fy7-A 7.5 2.1 72 273 10 0 0 4 S esa1 histone acetyltransferase fragment (esa1 hat, esa 10: 6619-A 1fpx-A 7.5 3.5 81 345 7 0 0 7 S isoflavone-o-methytransferase (iomt) 11: 6619-A 1qbj-A 7.3 1.9 59 65 10 0 0 3 S double-stranded RNA specific adenosine deaminase (adar1 12: 6619-A 1hqc-A 7.3 2.7 74 314 14 0 0 7 S ruvb 13: 6619-A 1bi0 7.1 2.6 76 214 7 0 0 4 S diphtheria toxin repressor (dtxr) biological_unit 14: 6619-A 1on1-A 6.9 2.7 75 130 16 0 0 3 S transcriptional regulator mntr (manganese transport reg 15: 6619-A 1qzz-A 6.8 3.5 81 340 16 0 0 8 S aclacinomycin-10-hydroxylase (rdmb) 16: 6619-A 1bja-A 6.8 3.0 79 95 11 0 0 5 S transcription regulatory protein mota fragment 17: 6619-A 1lva-A 6.7 2.8 66 257 12 0 0 5 S selenocysteine-specific elongation factor fragment (sel 18: 6619-A 1ldd-A 6.7 1.4 56 74 11 0 0 3 S anaphase promoting complex fragment (apc2whb) 19: 6619-A 1okr-A 6.6 2.9 73 120 12 0 0 5 S methicillin resistance regulatory protein meci (meci) 20: 6619-A 1mzb-A 6.4 3.0 68 133 10 0 0 5 S ferric uptake regulation protein (ferric uptake regulat 21: 6619-A 1jmr-A 6.3 2.6 63 246 14 0 0 3 S 22: 6619-A 1ecl 6.3 2.9 77 552 14 0 0 5 S escherichia coli topoisomerase i (escherichia coli omeg 23: 6619-A 1ldj-A 6.2 2.5 64 725 11 0 0 3 S cullin homolog 1 fragment (cul-1) ring-box protein 1 fr 24: 6619-A 1iz1-A 6.2 2.7 73 292 10 0 0 4 S lysr-type regulatory protein (cbnr) 25: 6619-A 1ft9-A 6.2 2.1 66 210 8 0 0 5 S carbon monoxide oxidation system transcription regulat 26: 6619-A 1dpu-A 6.2 2.1 62 69 6 0 0 5 S replication protein a (rpa32) c-terminal domain fragmen 27: 6619-A 2fok-A 6.1 2.7 85 558 9 0 0 5 S foki restriction endonuclease fragment (r.Foki) biologi 28: 6619-A 1ucr-A 6.1 2.0 59 74 8 0 0 3 S protein dsvd (dissimilatory sulfite reductase d, dsrd) 29: 6619-A 1gku-B 6.1 2.7 76 1011 11 0 0 7 S reverse gyrase (top-rg) Mutant 30: 6619-A 1oyi-A 5.9 2.4 60 62 7 0 0 3 S double-stranded RNA-binding protein fragment 31: 6619-A 1sey-A 5.8 4.3 79 373 8 0 0 7 S 32: 6619-A 1ku9-A 5.6 3.2 69 146 10 0 0 7 S hypothetical protein mj223 (hypothetical protein mj1563 33: 6619-A 1hst-A 5.6 2.6 60 74 12 0 0 4 S Histone h5 (globular domain) 34: 6619-A 1p41-A 5.5 2.7 61 270 10 0 0 4 S 35: 6619-A 1b9m-A 5.5 2.9 74 258 11 0 0 5 S mode 36: 6619-A 1bm9-A 5.4 2.9 77 120 10 0 0 5 S replication terminator protein (rtp, ter) biological_un 37: 6619-A 1bia 5.4 2.9 66 292 15 0 0 5 S Bira bifunctional protein (acts as biotin operon repres 38: 6619-A 1cf7-B 5.2 1.8 57 82 12 0 0 3 S transcription factor e2f-4 fragment transcription facto 39: 6619-A 1iuy-A 5.1 2.0 59 91 14 0 0 3 S cullin-3 homologue 40: 6619-A 1fpq-A 5.1 3.4 72 333 11 0 0 7 S isoliquiritigenin 2'-o-methyltransferase (chalcone o-m 41: 6619-A 1d6m-A 5.1 2.7 74 603 9 0 0 6 S DNA topoisomerase iii 42: 6619-A 2cgp-A 5.0 2.7 58 200 12 0 0 3 S catabolite gene activator protein DNA (5'-d(GpTpCpApCpA 43: 6619-A 1lea 5.0 2.7 62 72 5 0 0 4 S Lexa repressor DNA binding domain (NMR, minimized avera 44: 6619-A 1kgs-A 4.9 3.1 63 219 13 0 0 5 S DNA binding response regulator d (drrd) 45: 6619-A 1e2x-A 4.9 3.2 67 222 13 0 0 5 S fatty acid metabolism regulator protein fragment 46: 6619-A 2bby 4.6 3.2 58 69 19 0 0 6 S rap30 fragment 47: 6619-A 1i1g-A 4.3 2.9 51 140 20 0 0 2 S transcriptional regulator lrpa 48: 6619-A 1hkq-A 4.3 4.1 84 125 13 0 0 7 S replication protein (repa) fragment 49: 6619-A 1ufm-A 4.2 2.5 59 84 5 0 0 3 S cop9 complex subunit 4 fragment 50: 6619-A 1omi-A 4.2 3.8 69 224 4 0 0 7 S listeriolysin regulatory protein 51: 6619-A 1d8j-A 4.2 3.4 59 81 7 0 0 7 S general transcription factor tfiie-beta fragment 52: 6619-A 1b4a-A 4.2 3.1 55 146 5 0 0 5 S arginine repressor biological_unit 53: 6619-A 1fse-A 4.0 3.0 61 67 13 0 0 6 S gere 54: 6619-A 1opc 3.8 3.4 62 99 6 0 0 6 S ompr fragment (omprc) 55: 6619-A 1jhg-A 3.7 3.4 56 101 16 0 0 3 S trp operon repressor Mutant biological_unit trp biologi 56: 6619-A 1pp7-U 3.5 3.2 67 114 6 0 0 7 S 39 kda initiator binding protein fragment ferredoxin in 57: 6619-A 1oyw-A 3.5 3.3 72 501 18 0 0 6 S atp-dependent DNA helicase fragment (recq helicase) 58: 6619-A 1cez-A 3.5 3.5 78 862 10 0 0 7 S bacteriophage t7 RNA polymerase biological_unit DNA (5' 59: 6619-A 1p2f-A 3.4 3.6 61 212 10 0 0 6 S response regulator (response regulator drrb) 60: 6619-A 1ab4 3.4 2.8 75 477 9 0 0 7 S gyrase a fragment 61: 6619-A 2hfh 3.3 2.7 62 93 6 0 0 5 S genesis fragment (hfh-2) biological_unit 62: 6619-A 1p4w-A 3.3 3.4 64 87 3 0 0 6 S rcsb fragment 63: 6619-A 1d3y-A 3.3 2.5 50 289 10 0 0 5 S DNA topoisomerase vi a subunit fragment Mutant 64: 6619-A 1uuk-C 3.1 3.8 71 212 13 0 0 7 S 65: 6619-A 1r72-A 3.0 3.6 62 205 6 0 0 6 S at-rich DNA-binding protein p25 66: 6619-A 1ail 3.0 2.8 52 70 10 0 0 5 S nonstructural protein ns1 fragment 67: 6619-A 1sei-A 2.9 2.6 51 130 10 0 0 5 S ribosomal protein s8 68: 6619-A 1rep-C 2.9 4.1 72 214 1 0 0 6 S DNA (5'- d(CpCpTpGpTpGpApCpApApApTpTpGpCpCpCpTpCp ApGpT 69: 6619-A 1a8i 2.9 4.6 66 813 9 0 0 8 S glycogen phosphorylase b biological_unit 70: 6619-A 1uhw-A 2.8 3.1 62 109 5 0 0 6 S pleckstrin fragment 71: 6619-A 1gln 2.8 3.6 63 468 14 0 0 6 S glutamyl-trna synthetase 72: 6619-A 1awc-A 2.8 3.0 55 110 7 0 0 5 S ga binding protein alpha fragment (gabpalpha) ga bindin 73: 6619-A 1o7f-A 2.7 3.5 67 421 7 0 0 7 S camp-dependent rap1 guanine-nucleotide exchange factor 74: 6619-A 1akh-A 2.7 2.7 42 49 5 0 0 2 S mating-type protein a-1 mating-type protein alpha-2 (ma 75: 6619-A 1vde-A 2.6 3.7 69 429 10 0 0 8 S pi-scei 76: 6619-A 1gnd 2.6 2.9 59 430 10 0 0 7 S guanine nucleotide dissociation inhibitor 77: 6619-A 1utg 2.5 3.0 53 70 8 0 0 4 S Uteroglobin (oxidized) 78: 6619-A 1k87-A 2.5 3.5 62 514 8 0 0 5 S proline dehydrogenase fragment (puta) bifunctional puta 79: 6619-A 1irx-A 2.5 3.4 60 507 7 0 0 6 S lysyl-trna synthetase 80: 6619-A 1f1z-A 2.5 3.7 65 260 12 0 0 6 S tnsa endonuclease (transposase) 81: 6619-A 2ezh 2.4 3.3 48 65 2 0 0 3 S transposase fragment 82: 6619-A 1v0d-A 2.4 2.5 45 244 4 0 0 3 S DNA fragmentation factor 40 kda subunit (dff-40, caspas 83: 6619-A 1tc3-C 2.4 3.0 42 51 7 0 0 2 S DNA tc3 transposase fragment Mutant 84: 6619-A 1dq3-A 2.4 3.7 65 454 8 0 0 8 S endonuclease 85: 6619-A 1b24-A 2.4 3.7 67 172 15 0 0 7 S i-dmoi biological_unit 86: 6619-A 1umq-A 2.3 3.8 49 60 6 0 0 4 S photosynthetic apparatus regulatory protein (rega, rega 87: 6619-A 1t0x-P 2.3 22.3 52 345 0 0 0 6 S 88: 6619-A 1ewq-A 2.3 3.7 66 759 12 0 0 7 S DNA mismatch repair protein muts (taq muts subunit a) 89: 6619-A 1s29-A 2.2 3.5 54 89 11 0 0 6 S la protein fragment 90: 6619-A 1qb2-A 2.2 3.3 53 106 11 0 0 4 S human signal recognition particle 54 kd protein fragmen 91: 6619-A 1m12-A 2.2 2.7 51 84 6 0 0 6 S saposin c 92: 6619-A 1ku2-A 2.2 2.9 53 240 2 0 0 6 S sigma factor siga fragment 93: 6619-A 1jqj-C 2.2 4.0 63 328 5 0 0 6 S DNA polymerase iii, beta chain Mutant DNA polymerase i 94: 6619-A 1irz-A 2.2 2.2 45 64 0 0 0 4 S arr10-b fragment (receiver-like protein 4, arp4) 95: 6619-A 1h0x-A 2.2 2.8 49 89 4 0 0 5 S DNA binding protein sso10b (alba) 96: 6619-A 1bp7-A 2.2 3.1 58 152 16 0 0 6 S i-crei (DNA endonuclease i-crei) biological_unit DNA (h 97: 6619-A 1bgf 2.2 3.6 60 124 7 0 0 6 S stat-4 fragment 98: 6619-A 1sf9-A 2.1 2.9 45 118 11 0 0 3 S yfhh hypothetical protein 99: 6619-A 1d9c-A 2.1 3.4 55 121 11 0 0 6 S interferon-gamma 100: 6619-A 1c52 2.1 2.8 56 131 2 0 0 8 S cytochrome-c552 101: 6619-A 1abv 2.1 3.4 57 105 4 0 0 5 S delta subunit of the f1f0-atp synthase fragment 102: 6619-A 2irf-G 2.0 2.6 52 109 8 0 0 8 S interferon regulatory factor 2 fragment (irf-2) DNA (5 103: 6619-A 2btv-A 2.0 2.9 52 845 4 0 0 7 S vp3 core protein fragment (t2a, t2b) vp7 core protein f 104: 6619-A 1iba 2.0 2.9 55 78 11 0 0 7 S glucose permease fragment 105: 6619-A 1fsh-A 2.0 2.7 49 94 8 0 0 5 S dishevelled-1 fragment 106: 6619-A 1ewa-A 2.0 11.1 61 137 2 0 0 6 S dehaloperoxidase ## ALIGNMENTS 1 - 30 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC OCC . . . . : . . . . : . . . . : . . . . : . . . . : . . . . : 1 1 A M 0 0 0 4 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 2 A K + 0 0 0 8 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 3 A I S > S- 0 0 0 26 . . Sh . . . . . . Yt . . . . Nt . . . . . . . . . . . Kh . Nt . 4 4 A R H > S+ 0 0 0 29 . . Lh . . . . . . At . Rh . . Lt . . . . . . A . . . . Eh . N . 5 5 A K H > S+ 0 0 0 28 . . Ah . . . . . . Fh . Rh . . Gt . F . . . . Rt . . . . Ih . Rs . 6 6 A Y H > S+ 0 0 0 29 . . Eh . . . . . . Ih . Ss . . N . T . . . . Gt . . . . Lh . Ns . 7 7 A M H X S+ 0 0 0 33 Pt . Fh . . Ft . S . Dh . R . T . St P . K Nh . L . . . . Ih . L . 8 8 A R H X S+ 0 0 0 41 Lt E Fh . . Kg . Eh . Sh . . . T L Nt S . T Sh . . Y . . A Eh . . . 9 9 A I H X S+ 0 0 0 40 Dt Kt Ah . . Eg . Eh . Xh . Gt . Ph Vh Dt . . Y Eh . . Te . . N Ah . . . 10 10 A N H < S+ 0 0 0 39 Is Qt Vh . . Lg . Vh . Sh . L . Sh Th Vs . . E Lh . . Le . . G Ih . . . 11 11 A Y H < S+ 0 0 0 36 . Gs . . . . . Lh . . . D . . Ph Ls F . . Rh . . Qe . . Ls Sh . . . 12 12 A Y H < S+ 0 0 0 28 . . . Ps V . . Ih . . . Et . . . . S . . . M . . . . . . . . . 13 13 A I S < S- 0 0 0 35 . . . Fs Ds . . Gh . . . . L . . . Eh . . K Nt . . . . . . . . . 14 14 A I - 0 0 0 52 . V . Fb Ms . . Ls . . . L V . . . Th . I V Tt A A . . . St M A . 15 15 A L >> - 0 0 0 94 T T D Y T Tt Lh P Ah Vh Qh E D Eh . N Kh Qh S T Lh G S E Hh T Y E G R 16 16 A K H 3> S+ 0 0 0 99 Ah Ph Ph . Ih Rt Eh Lh Yh Eh Dh Kh Th Dh Rh Eh Kh Rh Sh Lh Kh Rt Th Fh Dh Vh Ph Eh Rt S 17 17 A V H 3> S+ 0 0 0 96 Ah Ah Nh Ph Kh Gt Ih Hh Wh Xt Qh Rh . Yh Vh Kh Lh Sh Ah Ph Kh Vt Fh Rh Ih Ah Ph Ah At Ns 18 18 A L H <> S+ 0 0 0 103 Qh Qh Rh Eh Eh Qh Ih Eh Sh Nt Eh Dh Th Ih Ah Th Lh Lh Eh Rh Ah Qh Qh Qh Kh Qh Ah Kh Qh Ah 19 19 A V H X S+ 0 0 0 102 Fh Lh Lh Ah Fh Yh Qh Kh Dh . Qh Rh Eh Eh Ah Ah Kh Ph Wh Vh Fh Sh Mh Lh Qh Nh Ih Qh Th Eh 20 20 A I H X S+ 0 0 0 102 Kh Fh Rh Ih Ih Lh Ah Lh Th . Rh Eh Mh Qh Rt Th Dh Fh Eh Kh Eh Vh Ah Kh Rh Qh Rh Kh Lh Ih 21 21 A N H X S+ 0 0 0 102 Vh Vh Lh Vh Lh Yh Ih Fh Lh Ih Ih Ih Yh Ih Lh Ih Lh Ih Vh Ih Ih Ah Ih Yh Ih Vh Ih Vh Vh Vh 22 22 A G H X S+ 0 0 0 101 Lh Lh Lh Lh Lh Lh Lh Lh Ih Ph Lh Lh Lh Yh Vh Lh Eh Eh Mh Lh Lh Vh Lh Fh Ah Lh Lh Vh Lh Ch 23 23 A S H X S+ 0 0 0 100 Ch Ah Sh Ah Th Vh Eh Lh Th Nh Kh Eh Rh Mh Dh Ih Dh Gh Nh Qh Dh Rh Lh Ih Gh Nh Th Dh Gh Eh 24 24 A R H X S+ 0 0 0 100 Sh Sh Lh Yh Yh Rh Ah Ah Lh Ih Fh Vh Th Lh Hh Th Kh Mh Ih Mh Fh Lh Qg Ah Fh Lh Lh Fh Wh Ah 25 25 A L H X S+ 0 0 0 99 Ih Lh Lh Lh Lh Vh Ch Ih Lh Ih Lh Lh Ih Ih Lh Ih Yh Lh Ih Lh Ih Vh Yg Vh Fh Ih Lh Lh Ih Ih 26 26 A E H < S+ 0 0 0 97 Rh Kh At Yt Fh Ch Kt Vh Vh Qh Eh Ih Yh Eh Lh Ah Rh Th Wh Dh Vh Vh Ng Ah Ih Kh Et Ns Ih Kh 27 27 A K H < S+ 0 0 0 96 Ch Kh Rt Dt Hs Eh . Rh Eh Nh Eh Fs Eh Eh At Kh Vh Nh Mh S Kh Eh Ts Eh Dh Ah Dt Ss Dh Th 28 28 A K H < S- 0 0 0 93 Ah Hh S N Q Ns . Sh Q Hh Lh G Lh Kh Gt Ks Sh Lh Kh A N Rh Es Ah Ht C G . Rh Ih 29 29 A R S < S+ 0 0 0 81 As Gs . Et Ns Pt St Lh Ks Ks K Gs Eh Gs . Dt Rt G Ks R Gs Eh Ds . A . Q . Fh Gs 30 30 A L E +A 72 0A 0 82 Cs Se E Gt Te Gt G Y Ee P A Gs . Ys . Ft P As Ys Hs D R Ae . Ve Gt H . P Gt 31 31 A R E -A 71 0A 0 95 Ib Le Lb I Le Ie Sb Ie Ie Ie Tb V P A D Ib P Me Ae Mb Vb F Ye G D Le Le Fe Fb Ae 32 32 A S E > -A 70 0A 0 99 T Ke C Ab Pe Ie P Te Te Se T G L R Ts T Sb Ke Se S S S Te Ns F Ne Te Ye T Te 33 33 A E H > S+ 0 0 0 96 Ph Vh Vh Th Fh Qh Kh Fh Ih Lh Ah Lh Rh Vh Lh Ah Fh Lh Ah Ah Vh Eh Vh Mh T Fh Kh Fh Qh Ah 34 34 A I H > S+ 0 0 0 96 Vh Sh Gh Yh Kh Eh Th Gh Dh Sh Hh Ah Ah Sh Ah Ah Kh Hh Nh Eh Sh Ah Qh Ah Eh Qh Fh Nh Sh Ah 35 35 A L H > S+ 0 0 0 93 Eh Eh Dh Dh Kh Kh Rh Dh Eh Nh Dh Th Rh Dh Gh Eh Eh Kh Nh Dh Eh Sh Qh Ah Eh Dh Dh Dh Eh Qh 36 36 A K H X S+ 0 0 0 91 Lh Ih Lh Lh Ih Ih Ih Ah Ih Lh Lh Lh Ih Ih Lh Vh Vh Ih Ih Vh Ih Lh Lh Ah Ih Lh Lh Fh Ih Lh 37 37 A R H <>S+ 0 0 0 90 Kh Ah Ah Yh Vh Ah Mh Eh Sh Vh Sh Ah Ah Ah Ah Rh Ah Hh Ih Yh Ah Vh Th Ah Ah Kh Gh Th Ih Th 38 38 A F H ><5S+ 0 0 0 94 Kh Eh Qh Kh Sh Eh Yh Eh Sh Sh Gh Th Eh Eh Dh Eh Gh Sh Eh Kh Eh Kh Dh Kh Nh Nh Kt Dh Qh Rh 39 39 A D H 3<5S+ 0 0 0 93 Vh R Ah Kh Dh Lh Gh Sh Mh Ih Kh Ah Rh Ah Rh Vt Sh Fh Eh Ah Kh Eh Sh Rh Lh Qh Nt Lh Mh Qh 40 40 A I T 3<5S- 0 0 0 90 Lh . Ih Vh Ls Ih Ah Yh Th Lh Lh Lt Lh Lh Th H Ft Lh Ih Lh Ft Lh Tt Lt Ih Ls Ls F Mh Ls 41 41 A D T < 5 + 0 0 0 89 St E Gt Nh Cs Kt Nt Kh S Qt Gt St Et At Dt Pt Nt Kh Qh Mh Nt Eh Q Ht G Kt Gs Pt I Ns 42 42 A I < - 0 0 0 67 V V Vs . Ys V L R Mb V T Es Q V T Ls L . W V M G I Vs Ss Ms . Ms G Ms 43 43 A S > - 0 0 0 91 D K S S K D S V T Kg P D S H H G D T S G S R K S S S Sh K R E 44 44 A D H > S+ 0 0 0 94 Lh Ph Eh Th Qg Rh Yh Hh Th Ih Kh Ph Gh Ph Ph Nh Ph Lh Ph Lh Vh Pt Mh Qs Rh Vh Dh Qh Pt Kh 45 45 A G H 4 S+ 0 0 0 98 Gh Sh Sh Ah Sg Th Ah Sh Th Gh Kh Gh Ph Sh Qh Ah Sh Qh Kh Ah Sh St Dh Ph Qh Sh Kh Rh Tt Rh 46 46 A V H > S+ 0 0 0 100 Ah Ah Ah Th Dg Th Lh Qh Dh Nh Eh Th Th Sh Ah Vh Eh Qh Th Th Nh Tt Ih Ph Th Sh Yh Eh Yh Eh 47 47 A L H X S+ 0 0 0 102 Lh Vh Vh Fh Lt Ah Th Lh Ih Vh Ih Lh Vh Vh Lh Vh Lh Lh Ih Vh Ah Yh Lh Ih Th Ih Ah Vh Ah Vh 48 48 A Y H X S+ 0 0 0 102 Th Th Sh Yh Vh Ah Gh Wh Lh Rh Nh Eh Sh Th Sh Nh Eh Eh Rh Yh Yh Ah Ah Th Sh Kh Rh Kh Th Nh 49 49 A P H > S+ 0 0 0 99 Rh L Hh Dh Qh Rh Rh Sh Hh Rh Rh Eh Qh Kh Rh Sh Eh Gh Th Rh Kh Sh Qh Rh Th Qh Mh Kh . Kh 50 50 A L H X S+ 0 0 0 102 Mh . Qh Ah Hh Ah Yh Yh Th Lh Vh Ht Th Mh Lh Nh Lh Yh Lh Vh Yh Ih Vh Qh Ah Ah Ih Ih . Ah 51 51 A I H X S+ 0 0 0 103 Lh A Lh Kh Ih Ih Ih Lh Ah Xh Lh Eh Vh Vh Vh Ih Lh Lh Ih Lh Mh Ih Lh Mh Lh Vh Gh Lh . Lh 52 52 A D H X S+ 0 0 0 104 Dh Dh Rh Kh Kh Kh Kh Nh Kh Rh Yh Ph Ah Qh Rh Gh Hh Nh Th Th Vh Sh Qh Qh Nh Dh Gh Th Dh Yh 53 53 A S H X S+ 0 0 0 104 Rh Rh Sh Fh Vh Rh Mh Dh Th Yh Sh Yh Rh Kh Hh Vh Yh Th Rh Qh Vh Th Ih Ah Sh Fh Wh Ah Rh Dh 54 54 A L H <>S+ 0 0 0 104 Lh Lh Lh Lh Lh Lh Lh Lh Lh Lh Lh Lh Mh Lh Lh Lh Lh Lh Lh Fh Lh Ih Lh Lh Lh Lh Lh Lh Lh Lh 55 55 A I H ><5S+ 0 0 0 99 Vh Eh Rh Ih Vh Eh Mh Rh Nt Ah Ah Ih Eh Dh Th Ih Vh Ah Yh Eh Eh Qh Lh Eh Ih Sh Dh Vh Fh Qh 56 56 A D H 3<5S+ 0 0 0 92 Ch Qh Nh Qh Kh Eh Dh Eh . Hh Kh Rh Rh Kh Vh Kt Rh Dh Kh Ah Eh Dh Kh Ah Kh Nh Kh Nh Mh Rh 57 57 A D T 3<5S- 0 0 0 84 Kt Kt Lt Et Ht Qt Lt Kt . Nt Kt Qt Dt Dt Vt Kt Et Et Kh Ah Kt Rt St Vs Et Et Lt Dt Rt Sh 58 58 A K T < 5S+ 0 0 0 87 Gt Nt Rt Gt St Gt Et Gt . Gt Gt Gt Gt Et Gt Gt Gt Gt Gt Gt Gt Gt Kt V Gt Gt Gt Et Nt At 59 59 A I S - 0 0 0 56 N N Q Ee S D . N Ye Ks Gs Rt Dt . K . . Nt De Fs Dt . . Rt Rt Ds Ke Se . Ds 66 66 A P T 3 S+ 0 0 0 36 Pt Ts Gs Rt Ks Kt . . Kt Es Ts . . . . . . . Nt Ds . . . . . . Fe Gt . Is 67 67 A D T 3 S- 0 0 0 29 . . Rs Gt . Kt . . Gt . . . . . . . . . Kt . . . . . . . Ie St . Ps 68 68 A G S < S- 0 0 0 46 G Vs H Ee Ns I . T Qe Es Ps . . . G . Ds . Ie Hs . . Dt . . . Ss Te . . 69 69 A K S S- 0 0 0 70 Ve Ie Ve Ke Te Ke Kt Te He Ee P . Rs . R Dt Es Gt Fe A Ks Rt T . Gt Dt Hs Te Gt P 70 70 A V E -AB 32 63A 0 77 Le De Ye Re Ye Re Qe Le Ie Se Le Ge S G P Ge Fb Se Qe Ve R Re Le Ge H He Ae Me Re Re 71 71 A L E -AB 31 62A 0 76 Ve Le Ye Le Ie Ie Ye Ie Ie Ye We Re Le L L Le Ye Ye Ye Fe Ye Fe Ie Ie Ye Fe Fe Ye Me We 72 72 A F E -AB 30 61A 0 77 Ke Se Qe Ye Se Ye Me Se Fe Ae Ke Ve Qe V Re Ie We Ee Ye Ee Ve Ye Ke Ee Te Ke Ke Ge Ie Fe 73 73 A L E - B 0 60A 0 79 Le Le Le Le I Ae Le I L L Ie Pe Me Lb Pe Ie He Ie Se Le Pe Ae Le Le I Se Ie Le Pe Ms 74 74 A T > - 0 0 0 85 T T Qs T S T T G N T A T T T T T Rh V . As G E Y T Ps Ts T Kt T T 75 75 A E H > S+ 0 0 0 82 Th Dh D Eh Eh Eh Kh Ts Eh Vh . Eh Ph Sh Rt Gh Qh . . Ds Yt Kh Ls Ah Ns Ds Gh Gt Kh T 76 76 A K H > S+ 0 0 0 72 Gh Eh . Kh Eh Kh Kh Es Dh Ah . Lh Th Kh Lt Eh . . . Ss Kh Mh Gs Ah . A Eh . Lh . 77 77 A G H > S+ 0 0 0 56 Gh Gh . Gh Qh Gh Gh . Ih Sh . Ah Gh Gh Gg Ah . . Ls . Lh Gh . Gh . . Gh . Gh . 78 78 A M H X S+ 0 0 0 60 Ah Dh Hh Kh Rh Kh Eh . Lh Eh . Yh Rh Kh Mg Qh . . Vs . . Eh . Hh Lh . Lh . Ih . 79 79 A K H X S+ 0 0 0 64 Ah Ih Hh Lh Eh Nh Eh Th Dh Lt . Rh Th Kh . Dh . . E . . Ih . Ah Vh . Kh . Dh . 80 80 A E H X S+ 0 0 0 61 Ih Kh Ih Fh Kh Vh Lh Lh Rh Lt . Hh Lh Ih Lg Ih . . Eh . . Vh . Fh Rh . Vh . Vh . 81 81 A F H X S+ 0 0 0 59 Ch Fh Vh Ah Ih Yh Lh Eh Yh Vs . Lt Ah Gh Lg Ih . . . . . Th . Lh Lh . Lh . Fh . 82 82 A E H X S+ 0 0 0 59 Eh Eh Ah Ih Ah Ph Eh Ah Nh C . Gt Th Kh As Sh . . Sh . . Dh . Eh Kh . Rh . Rh . 83 83 A E H X S+ 0 0 0 58 Qh Eh Lh Sh Eh Ih Dh Vh Rh L . Y Ah Rh Dt Nh . . Dh . . Rh . Dh Ah . Rh . Fh . 84 84 A L H X S+ 0 0 0 52 Ch Vh Yh Lh Rh Ih Ih Ih Lh Ah . . Vh Lh Qh Ah . . Ih . . Lh . Ah At . Ah . Lh . 85 85 A H H X S+ 0 0 0 52 Hh Lh Qh Kh Vh Vh Rh Th Kh Ph . . Mh Vh Rh Ah . . Kh . . Eh . Rh A . Kh . Vh . 86 86 A E H X S+ 0 0 0 54 Qh Ah Nh Th Th Rh Kh Kh Ah Xh . . Rh Yh Ah Th . . Yh . . Eh . Rh . . Gt . Rh . 87 87 A F H X S+ 0 0 0 46 Lh Gh Ah Ah Lh Eh Fh Lh Kt Vh . . Kh Rh Wh Lh . . . . . Nh . Ih . . . . Rs . 88 88 A F H X S+ 0 0 0 41 Vh . Lh Ih Fh Nh Nh Ih . Eh . . Hh Hh Lh . . . . . . F . Lh . . . . Y . 89 89 A K H X S+ 0 0 0 46 Gh Rh Dh Eh Dh Qh Eh Kh K Ch . . Rh Eh D Yh . . . . . Rh . Eh . . . . A . 90 90 A K H < S+ 0 0 0 48 Qh Kh Hh Th Qh Hh Mh Eh R Vh . . Lh Lh Lt Ah . . . . . Eh . Lh . . Ds . Kg . 91 91 A I H < S+ 0 0 0 45 Dh Ah Lh Yh Ih Sh Rh Eh R . . . Ah Lh Nt Qh . . . . . . . Ah . . H . Fg . 92 92 A V H < 0 0 0 42 Lh I Qh Kh Ih Nh Kh Lt T . . . Eh Eh Gs Eh . . . . . . . Gh . . Ib . . . 93 93 A C < 0 0 0 39 Hh A Eh Qh Kh Qh Nh R . . . . Rh Qh Ah Nt . . . . . . . Rh . . L . . . ## ALIGNMENTS 31 - 60 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC OCC . . . . : . . . . : . . . . : . . . . : . . . . : . . . . : 1 1 A M 0 0 0 4 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 2 A K + 0 0 0 8 K . . . . . . . . . . . . . . . . . . . . . . . . . Q . . . 3 3 A I S > S- 0 0 0 26 T . . . Le . . . . Tt . . . . . . . . . . . . . Re . . Es . Le . 4 4 A R H > S+ 0 0 0 29 P . . . Qt . . . . Nt . . . . . . . . . . . . . Et . . P . Kt . 5 5 A K H > S+ 0 0 0 28 I . . . Qt . . . . Lt . . . . . . . . . . . . . Dt . . C . Gt . 6 6 A Y H > S+ 0 0 0 29 . . . . Ke . . . . Vh . . . . . . . Q . . . . . Ee . . . . Ke . 7 7 A M H X S+ 0 0 0 33 . . . . . . . . . Yh . . . . . . . S . . . . . . . . . Th . . 8 8 A R H X S+ 0 0 0 41 . . . . . . . . . . G . . Ke . R . Nh . . . . S . . . . Th . Vt 9 9 A I H X S+ 0 0 0 40 . Lh . . . . . . . . V . . Ee . At . Kh . . . . K . . . . Lh . Rt 10 10 A N H < S+ 0 0 0 39 . Ah . . . . . . . . L . . Ie . Rh . Lh . . . . P . . . . Lh . Dt 11 11 A Y H < S+ 0 0 0 36 . Kh . . . . . . . . S . . D . Ah . Ih . Fh S . L . . S . Ph . G 12 12 A Y H < S+ 0 0 0 28 . Ih . . . . . . . . . . . . . . . Eh . Nh Ss . . Me . Rs Ye . I . 13 13 A I S < S- 0 0 0 35 . Ht S . . . . . . . . Ah . . . . . Sh . Dh G . . P . Ds De . H . 14 14 A I - 0 0 0 52 . L H . . . . . . . V Fh L L . . I Sh . Fh Yt . L L . Pg G . L L 15 15 A L >> - 0 0 0 94 A N P Sh D Ah N Rh Ht . G Ls T T Gh Qh D . Ah Gh Fh G T T Lh Sg Sh Yh P K 16 16 A K H 3> S+ 0 0 0 99 Lt Kh T Gh Ph Fh Th Hh Eh Nh Rt D Ah Kh Fh Hh Es Kh Vh Sh Gh Qh Kh Sh Gh Rs Th Ih Kh Ph 17 17 A V H 3> S+ 0 0 0 96 Eh Sh Yh Rh Rh Lh Vh Fh Ih Ah Vt Vh Rh Kh Ah Vh Rh Rh Ih Ih Vh Rh Rh Gh Th Fh Dh Th Kh Vh 18 18 A L H <> S+ 0 0 0 103 Lh Vh Sh Lh Rh Kh Ph Sh Eh Ah Qh Th Qh Eh Eh Lh Dh Lh Eh Ch Lh Hh Eh Eh Rh Ph Ah Ih Eh Hh 19 19 A V H X S+ 0 0 0 102 Gh Gh Eh Vh Ih Lh Lh Mh Ah Ih Th Gh Qh Yh Eh Dh Kh Vh Hh Gh Ah Ih Rh Fh Vh Rh Qh Kh Fh Rh 20 20 A I H X S+ 0 0 0 102 Ds Ah Mh Dh Sh Yh Kh Kh Ah Nt Ph Rh Eh Qh Yh Mh Ih Lh Nh Qh Kh Kh Eh Ah Rh Kh Ih Th Eh Rh 21 21 A N H X S+ 0 0 0 102 Th Vh Ih Lh Lh Mh Lh Vh Ih Lh Vh Ih Vh Ih Ih Lh Ih Ch Lh Lh Ih Ih Vh Vh Ih Lh Ah Th Ih Vh 22 22 A G H X S+ 0 0 0 101 Lh Yh Ah Th Lh Ih Ih Ch Vh Fh Lh Ah Fh Lh Ih Fh Lh Ah Lh Lh Vh Rh Fh Lh Ih Hh Lh Lh Lh Lh 23 23 A S H X S+ 0 0 0 100 Yh Ah Ah Nh Kh Th Ah Eh Rh Eh Gh Qh Dh Eh Eh Sh Eh Ah Sh Ih Nh Eh Eh Kh Eh Mh Sh Ah Lh Yh 24 24 A R H X S+ 0 0 0 100 Ah Ih Ah Yh Hh Mh Lh Kh Ih Ih Lh Th Lh Yh Sh Ah Ih Sh Ah Lh Yh Ih Lh Ah Eh Lh Th Ch Fh Ah 25 25 A L H X S+ 0 0 0 99 Ah Lh Ih Lh Ih Th Lh Vh Mh Ih Vh Lh Ih Lh Ih Fh Lh Lt Sh Th Mh Ih Lh Lh Lh Lh Ih Lt Lh Mh 26 26 A E H < S+ 0 0 0 97 Ah Yh Rh Lh . Eh At Qh Kh Ah Vh Lh Rh Vh Nt Eh Eh I Kh Yh Kh Mh Vt Vh Lh Th Gh Tt Ah Nh 27 27 A K H < S+ 0 0 0 96 Ss Lh At Tt . Qt Nt Rh Sh Kt Rh Nh Dh Xh Rs Kh Kh D Ls Vh Th Sh Qt Sh Rh Yh Rh S Eh Vh 28 28 A K H < S- 0 0 0 93 Rs S E Hs . Et Gs Kh Rh A Rh Lh Hh Nt Fs H D . Y Yh Rh Ns Dt Hs G Lh Nt As Nt Lt 29 29 A R S < S+ 0 0 0 81 . . . E . . Es Gs K A Dh At Ih Kt P Qs At Ye Ns Ie Hh . . Pt . Fe Qt Ds At Gt 30 30 A L E +A 72 0A 0 82 L P G L . . F Te Ke F H . P V L Y Rt Le Ne Ke P I . P E Ke R N V N 31 31 A R E -A 71 0A 0 95 Se Le Se Ib Gs L Hb Te Me Xb F I P Ve P Yb T Te Ie Ie Lb E K Le Ms Me F T V Ke 32 32 A S E > -A 70 0A 0 99 Pe Te Se P Ss Yb S S Qe S Tb T T Te A N P Ie Te T T Ts T Se S K G Tb Tb Ke 33 33 A E H > S+ 0 0 0 96 Yh It Rh Lh Ih Gs Gh Yh Hh Ph Dh Rh Rh Kh Eh Lh Fh Re Fh . Lh Qh Th Rh Qh Kh . Vh Rh Sh 34 34 A I H > S+ 0 0 0 96 Eh St Qh Th Sh Lt Eh Nh Nh Sh Ah Qh Ah Eh Rh Kh Th Ah Eh . Dh Dh Kh Dh Rh Kh G Qh Eh Ah 35 35 A L H > S+ 0 0 0 93 Ih Dt Sh Fh Qh Kt Qh Eh Vh Eh Th Eh Eh Eh Eh Dh Eh Dh Eh . Eh Eh Eh Kh Eh Nh Yh Ah Kh Rh 36 36 A K H X S+ 0 0 0 91 Ah I Ih Fh Gh Lh Lh Vh Lh Ih Lh Ih Ih Lh Lh Lh Ih Th Lh . Ih Lh Ih Lh Lh Vh Vh Vh Lh Vh 37 37 A R H <>S+ 0 0 0 90 Sh . Qh Sh Ah Lh Gh Ah Vh Ah Lh Gh Ah Qh Sh Vh Ah Fh Gh Mg Lh Vh Ah Mh Kh Ah Vh Ah Lh Vh 38 38 A F H ><5S+ 0 0 0 94 Kh E Kh Eh Kh Eh Eh Dh Ah St Sh Qh Qh Eh Eh Dh Kh Ah Ah Qg Dh Dh Sh Nh Nh Lh Eh Sh Eh Gh 39 39 A D H 3<5S+ 0 0 0 93 Ls E Yh Rh Dh Vh Th Eh Eh Kt Ah Ih Rh Hh Lh . Kh Eh Lh Eg Eh Rh Eh Lh Eh Vh Vh Ah Th Dh 40 40 A I T 3<5S- 0 0 0 90 Ps Ls Ih Yt Ah Lh Lh Lh Vh Ls Mh Vh Lh L Ih Ih Lh Vh Lt L Th Lh Lh Ah Lh Mh Ih Ih Fh Vh 41 41 A D T < 5 + 0 0 0 89 . K Kh Et Gt Rh Gt Vh Th P Th Gt Gt W Gt T Gt Ft Et . Qt Rh Ft R G Gt Rh Gh W Ih 42 42 A I < - 0 0 0 67 . I . S I P Ms . P . Gs C F V V K Is . Is . H V Is . A I . Rh . . 43 43 A S > - 0 0 0 91 Eh S Ah A S N S Ih S Lh T S Ss Fh T Qs S Ah P . Qh T S . G K S Sh S G 44 44 A D H > S+ 0 0 0 94 Ah Kh Dh Kh Yh Hh Rh Rh Ph Ph Et Rh Ph Sh Rh . Eh Yh Ah . Kh Qh Eh . Ih Lh Hh Ih Pt Dh 45 45 A G H 4 S+ 0 0 0 98 Ph Gh Lh Sh Kh Th Ah Rh Vh Nh At Eh Nh Dh Th . Th Ah Ah S Qh Ah Kh Rs Ah Nh Eh Hh Rh Sh 46 46 A V H > S+ 0 0 0 100 Vh Nh Qh Sh Sh Eh Ah Rh Vh Rh Th Th Ah Vh Th P Ah Ah Kh Ah Wh Th Th S Th Th Hh Vh Vh Ah 47 47 A L H X S+ 0 0 0 102 Lh Vh Ih Ih Ah Vh Ih Vh Ih Lh Rh Vh Ah Lh Lh Vh Vh Lh Ah Vh Lh Vh Vh Ih Ih Lh Wh Gh Vh Vh 48 48 A Y H X S+ 0 0 0 102 Lh S Kh Sh Wh Yh Nh Yh Kh Dh Ah Gh Eh Rh Rh Vh Rh Dh Eh Sh Mh Sh Rh Dh Th Nh Vh Vh Dh Yh 49 49 A P H > S+ 0 0 0 99 Dh . Lh Eh Dh Rh Kh Dh Kh Rh Gh Rh Eh Sh Eh Yh Kh Dh Kh Rh Et Rh Nh Vh Rh Vh Sh Rh Th Dh 50 50 A L H X S+ 0 0 0 102 Rt S Sh Dh Ah Sh Hh Ah Rh Xh Ih Ih Hh Hh Vh Lh Rh Ah Ih Ih Ah Dh Hh Qh Gh Nh Vh Ch Vh Th 51 51 A I H X S+ 0 0 0 103 Mt Lh Ih Lh Ih Lh Ih Lh Ih Lh Ih Lh Lh Ih Lh Kh Vh Ah Ah Ih Lh Ih Ih Ih Sh Lh Ih Ih Ih Ih 52 52 A D H X S+ 0 0 0 104 Lt Kh Rh Th Nh Hh Qh Nh Eh Rh Eh Kh Kh Kh Qh Eh Kh Th Sh Sh Vh Kh Sh Sh Nh Rh Rh Eh Kh Vh 53 53 A S H X S+ 0 0 0 104 Rh Kh Rh Ih Eh Eh Th Vh Gh Lh Lh Mh Ah Nh Rh Ih Ah Kh Qh Kh Nh Eh Nh Rh Sh Dh Qh Mh Rh Rh 54 54 A L H <>S+ 0 0 0 104 Lh Lh Lh Ih Xh Lh Lh Lh Lh Lh Lh Lh Lh Lh Lh Lh Lh Lh Mh Lh N Mt Ah Lh Lh Lt Lh Lh Ih Mt 55 55 A I H ><5S+ 0 0 0 99 Lh Eh Lh Kh Nh Lh Rh Mh Ih Ah Fh Eh Ah Rh Ah Kh Eh Fh Ih Kh Pt Qt Mh Rh Kh At Ih Ih Rh At 56 56 A D H 3<5S+ 0 0 0 92 Ah Eh Ah Qh Qh Dh Dh Ah Eh Sh Kh Dh Rh Kh Rh Eh Eh Nt Th Qh . . Qh Rh Ah . Hh Eh Kh Q 57 57 A D T 3<5S- 0 0 0 84 Ss Lt At Th Hs Dt Gt Mt Rt Yt Rt Qt Kh . Dt . Kh R Et Et . . V Mh As . Lt Ts . Ys 58 58 A K T < 5S+ 0 0 0 87 Yt Gt Gt Fh I Gt V Nt Et St Gt Nt Gt K Gt . Gt R Gt Kt . . Ks Vh P . Gt G Rs M 59 59 A I S - 0 0 0 56 K I . Gs G Ve Gt . Es Re . . Gt Gt Gt . . Re It . . M . Gt . He Ag Qe Gt . 66 66 A P T 3 S+ 0 0 0 36 A E Gs At . Ke . . D Te . . A . . . . . . . . As . . . Gt . Ns . . 67 67 A D T 3 S- 0 0 0 29 . Rs A At . Ee . . . Ae . . . . . . . Gt . . . . . . . Gt . . . Rt 68 68 A G S < S- 0 0 0 46 R Ks S . . Ve . . Rs Ee . . Ss . . K . Ce Dt . . . . . . We Ht Se . Yt 69 69 A K S S- 0 0 0 70 Ve N G G . Ve Kt Ks Ks Re Rt Kt Rs It Ke N . Ve Gt Ss Gs Ye . Lt . Te St Ee Vt T 70 70 A V E -AB 32 63A 0 77 Ye Ye Se Ge G Le Ge E Ve Ve Ye Te G Ge Pe Te . Ee Ie Cs Ks Ke . Ge . Qe Ae Te Gb Ee 71 71 A L E -AB 31 62A 0 76 Re Ye Fe Ve Ae Ye Ye Ie Ye Ye Ie Ie Ie Ye Te We . Le Ve Fe Ye Ye . Ye . . Le Ie Y Ie 72 72 A F E -AB 30 61A 0 77 Ae Ee Re Ke Ve Qe Se Ke Te Ge He Ve Re Ve Ke E . Ge He Ye Ae Se . Ve . We Qe Ee F Re 73 73 A L E - B 0 60A 0 79 E Ae Le Ye Le Fe L Wb Ye Le Se Ve Le Ae Ve L . Fe Fe Ve Fe L . Fe . Ke Le Le T Le 74 74 A T > - 0 0 0 85 P V A Ie T D Ps I V S T Ye L R N K . S E Qs K Pt . V Vh R T A . A 75 75 A E H > S+ 0 0 0 82 Ih D K Pe Rh Yh Es G . Xt Dh G Q D N P . Pt T . P St Sh P Eh St Eg Ph . Kt 76 76 A K H > S+ 0 0 0 72 Ch Gh . K Yh Eh . L . Vt Ah . E E Fh Es E Tt . . Kt D Qh D Lh Gt Ag Eh . It 77 77 A G H > S+ 0 0 0 56 Rh . . . Gh Ah . . . Gg Gh . . . . . G It . N . . Ah . Rh Fe Ag Yh . Ah 78 78 A M H X S+ 0 0 0 60 Fh . . . Qh Ah . . . Kg Kh . . . . . Y It . Lh . . Vh . Qh Te Rh Ah . Hh 79 79 A K H X S+ 0 0 0 64 Fh Fh . . Rh Kh . . . Yg Ah . . . . . T Pt . Dh . . Vh . Wh Nt Ph Eh . Eh 80 80 A E H X S+ 0 0 0 61 Ls Sh . . Lh Lh . . . . Lh . . . . . . Ht . Yh . . Eh . Lh Se Vh . . Lh 81 81 A F H X S+ 0 0 0 59 Ks Sh . . Ih Yh . . . Lg Fh . . . . . . Lh . Lh . . Lh . Eh Ve Lh . . Ms 82 82 A E H X S+ 0 0 0 59 D Ih . . Qh Kh . . . Vs Hh . . . . . . Th . Kh . . Lh . Eh F Rh . . At 83 83 A E H X S+ 0 0 0 58 Gs . . . Lh Kh . . . Pt Sh . . . Eh . . Mh . Rh . . Gt . Vh . Gt . . . 84 84 A L H X S+ 0 0 0 52 St . . . Yh Qh Q . . Dt . . . . Th . . Lh . Yh . . Es . Lh . . . . . 85 85 A H H X S+ 0 0 0 52 Lt . . . Dh Lh L . . . . . . . Lh . . Hh . As . . L . Ls . . Lt . . 86 86 A E H X S+ 0 0 0 54 Ah . . . Lh Kh L . . . Ls . . . Ah . . Kh . Ph . . E . K . . At . . 87 87 A F H X S+ 0 0 0 46 Sh . . . Lh Vh N . . . P . . . Rh . . Eh . Kh . . . . . . . Gt . . 88 88 A F H X S+ 0 0 0 41 Qh . . . Ah Eh . . . . Eh . . . Lh . . Fh . Lh . . . . . . . I . . 89 89 A K H X S+ 0 0 0 46 Vh . . . Qh Lh . . . . Mh . . . D . . Th . Dh . . . . . . . S . Vs 90 90 A K H < S+ 0 0 0 48 Ih . . . Ih Dh Ah . . . . . . . Ht . . Sh . Eh . . . . . . . Lh . D 91 91 A I H < S+ 0 0 0 45 Vt . . . Qh Rh Kh . . . . . . . . . . Yt . Wh . . . . . . . Eh . Fe 92 92 A V H < 0 0 0 42 Ns . . . Qh Ch Qh . . . . . . . . . . Q . Fh . . . . . . . Qh . Ve 93 93 A C < 0 0 0 39 F . . . Kh Kh Ih . . . . . . . . . . L . Yh . . . . . . . Ah . De ## ALIGNMENTS 61 - 90 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC OCC . . . . : . . . . : . . . . : . . . . : . . . . : . . . . : 1 1 A M 0 0 0 4 . . . . . . . . . . . . P . . . . . I . . . . . . . . . . . 2 2 A K + 0 0 0 8 . . . . . . . . . . V . S . . . . . L . . . . . . . . . . . 3 3 A I S > S- 0 0 0 26 . . . . . D . . Wh . S . Es . L V . . Es . . Dt . . . . . Ph . Fh 4 4 A R H > S+ 0 0 0 29 . . . . . Sh . . Dh . Eh . Kh . T E . . Ks . . Ih . . . . Dh Lh . Sh 5 5 A K H > S+ 0 0 0 28 . . . . . Nh . . Kh . Kh . . . Is Ge . . . . . Th . . . P Qh Eh . Qh 6 6 A Y H > S+ 0 0 0 29 . . . . . Th . . Ah G . . . . Es Se . . . E . Rh . . . Ps As Ah . Ih 7 7 A M H X S+ 0 0 0 33 . G . . . Vh . A Wh S . . . . Gh . . . P V . Fh . . . E Rs Rh . Lh 8 8 A R H X S+ 0 0 0 41 . Y . D . Sh . Ab Eh Ss . . . . Ph . . Qh P S . Lh . . . Ns . Lh . Gh 9 9 A I H X S+ 0 0 0 40 . Gs . Ms . Sh . Y Vh Gs . . . . . . . Gh E Ah . Sh . . . Ps . Dh . . 10 10 A N H < S+ 0 0 0 39 . Ds . D . Fh . S Th Ss . . . . . . . Lh V Eh . Vh . . . . . Rh . . 11 11 A Y H < S+ 0 0 0 36 . . . T . Qh . . Vh St . . . . . . . Lh . . . Ft . . . . I Vh . Eh 12 12 A Y H < S+ 0 0 0 28 . Ks Q . . . . . Kh . . . . . . Th . . . . . Nt . . . Ms P Eh . Sh 13 13 A I S < S- 0 0 0 35 . Rs Ah . . . . . Th . . . . . . Eh . . E . . Es . . . S Vh Gh . Mh 14 14 A I - 0 0 0 52 . L Kh D . . . L Ce . . . . . . Ah . . V . D P S . . Ah Hh Fh . Ah 15 15 A L >> - 0 0 0 94 Ih S Ih Fh Ih . Ih S . . Lh I . Ph . Lh . Gh S . Eh . Dh Dh Sh Dh Vh E Qh Lh 16 16 A K H 3> S+ 0 0 0 99 Ah Ph Ah Kh Sh . Ah Rh . . Ph Q . Qh Ah Rh . Vh Eh . Dh As Th Yh Ah Vh Eh Gh Kh Kh 17 17 A V H 3> S+ 0 0 0 96 Lh Kh Qh Th Rh . Dh Dh . Lh Lh Lh . Ah Yh Rh . Ah Dh . Ah Gt Eh Wh Yh Rh Th Ah Lh Kh 18 18 A L H <> S+ 0 0 0 103 Ih Eh Th Wh Lh . Mh Qh . Yh Lh Wh Kh Rh Lh Fh . Lh Vh Lh Wh Vt Rh Lh Lh Wh Ih Lh Qh Lh 19 19 A V H X S+ 0 0 0 102 Th Sh Th Ih Ih Fh Lh Kh . Lh Kh Qh Ih Ah Lh Rh Ah Mh Rh Sh Qh Ih Ah Ah Lh Eh Nh Rh Kh Mh 20 20 A I H X S+ 0 0 0 102 Mh Eh Kh Gh Th Lh Th Rh . Sh Eh Fh Lh Fh Gh Kh Hh Ch Eh Ph Fh Qh Qh Gh Gh Hh Kh Eh Qh Th 21 21 A N H X S+ 0 0 0 102 Ah Vh Mh Vh Yh Wh Ah Mh . Mh Lh Lh Rh Lh Lh Fh Vh Lh Ah Lh Lh Ah Lh Fh Lh Ih Lh Gh Vh Ih 22 22 A G H X S+ 0 0 0 101 Ih Lh Lh Ih Lh Hh Ih Lh . Kh Yh Lh Ih Eh Wh Lh Ih Ah Mh Ah Ih Ah Dh Ih Ih Qh Sh Vh Eh Mh 23 23 A S H X S+ 0 0 0 100 Lh Rh Eh Yh Rh . Rh Yh . D Ph Eh Ah Eh Ih Vh Eh Eh Nh Hh Ah Rh Vh Ah Ih Rh Rh Rh Fh Dt 24 24 A R H X S+ 0 0 0 100 Qt Lh Fh Ah Ih . Nh Lh . Gs Rh Lh Ih Vh Gh Fh . Ah Eh Ih Dh Qh Mh Ge Gh Ih Th Rh Yh St 25 25 A L H X S+ 0 0 0 99 S Fh Ah Fh Lh . Ah Fh . I Lh Lh . Fh . Vh . Lh Vh Lh Yh Qh Kh Ce Ge Yh Ah Lh Ft Ms 26 26 A E H < S+ 0 0 0 97 . Ah Kh St Eh . Nh Vh . K Rh . Pg Rh . Ah . Lh Ah Qh Lt Lh Lh Fe Ge Eh Rh Lh Ss N 27 27 A K H < S+ 0 0 0 96 Ps Eh Qh Kt Eh . Rt Dh Ag E Ah . Hg Rh Dt Nh . Rt Eh Eh Rs Sh . De Le . Qh Yt Dh Dh 28 28 A K H < S- 0 0 0 93 Qs Gt Lh Yt Lh . H Qh Ls Le Q . Mg K Rs F . Is Wh Kt Pt Ds . . Ye Mh Lh Rt . Qh 29 29 A R S < S+ 0 0 0 81 Ks . Lh Ie . . Es Ce E He . Gs Is Qs As . . . Lh Gt Et E Lt Le . Ct Qt L G Eh 30 30 A L E +A 72 0A 0 82 K . F Qe . . Ke Ee Re Ce Lh Ee Ce . Te . . . . Dt K . Nt Re Ve Dt E Ih F Lh 31 31 A R E -A 71 0A 0 95 Lb F Se Le Te . Le Ie We L Eh Fe Ce . Fe . Sh . . Es P . V Ie Ie Rs P Lh V . 32 32 A S E > -A 70 0A 0 99 T L Te Se S . Ee He Pe T Ah Ke Ve Eh Se Sb Sh . . Nb A . S Ye Te N T Ph S Rh 33 33 A E H > S+ 0 0 0 96 Lh Vh Lh Fh Sh . Ve Vh Vh Gh Lh L Gh Kh Ve Mh Yh . . Ih Fh . Lh De Qe Vh Yh Eh Lh Ih 34 34 A I H > S+ 0 0 0 96 Sh Th Rh Qh Eh . Pe Ah Hh Sh Rh . Th Eh De Rh Eh P . Ih Rh . Hh Ys Ks Sh Eh . Eh Qh 35 35 A L H > S+ 0 0 0 93 Gh Eh Eh Eh Qh Qh . Kh Lh Gh Gh . Eh Eh . Dh Th St Eh Nh Kh . Eh R S Eh Eh . Th Rh 36 36 A K H X S+ 0 0 0 91 Ih Ih Ah Fh Lh Vh . Yh Lh Vh Fh Vh Lh Vh . Vh Sh Lt Vh Vh Ch . Mh . . Th Ih . Lh Vh 37 37 A R H <>S+ 0 0 0 90 Ch Ah Yh Ah Gh Vh . Ah Eh Ih Ah Ah Vh Ah . Yh Lh Ft Ah Ch Yh . Sh . . Ah Ah . Lt Ah 38 38 A F H ><5S+ 0 0 0 94 Eh Kh Yh Kh Eh Dh . Eh Th Dh Ah Qh Dh Kh . Rh Kh Vt Kh Kh Eh . Rh . . Rh Eh . Tt Rh 39 39 A D H 3<5S+ 0 0 0 93 Fh Kh Vh Ah Lh Qt . Ih Lh Wh Eh Kh Wh Kh . Kh Et Ns Rh Qh Rh . Kh . . Rh Ah . Fs Gh 40 40 A I T 3<5S- 0 0 0 90 Ih Lh Sg Cs Ah . . Ft . Lh Kh Wh Mh Ch . Ft Ft At Rh Vh Lh . Ih . . Lh Mh . . St 41 41 A D T < 5 + 0 0 0 89 Sh Nt Kg G Qt . . Gt . Vh Gt Gh Ih Gt . Dt E At Gt Dh Eh . St . . Nt G . Vt Gt 42 42 A I < - 0 0 0 67 . Rs . . Vs . . L . . V . . Is . L P . I . . . R . . Ms W . T V 43 43 A S > - 0 0 0 91 . S Ds L T Fh . T . Ns K N S T . G Mh N Sb E . . S . . H D . Ts S 44 44 A D H > S+ 0 0 0 94 . Ih Qh D Ah Lh S Sh L Rh Lt Yh Rh Ph D Qh Kh Eh Sh Lt . . Rh Ih Kh Rh Ah . D Th 45 45 A G H 4 S+ 0 0 0 98 Ag Kh Qh Ah Fh Dh Kh Ah Ph Qh Gh Eh Th Lh Th Dh Dh Ah Rh Gt P . Hh Eh Qh Rh Kh . Kh Rh 46 46 A V H > S+ 0 0 0 100 Wg Th Ah Kh Qh Rh Ih Eh Rh Eh Qh Kh Qh Qh Sh Vh Ah Sh Eh Kh S . Ch Th Ht Th Rh . Eh Dh 47 47 A L H X S+ 0 0 0 102 Qh Ih Sh Lh Vh Lh Kh Ah Hh Gh Vh Lh Ah Vh Lh Ih Gh Lh Wh Th Rh . Ih Fh Ih Lh Vh . Vh Vh 48 48 A Y H X S+ 0 0 0 102 Nh Sh Nh Rh Rh Rh Rh Sh Lh Lh Ah Sh Vh Rh Mh Dh Mh Sh Fh Lh Ah . Rh Eh Ah Qh Eh . Vh Qh 49 49 A P H > S+ 0 0 0 99 Sh Sh Nh Lh Kh Rh Eh Kh Qh Mh Qh Rh Gh Vh Eh Fh Qh Rh Sh Sh Th . Vh Ih Ph Rh Eh . Eh Eh 50 50 A L H X S+ 0 0 0 102 Ih Qh Vh Th Dh Dh Ih Dh Ih Ih Ph Ah Mh Wh Rh Th Mh Sh Th Eh Ah . Yh Ih Lh Ih Th Lh Ah Lh 51 51 A I H X S+ 0 0 0 103 Rh Kh Ih Ih Lh Qh Ah Ih Ih Sh Lh Lh Wh Fh Vh Gh Kh Lh Lh Ih Fh . Lh Nh Xh Lh Lh G Ih Lh 52 52 A D H X S+ 0 0 0 104 Hh Kh Eh Hh Sh Kh Eh Rh Yh Ah Rh Rh Qh Ih Th Hh Kh Nh Yh Rh Rh . Kh Dh Qh Ah Kh Et Rt Th 53 53 A S H X S+ 0 0 0 104 Nh Sh Dh Eh Yt Sh Ih Qh Eh Sh Ah Yg Vh Nh Eh Ah Vh Rh Rh Ah Rh . D Yh Fh Kt Ih Et Pt Qh 54 54 A L H <>S+ 0 0 0 104 Lh Ah Lh Sh Ft Lh Lh Ah Ih Lh Ah Yg Lh Kh Yh Lt Lh Ih Lh Lh Ih . Ps Lh Lh Rs Ah Vs S Yh 55 55 A I H ><5S+ 0 0 0 99 Sh Mh Eh Lh Gs Rh Kh Lh Nh Lh Lh Yg Lh Rh Ah As Dt It Fh Th Qh . Vt Eh Ih Ss . G . Th 56 56 A D H 3<5S+ 0 0 0 92 Lh Mh Ah Gh S Gh Rh Kh Qh Sh Th Dg Eh Mh Eh L St Gt Ih Ah Qh . St Kh Dh P Qs . . Kh 57 57 A D T 3<5S- 0 0 0 84 Nh V Ah Rh . Rh Et St Rh Eh Gs Gs Dt Rh Kh . Ls Kt . Nt Lh . Yt Th Eh . E . . Fh 58 58 A K T < 5S+ 0 0 0 87 Dt Ds Gt Lt . Gh Gt Ft Fh Gt . Ds Gt S Le . P St . Gt D . . Fh Lt . P . Es Ah 59 59 A I S - 0 0 0 56 . . . Lt Gs . . Se Gs . . Gt . . R . . . . S . . . Ke G . . Kh Dt . 66 66 A P T 3 S+ 0 0 0 36 Gs . . . . . . . As . . Ks . . Qt . . . . Fg . . . Ds Ds . . Eh . . 67 67 A D T 3 S- 0 0 0 29 Ks . . . . . . . Vs Ps . . Ks . Vs Dg . . . Rg . . . . Ts . . Eh . . 68 68 A G S < S- 0 0 0 46 G . . . . . . Rt . Ds . Rt Ys . Ae Qs . . . Ag . . . I R . . Lh . . 69 69 A K S S- 0 0 0 70 N . . Dt Vs . . Gt K A . Ft L . Ke Pb . . . N . . . Ye Ye . . . G . 70 70 A V E -AB 32 63A 0 77 Y . . Le G . Re Le Re F . Ve Fe . Te Cs . . . Kb . . . Ye Ee . . . L . 71 71 A L E -AB 31 62A 0 76 Wb . . Ie Ye . Ie Ye Ie Ye . Ye Ye . Ve Th . . . Dg . . . Ie Le . . . V . 72 72 A F E -AB 30 61A 0 77 Tb . . Ee Te . Fe Se Ne Ye . Ke Re . Ne Ih . . . L . . . De Re . . . Re . 73 73 A L E - B 0 60A 0 79 L . . Le Vh . Le Ve Mh F . Fe Fe . Le Nh . . . Ce . Q . Ie Ve . . . Re . 74 74 A T > - 0 0 0 85 D . . Ee . . K He Ah Pt Kh V Lg . Ye Rh Qh . Rh Ie . A . A S . . Ah Rs . 75 75 A E H > S+ 0 0 0 82 Pt Ih . Ae Rh . Yb Ib . Dt Eh Cs Dg . Se . Th Eh Sh . Eh Ph . Rh Kh . . Ah Ds . 76 76 A K H > S+ 0 0 0 72 Qt Ah . D Eh N . N . . Rh D . . K Lh Th Ph Fh . Ah Lh . Nh Kh . . Rh P . 77 77 A G H > S+ 0 0 0 56 . Lh . . Lh Ih . . Lh . Ah . . . . Yh Rh Lh Vh . Mh Rh . Ih Lh . . Ih . . 78 78 A M H X S+ 0 0 0 60 . Lh . . Rh Eh . . Ch . Lh . . . N Sh Eh Ih Ih S Vh Qh . Th Yh . . Lh . . 79 79 A K H X S+ 0 0 0 64 E Nh . . Hh Ah Rb . Ih . Rh . . . Ph Eh Nh Rh Kh Q Vh Kh . Sh Yh . . Ah . . 80 80 A E H X S+ 0 0 0 61 Dh Yh . . Ih Ah Vs . Ah . Rh . . . Lh St Ih Kh Rh V Ah Lh . Hh Yh . . Eh . . 81 81 A F H X S+ 0 0 0 59 Mh Lh . . Lt Th I . Gt . Lh . . . Wh . Mh Gh Lh V . Lh . Yh Fh . . Lh . . 82 82 A E H X S+ 0 0 0 59 Fh Sh . . Gt Hh T . . . Eh . . . Dh . Kh Vh Rt . . Ah . Lh Ah . . Dh . . 83 83 A E H X S+ 0 0 0 58 Dh Sh . . L Vh G . S . Rh . Eh . Ah . Lh Dh . . . Dh . Kh Nh . . Vh . . 84 84 A L H X S+ 0 0 0 52 . . . . . Gh Le . Hs . Ah . Eh . Ih . Th Mh . . . Lh . Lh Xh . . Yh . . 85 85 A H H X S+ 0 0 0 52 . . . Kh . Kh . Ph Ae . Lh . Kh . . . Eh Ah . . . Lh . Lh Lt . . Ah . . 86 86 A E H X S+ 0 0 0 54 . St . Eh . Qh . Yh Ve . A . Kh . . . Kh Mh . . . Hh . Et Et . . Ah . . 87 87 A F H X S+ 0 0 0 46 . M . Ah . Ih . Ah . . . . Eh . . . Ih Rh . . . Hh . Gt Rs . . Lh . . 88 88 A F H X S+ 0 0 0 41 . Ts . Ah . Vh . Mh . . . . Ch . I . Vh Lh . . . Vh . . Ig . . Ah . . 89 89 A K H X S+ 0 0 0 46 . Ps . Qh . Eh . Rh . . . . Dh . P . Kt Mh . . . Ss . Ig . . . Eh . . 90 90 A K H < S+ 0 0 0 48 . . . Ah Ve Kh . Lh It . . . Eh . Sg . Ss Gh . . . Q . Dg Rg . . Vh . . 91 91 A I H < S+ 0 0 0 45 . . . Ih Ee Ih . Yh Wt . . . Et . Fg . Pg Eg . . . N . Ng Lg . . Ah . . 92 92 A V H < 0 0 0 42 . . . Yh Ne Lh . Eh G . . . . . Lg . Lg Qg . . . . . Gs F . . Vh . . 93 93 A C < 0 0 0 39 . . . Th V K . Sh V . . . . . Sg . Cg Fg . . . . . . N . . Rh . . ## ALIGNMENTS 91 - 106 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC OCC . . . . : . . . . : . . . . : . 1 1 A M 0 0 0 4 . . Gt . . . . . . . . . Rt . . . 2 2 A K + 0 0 0 8 . A K . . . . . . . . . St . . . 3 3 A I S > S- 0 0 0 26 . R Sh . . . . Nh Kh . . . Sh . . . 4 4 A R H > S+ 0 0 0 29 . T Kh . . . . Lh Ih . . . Ih . . . 5 5 A K H > S+ 0 0 0 28 . I Rh . . . . Yh Ih . . . . . . . 6 6 A Y H > S+ 0 0 0 29 . R Ah . . Y . Fh Qh . . . . . . . 7 7 A M H X S+ 0 0 0 33 . . . . . N . Qh Sh . . . . . . . 8 8 A R H X S+ 0 0 0 41 . . . . . Kh Vh Sh Qh . Kh . . . . . 9 9 A I H X S+ 0 0 0 40 . . . . . Eh Dg Nh Ih . Ah . . . . . 10 10 A N H < S+ 0 0 0 39 . . . . . Fh Qg Ah Vh . Ah . . . . . 11 11 A Y H < S+ 0 0 0 36 . I . . . Lh Fg Mh Sh . Fh . . . . . 12 12 A Y H < S+ 0 0 0 28 . P . . . Lh . Eh Fh . Dh . . . . . 13 13 A I S < S- 0 0 0 35 . Vh Lh T . Yh . . . Et Fh R . M . . 14 14 A I - 0 0 0 52 . Hh Qh Hh . Lh . . . Gt . M . Ah . . 15 15 A L >> - 0 0 0 94 ah Mh Rh Eh Mh Ah . Lh Kh Gh Vh R Ah Ph Ss Yh 16 16 A K H 3> S+ 0 0 0 99 Eh Eh Eh Lh Nh Gh Mh Nh Lh Rh Eh Mh Sh Ah D Ah 17 17 A V H 3> S+ 0 0 0 96 Vh Th . . Yh Fh Eh Th Fh . Rh . Eh Lh Mh Qh 18 18 A L H <> S+ 0 0 0 103 bh Ih Lh Hh Vh Vh Ih Eh Eh Eh Wh Rh Lh Vt Sh Dh 19 19 A V H X S+ 0 0 0 102 Eh Nh Lh Nh Lh Dh Rh Ih . Yh Qh Ph Sh . Ah Ih 20 20 A I H X S+ 0 0 0 102 Fh Kh Lh Kh Ah Gh Hh Ah . Lh Dh Wh Vh . Ih Fh 21 21 A N H X S+ 0 0 0 102 Lh Lh Lh Fh Ah Dh . Lh . Ih Mh Lh Mh . Vh Lh 22 22 A G H X S+ 0 0 0 101 Vh Sh Vh Lh Lh . . Lh . Lh Lh Eh Kh . Rh Ah 23 23 A S H X S+ 0 0 0 100 Kh Rh Nh Ah Th . . Sh . Vh Ah Eh Vh . Vh Fh 24 24 A R H X S+ 0 0 0 100 Eh Th Lh Ah Lh . Wh Eh . Lh Fh Qh Dh . Mh Lh 25 25 A L H X S+ 0 0 0 99 Vh Ah Kh Vh Lh Se Ih Kh . Lh Ah Ih Mh . Qh Nh 26 26 A E H < S+ 0 0 0 97 Th Rh Rt Dh Nt Ie Eh Ah . Yh Ah Nh Rh . Ls Ys 27 27 A K H < S+ 0 0 0 96 Kh Qh . Hh Gs Ie Th Rh . Me Eh . Hh It Pt Pg 28 28 A K H < S- 0 0 0 93 Lh Lh St Lh V Ae Qs Kh . S Vh . Lh Tt . Dg 29 29 A R S < S+ 0 0 0 81 Ih Qh At G Ss . . Ah . S Th Ie Fh Re . Eg 30 30 A L E +A 72 0A 0 82 . E Ht Vt Ee . . . . F . Fe Wh Le . Rg 31 31 A R E -A 71 0A 0 95 . P Ts A Ie . Ih . . Ls Ch Qe Kh Re V F 32 32 A S E > -A 70 0A 0 99 Ah S P V Ve . Qh . . K G Ie Ah V Ih Kg 33 33 A E H > S+ 0 0 0 96 Ft Yh Lt Ph Ie . Lh . . Dh Es . Lh Sb Gh Ng 34 34 A I H > S+ 0 0 0 96 Dt Eh Rt Kh Ke . Dh . . Eh Q . Nh V Ah Yg 35 35 A L H > S+ 0 0 0 93 Kt Eh At Kh . . Eh . . Eh . . Dh . Dh Vt 36 36 A K H X S+ 0 0 0 91 Ms Ih Lt Ih . . Qh . . Ih . . Ss . Vh . 37 37 A R H <>S+ 0 0 0 90 cg Ah Ft Lh . . Lh . . Ah . . . . Vh . 38 38 A F H ><5S+ 0 0 0 94 Sg Eh Dt Dh . . Gh . Kt Ah . As . . Dh K 39 39 A D H 3<5S+ 0 0 0 93 Kg Ah Kt Lh . . Rh . Dt Vh . Ph . . Wh S 40 40 A I T 3<5S- 0 0 0 90 Ls Mh Hs Mh . . Vh . N Lh . Lh . . Lh Dh 41 41 A D T < 5 + 0 0 0 89 P G Rt N . . . . Qt Nh . Fh . . Yh Qh 42 42 A I < - 0 0 0 67 . W Vt L . . . . It F . Rh . . . Kh 43 43 A S > - 0 0 0 91 Ls D W T Ah . Lh . Qh T . Wh . Dt Ah Sh 44 44 A D H > S+ 0 0 0 94 Sh Ah . Rh Ih . Ih . Rh Ah . Kh . Vt Rh M 45 45 A G H 4 S+ 0 0 0 98 Eh Kh . Eh Sh . Hh . Sh Eh . Ah . Ss Kh Ah 46 46 A V H > S+ 0 0 0 100 Eh Rh R Nh Kh . Nh . Mh Eh . Nh . Ks Yh Kh 47 47 A L H X S+ 0 0 0 102 ch Vh Rh Vh Ah . Lh . Dh Vh D Fh P V Ah Fh 48 48 A Y H X S+ 0 0 0 102 Qh Eh Gh Ah Vh Rh Kh . Ih Kh Eh Rh Eh . Sh Gh 49 49 A P H > S+ 0 0 0 99 Eh Eh Mh Sh Dh Wh Rh . Ih . Nh Ch Ah . Sh Dh 50 50 A L H X S+ 0 0 0 102 Vh Th Mh Hh Th Fh Ih . Kh Kh Gh Ah Vh D Mh Hh 51 51 A I H X S+ 0 0 0 103 Vh Lg Gh Lh Vh Lh Rh . Qh Lh Qh Mh Kh Qh Lh Th 52 52 A D H X S+ 0 0 0 104 Dh Kg Eh Qh Eh Dh Kh . Dh Rt Nh Nh Ah Ah Kh Eh 53 53 A S H X S+ 0 0 0 104 Th Ig Ah Kh Ih Kh Vh . Mh At Lh Sh Vh Gh Ht Kh 54 54 A L H <>S+ 0 0 0 104 Yh As Lh Fh Vh Lh Lh . Fh Ks Ih L Mh Lh Gt Vh 55 55 A I H ><5S+ 0 0 0 99 Gh . Nh Rh Rh Vh Qh . Qh K Rh . Nh Kh . Fh 56 56 A D H 3<5S+ 0 0 0 92 . . Rh Vh Nh Dh Gh . Kh . Vh . Lh . . Nh 57 57 A D T 3<5S- 0 0 0 84 . . . Ah Pt Eh Kh . Fh . Mh . Sh . . Lh 58 58 A K T < 5S+ 0 0 0 87 Sh . . Lh Dt Gs Fh . Ls . Ah Pt Hh . . Mh 59 59 A I S - 0 0 0 56 . . . . Ie Re . . . . . S . . . . 66 66 A P T 3 S+ 0 0 0 36 . . . . Re Gt . . . . . Ib . . . . 67 67 A D T 3 S- 0 0 0 29 . . . . . St . . . . . K . St Qs . 68 68 A G S < S- 0 0 0 46 . . . . . Ve . . . . . Fe . Ge Cs . 69 69 A K S S- 0 0 0 70 . . . . . . . . . . . Re . Ve Y . 70 70 A V E -AB 32 63A 0 77 . . . . Ae De . . . . . Ve . Qe Y . 71 71 A L E -AB 31 62A 0 76 . . . . Ie Ye . . . . . Ye . Ae Ve . 72 72 A F E -AB 30 61A 0 77 . . . . Re Ie . . . . . Re . Ie Fe . 73 73 A L E - B 0 60A 0 79 . . . . Ke Lb . . S . . Me . F G . 74 74 A T > - 0 0 0 85 . . . . K S Ph I Sh . Lg L Ih G D . 75 75 A E H > S+ 0 0 0 82 . . . . . E Mh Ih Eh . Ng P Rh Ts . Th 76 76 A K H > S+ 0 0 0 72 Sh . . . . . Hh Nh Kh . Ag . Dh Ks . Gh 77 77 A G H > S+ 0 0 0 56 Ih . S . . . Vh Eh Lh T Lh . Mh . . Nh 78 78 A M H X S+ 0 0 0 60 Lh . Qh . . . Ah Lh Eh Ph Ph . Mh Sh . Fh 79 79 A K H X S+ 0 0 0 64 Lt . Th . . Nh Vh Ah Dh Qh Dh . Rh Dh . Eh 80 80 A E H X S+ 0 0 0 61 . . Qh . . Fh Vh Vh Fh Qh Vh . Wh Nh . Kh 81 81 A F H X S+ 0 0 0 59 . . Lh . . Lh Ih Lh Kh Vh Lh . Vh Lh . Lh 82 82 A E H X S+ 0 0 0 59 V . Rh . . Th Sh Eh Kh Lh Eh . Lh Kh . Fh 83 83 A E H X S+ 0 0 0 58 S . Qh . . Qh Nh Rh Lh Ah Qh . L Th . Vh 84 84 A L H X S+ 0 0 0 52 Ps . Ah . . Lh Ch Kh Ih Eh Fh . . Eh . Ah 85 85 A H H X S+ 0 0 0 52 Eh . Vh . . Qg Lh Ih Qt Rh Ih . . Mh . Lh 86 86 A E H X S+ 0 0 0 54 Lh . Qh . . Pg Rh Th I Kh Hh . P Dh . Vh 87 87 A F H X S+ 0 0 0 46 . . Lh . . Fg Eh Mh . Kt Lh . S Eh . Eh 88 88 A F H X S+ 0 0 0 41 . . Lh . . L Eh Ah . . Rh . L Yh . Yh 89 89 A K H X S+ 0 0 0 46 . . Th . . Ks Rh Kh . Lt Ah . Q Ih . Mh 90 90 A K H < S+ 0 0 0 48 . . Rh . . . Rh Ah P G Vh . . Rh . Rh 91 91 A I H < S+ 0 0 0 45 . . Th . . . Ih Yh Vs L Sh . . Nh . Ah 92 92 A V H < 0 0 0 42 . . Eh . . . Lh Lh Ds K Eh . . Ft . Ss 93 93 A C < 0 0 0 39 . . Lh . . . Ah Ls D . Ah . . G . Gs ## EQUIVALENCES: ranges of aligned residues NR. STRID1 STRID2 STRID1 <=> STRID2 STRID1 <=> STRID2 1: 6619-A 1jgs-A 7 - 10 <=> 29 - 32 (MET A 7 - ASN A 10 <=> PRO A 35 - ILE A 38) 1: 6619-A 1jgs-A 15 - 66 <=> 33 - 84 (LEU A 15 - PRO A 66 <=> THR A 39 - PRO A 90) 1: 6619-A 1jgs-A 68 - 93 <=> 89 - 114 (GLY A 68 - CYS A 93 <=> GLY A 95 - HIS A 120) 2: 6619-A 1s3j-A 8 - 11 <=> 26 - 29 (ARG A 8 - TYR A 11 <=> GLU A 31 - GLY A 34) 2: 6619-A 1s3j-A 14 - 39 <=> 30 - 55 (ILE A 14 - ASP A 39 <=> VAL A 35 - ARG A 60) 2: 6619-A 1s3j-A 41 - 49 <=> 56 - 64 (ASP A 41 - PRO A 49 <=> GLU A 62 - LEU A 70) 2: 6619-A 1s3j-A 51 - 66 <=> 65 - 80 (ILE A 51 - PRO A 66 <=> ALA A 72 - THR A 87) 2: 6619-A 1s3j-A 68 - 87 <=> 85 - 104 (GLY A 68 - PHE A 87 <=> VAL A 92 - GLY A 111) 2: 6619-A 1s3j-A 89 - 93 <=> 105 - 109 (LYS A 89 - CYS A 93 <=> ARG A 112 - ALA A 117) 3: 6619-A 1smt-A 3 - 10 <=> 12 - 19 (ILE A 3 - ASN A 10 <=> SER A 35 - VAL A 42) 3: 6619-A 1smt-A 15 - 28 <=> 22 - 35 (LEU A 15 - LYS A 28 <=> ASP A 45 - SER A 58) 3: 6619-A 1smt-A 30 - 75 <=> 36 - 81 (LEU A 30 - GLU A 75 <=> GLU A 59 - ASP A 104) 3: 6619-A 1smt-A 78 - 93 <=> 82 - 97 (MET A 78 - CYS A 93 <=> HIS A 105 - GLU A 120) 4: 6619-A 1tbx-A 12 - 15 <=> 3 - 6 (TYR A 12 - LEU A 15 <=> PRO A 5 - TYR A 8) 4: 6619-A 1tbx-A 17 - 41 <=> 7 - 31 (VAL A 17 - ASP A 41 <=> PRO A 9 - ASN A 33) 4: 6619-A 1tbx-A 43 - 93 <=> 36 - 86 (SER A 43 - CYS A 93 <=> SER A 39 - GLN A 89) 5: 6619-A 1p4x-A 12 - 28 <=> 30 - 46 (TYR A 12 - LYS A 28 <=> VAL A 30 - GLN A 46) 5: 6619-A 1p4x-A 29 - 66 <=> 49 - 86 (ARG A 29 - PRO A 66 <=> ASN A 49 - LYS A 86) 5: 6619-A 1p4x-A 68 - 93 <=> 91 - 116 (GLY A 68 - CYS A 93 <=> ASN A 91 - LYS A 116) 6: 6619-A 1lj9-A 7 - 10 <=> 22 - 25 (MET A 7 - ASN A 10 <=> PHE A 23 - LEU A 26) 6: 6619-A 1lj9-A 15 - 65 <=> 28 - 78 (LEU A 15 - ALA A 65 <=> THR A 29 - ASP A 79) 6: 6619-A 1lj9-A 66 - 93 <=> 82 - 109 (PRO A 66 - CYS A 93 <=> LYS A 83 - GLN A 110) 7: 6619-A 1r7j-A 15 - 26 <=> 5 - 16 (LEU A 15 - GLU A 26 <=> LEU A 7 - LYS A 18) 7: 6619-A 1r7j-A 29 - 64 <=> 17 - 52 (ARG A 29 - GLU A 64 <=> SER A 19 - GLY A 54) 7: 6619-A 1r7j-A 69 - 93 <=> 53 - 77 (LYS A 69 - CYS A 93 <=> LYS A 55 - ASN A 79) 8: 6619-A 1fnn-A 7 - 29 <=> 278 - 300 (MET A 7 - ARG A 29 <=> SER A 278 - LEU A 300) 8: 6619-A 1fnn-A 30 - 41 <=> 307 - 318 (LEU A 30 - ASP A 41 <=> TYR A 307 - LYS A 318) 8: 6619-A 1fnn-A 42 - 65 <=> 329 - 352 (ILE A 42 - ALA A 65 <=> ARG A 329 - ASN A 352) 8: 6619-A 1fnn-A 68 - 76 <=> 353 - 361 (GLY A 68 - LYS A 76 <=> THR A 362 - GLU A 370) 8: 6619-A 1fnn-A 79 - 93 <=> 365 - 379 (LYS A 79 - CYS A 93 <=> THR A 374 - ARG A 388) 9: 6619-A 1fy7-A 15 - 27 <=> 190 - 202 (LEU A 15 - LYS A 27 <=> ALA A 351 - GLU A 363) 9: 6619-A 1fy7-A 28 - 55 <=> 204 - 231 (LYS A 28 - ILE A 55 <=> GLN A 365 - ASN A 392) 9: 6619-A 1fy7-A 61 - 87 <=> 232 - 258 (ARG A 61 - PHE A 87 <=> ILE A 393 - LYS A 419) 9: 6619-A 1fy7-A 89 - 92 <=> 259 - 262 (LYS A 89 - VAL A 92 <=> LYS A 420 - THR A 423) 10: 6619-A 1fpx-A 3 - 10 <=> 18 - 25 (ILE A 3 - ASN A 10 <=> TYR A 25 - SER A 32) 10: 6619-A 1fpx-A 15 - 18 <=> 30 - 33 (LEU A 15 - LEU A 18 <=> VAL A 37 - ASN A 40) 10: 6619-A 1fpx-A 21 - 28 <=> 34 - 41 (ASN A 21 - LYS A 28 <=> ILE A 41 - HIS A 48) 10: 6619-A 1fpx-A 29 - 42 <=> 43 - 56 (ARG A 29 - ILE A 42 <=> LYS A 50 - VAL A 63) 10: 6619-A 1fpx-A 43 - 66 <=> 60 - 83 (SER A 43 - PRO A 66 <=> LYS A 67 - GLU A 90) 10: 6619-A 1fpx-A 68 - 81 <=> 84 - 97 (GLY A 68 - PHE A 81 <=> GLU A 91 - VAL A 104) 10: 6619-A 1fpx-A 82 - 90 <=> 103 - 111 (GLU A 82 - LYS A 90 <=> CYS A 110 - VAL A 118) 11: 6619-A 1qbj-A 15 - 28 <=> 4 - 17 (LEU A 15 - LYS A 28 <=> GLN A 137 - LEU A 150) 11: 6619-A 1qbj-A 29 - 66 <=> 21 - 58 (ARG A 29 - PRO A 66 <=> LYS A 154 - THR A 191) 11: 6619-A 1qbj-A 68 - 74 <=> 59 - 65 (GLY A 68 - THR A 74 <=> PRO A 192 - ALA A 198) 12: 6619-A 1hqc-A 4 - 7 <=> 194 - 197 (ARG A 4 - MET A 7 <=> ARG A 198 - ARG A 201) 12: 6619-A 1hqc-A 9 - 12 <=> 235 - 238 (ILE A 9 - TYR A 12 <=> GLY A 239 - GLU A 242) 12: 6619-A 1hqc-A 14 - 26 <=> 241 - 253 (ILE A 14 - GLU A 26 <=> LEU A 245 - ILE A 257) 12: 6619-A 1hqc-A 27 - 30 <=> 256 - 259 (LYS A 27 - LEU A 30 <=> PHE A 260 - GLY A 263) 12: 6619-A 1hqc-A 31 - 49 <=> 261 - 279 (ARG A 31 - PRO A 49 <=> VAL A 265 - GLU A 283) 12: 6619-A 1hqc-A 50 - 65 <=> 281 - 296 (LEU A 50 - ALA A 65 <=> HIS A 285 - ARG A 300) 12: 6619-A 1hqc-A 70 - 83 <=> 297 - 310 (VAL A 70 - GLU A 83 <=> GLY A 301 - TYR A 314) 13: 6619-A 1bi0 13 - 16 <=> 1 - 4 (ILE A 13 - LYS A 16 <=> LEU 4 - THR 7) 13: 6619-A 1bi0 18 - 29 <=> 5 - 16 (LEU A 18 - ARG A 29 <=> THR 8 - GLU 19) 13: 6619-A 1bi0 31 - 65 <=> 22 - 56 (ARG A 31 - ALA A 65 <=> PRO 25 - ASP 59) 13: 6619-A 1bi0 69 - 93 <=> 57 - 81 (LYS A 69 - CYS A 93 <=> ARG 60 - ARG 84) 14: 6619-A 1on1-A 7 - 10 <=> 1 - 4 (MET A 7 - ASN A 10 <=> THR A 2 - SER A 5) 14: 6619-A 1on1-A 15 - 61 <=> 6 - 52 (LEU A 15 - ARG A 61 <=> GLU A 7 - ILE A 53) 14: 6619-A 1on1-A 70 - 93 <=> 53 - 76 (VAL A 70 - CYS A 93 <=> GLY A 59 - GLN A 82) 15: 6619-A 1qzz-A 3 - 6 <=> 14 - 17 (ILE A 3 - TYR A 6 <=> ASN A 23 - ASN A 26) 15: 6619-A 1qzz-A 8 - 11 <=> 18 - 21 (ARG A 8 - TYR A 11 <=> LEU A 27 - PRO A 30) 15: 6619-A 1qzz-A 16 - 19 <=> 25 - 28 (LYS A 16 - VAL A 19 <=> ARG A 34 - ALA A 37) 15: 6619-A 1qzz-A 20 - 28 <=> 31 - 39 (ILE A 20 - LYS A 28 <=> ARG A 40 - GLY A 48) 15: 6619-A 1qzz-A 31 - 65 <=> 41 - 75 (ARG A 31 - ALA A 65 <=> ASP A 50 - LYS A 84) 15: 6619-A 1qzz-A 68 - 78 <=> 76 - 86 (GLY A 68 - MET A 78 <=> GLY A 86 - MET A 96) 15: 6619-A 1qzz-A 80 - 83 <=> 87 - 90 (GLU A 80 - GLU A 83 <=> LEU A 97 - ASP A 100) 15: 6619-A 1qzz-A 84 - 93 <=> 96 - 105 (LEU A 84 - CYS A 93 <=> GLN A 106 - ALA A 115) 16: 6619-A 1bja-A 7 - 11 <=> 10 - 14 (MET A 7 - TYR A 11 <=> SER A 11 - LEU A 15) 16: 6619-A 1bja-A 15 - 41 <=> 15 - 41 (LEU A 15 - ASP A 41 <=> ASN A 16 - PRO A 42) 16: 6619-A 1bja-A 42 - 64 <=> 43 - 65 (ILE A 42 - GLU A 64 <=> LEU A 44 - GLY A 66) 16: 6619-A 1bja-A 69 - 87 <=> 66 - 84 (LYS A 69 - PHE A 87 <=> ASP A 67 - LEU A 85) 16: 6619-A 1bja-A 89 - 93 <=> 85 - 89 (LYS A 89 - CYS A 93 <=> TYR A 86 - ASN A 90) 17: 6619-A 1lva-A 5 - 8 <=> 130 - 133 (LYS A 5 - ARG A 8 <=> PHE A 507 - SER A 510) 17: 6619-A 1lva-A 11 - 14 <=> 134 - 137 (TYR A 11 - ILE A 14 <=> PHE A 511 - THR A 514) 17: 6619-A 1lva-A 15 - 29 <=> 139 - 153 (LEU A 15 - ARG A 29 <=> LYS A 516 - ARG A 530) 17: 6619-A 1lva-A 30 - 64 <=> 156 - 190 (LEU A 30 - GLU A 64 <=> PRO A 533 - ASN A 567) 17: 6619-A 1lva-A 68 - 75 <=> 191 - 198 (GLY A 68 - GLU A 75 <=> ASP A 568 - GLN A 575) 18: 6619-A 1ldd-A 15 - 41 <=> 7 - 33 (LEU A 15 - ASP A 41 <=> GLN A 779 - LYS A 805) 18: 6619-A 1ldd-A 43 - 65 <=> 46 - 68 (SER A 43 - ALA A 65 <=> THR A 818 - ASN A 840) 18: 6619-A 1ldd-A 69 - 74 <=> 69 - 74 (LYS A 69 - THR A 74 <=> GLY A 841 - VAL A 846) 19: 6619-A 1okr-A 7 - 10 <=> 1 - 4 (MET A 7 - ASN A 10 <=> LYS A 4 - GLU A 7) 19: 6619-A 1okr-A 14 - 41 <=> 5 - 32 (ILE A 14 - ASP A 41 <=> ILE A 8 - GLN A 35) 19: 6619-A 1okr-A 42 - 73 <=> 37 - 68 (ILE A 42 - LEU A 73 <=> TRP A 40 - SER A 71) 19: 6619-A 1okr-A 77 - 80 <=> 69 - 72 (GLY A 77 - GLU A 80 <=> LEU A 72 - GLU A 75) 19: 6619-A 1okr-A 82 - 86 <=> 73 - 77 (GLU A 82 - GLU A 86 <=> SER A 76 - TYR A 80) 20: 6619-A 1mzb-A 7 - 11 <=> 4 - 8 (MET A 7 - TYR A 11 <=> ASN A 4 - ARG A 8) 20: 6619-A 1mzb-A 13 - 28 <=> 13 - 28 (ILE A 13 - LYS A 28 <=> LYS A 13 - ALA A 28) 20: 6619-A 1mzb-A 29 - 41 <=> 30 - 42 (ARG A 29 - ASP A 41 <=> ARG A 31 - MET A 43) 20: 6619-A 1mzb-A 42 - 66 <=> 48 - 72 (ILE A 42 - PRO A 66 <=> VAL A 49 - ASP A 73) 20: 6619-A 1mzb-A 68 - 76 <=> 75 - 83 (GLY A 68 - LYS A 76 <=> HIS A 76 - SER A 84) 21: 6619-A 1jmr-A 12 - 28 <=> 1 - 17 (TYR A 12 - LYS A 28 <=> MET A 1 - ASN A 17) 21: 6619-A 1jmr-A 29 - 65 <=> 19 - 55 (ARG A 29 - ALA A 65 <=> GLY A 19 - ASP A 55) 21: 6619-A 1jmr-A 69 - 77 <=> 56 - 64 (LYS A 69 - GLY A 77 <=> LYS A 56 - LEU A 64) 22: 6619-A 1ecl 4 - 7 <=> 164 - 167 (ARG A 4 - MET A 7 <=> ALA 188 - LEU 191) 22: 6619-A 1ecl 14 - 29 <=> 169 - 184 (ILE A 14 - ARG A 29 <=> ALA 193 - GLU 208) 22: 6619-A 1ecl 30 - 41 <=> 438 - 449 (LEU A 30 - ASP A 41 <=> ARG 476 - GLU 487) 22: 6619-A 1ecl 42 - 64 <=> 454 - 476 (ILE A 42 - GLU A 64 <=> GLY 492 - ASN 514) 22: 6619-A 1ecl 69 - 90 <=> 477 - 498 (LYS A 69 - LYS A 90 <=> ARG 515 - GLU 536) 23: 6619-A 1ldj-A 8 - 11 <=> 548 - 551 (ARG A 8 - TYR A 11 <=> TYR A 599 - GLN A 602) 23: 6619-A 1ldj-A 14 - 64 <=> 552 - 602 (ILE A 14 - GLU A 64 <=> ALA A 603 - ASP A 653) 23: 6619-A 1ldj-A 68 - 76 <=> 615 - 623 (GLY A 68 - LYS A 76 <=> ASP A 666 - GLY A 674) 24: 6619-A 1iz1-A 15 - 28 <=> 2 - 15 (LEU A 15 - LYS A 28 <=> GLU A 2 - ALA A 15) 24: 6619-A 1iz1-A 31 - 56 <=> 16 - 41 (ARG A 31 - ASP A 56 <=> GLY A 16 - ALA A 41) 24: 6619-A 1iz1-A 57 - 65 <=> 45 - 53 (ASP A 57 - ALA A 65 <=> VAL A 45 - ARG A 53) 24: 6619-A 1iz1-A 70 - 93 <=> 54 - 77 (VAL A 70 - CYS A 93 <=> GLY A 54 - ARG A 77) 25: 6619-A 1ft9-A 15 - 29 <=> 132 - 146 (LEU A 15 - ARG A 29 <=> HIS A 133 - ALA A 147) 25: 6619-A 1ft9-A 30 - 33 <=> 159 - 162 (LEU A 30 - GLU A 33 <=> VAL A 162 - THR A 165) 25: 6619-A 1ft9-A 34 - 65 <=> 164 - 195 (ILE A 34 - ALA A 65 <=> GLU A 167 - ARG A 198) 25: 6619-A 1ft9-A 69 - 75 <=> 196 - 202 (LYS A 69 - GLU A 75 <=> GLY A 199 - ASN A 205) 25: 6619-A 1ft9-A 78 - 85 <=> 203 - 210 (MET A 78 - HIS A 85 <=> LEU A 206 - ALA A 213) 26: 6619-A 1dpu-A 8 - 11 <=> 1 - 4 (ARG A 8 - TYR A 11 <=> ALA A 202 - LEU A 205) 26: 6619-A 1dpu-A 15 - 28 <=> 5 - 18 (LEU A 15 - LYS A 28 <=> THR A 206 - CYS A 219) 26: 6619-A 1dpu-A 30 - 41 <=> 23 - 34 (LEU A 30 - ASP A 41 <=> GLY A 224 - LYS A 235) 26: 6619-A 1dpu-A 42 - 65 <=> 36 - 59 (ILE A 42 - ALA A 65 <=> MET A 237 - ASP A 260) 26: 6619-A 1dpu-A 69 - 76 <=> 61 - 68 (LYS A 69 - LYS A 76 <=> ASP A 262 - ALA A 269) 27: 6619-A 2fok-A 3 - 11 <=> 138 - 146 (ILE A 3 - TYR A 11 <=> LYS A 149 - SER A 157) 27: 6619-A 2fok-A 14 - 41 <=> 147 - 174 (ILE A 14 - ASP A 41 <=> SER A 158 - GLY A 185) 27: 6619-A 2fok-A 43 - 65 <=> 212 - 234 (SER A 43 - ALA A 65 <=> SER A 223 - LYS A 245) 27: 6619-A 2fok-A 66 - 86 <=> 244 - 264 (PRO A 66 - GLU A 86 <=> PHE A 260 - GLY A 280) 27: 6619-A 2fok-A 90 - 93 <=> 353 - 356 (LYS A 90 - CYS A 93 <=> ASP A 369 - LEU A 372) 28: 6619-A 1ucr-A 14 - 27 <=> 1 - 14 (ILE A 14 - LYS A 27 <=> MET A 1 - SER A 14) 28: 6619-A 1ucr-A 31 - 41 <=> 22 - 32 (ARG A 31 - ASP A 41 <=> PHE A 22 - PRO A 32) 28: 6619-A 1ucr-A 42 - 75 <=> 34 - 67 (ILE A 42 - GLU A 75 <=> MET A 34 - GLY A 67) 29: 6619-A 1gku-B 3 - 7 <=> 664 - 668 (ILE A 3 - MET A 7 <=> ASN B 707 - LEU B 711) 29: 6619-A 1gku-B 14 - 29 <=> 670 - 685 (ILE A 14 - ARG A 29 <=> ALA B 713 - PHE B 728) 29: 6619-A 1gku-B 30 - 40 <=> 912 - 922 (LEU A 30 - ILE A 40 <=> PRO B 955 - MET B 965) 29: 6619-A 1gku-B 41 - 44 <=> 927 - 930 (ASP A 41 - ASP A 44 <=> ILE B 970 - PRO B 973) 29: 6619-A 1gku-B 45 - 48 <=> 932 - 935 (GLY A 45 - TYR A 48 <=> THR B 975 - THR B 978) 29: 6619-A 1gku-B 52 - 64 <=> 938 - 950 (ASP A 52 - GLU A 64 <=> ASP B 981 - TYR B 993) 29: 6619-A 1gku-B 69 - 91 <=> 951 - 973 (LYS A 69 - ILE A 91 <=> GLY B 994 - PHE B1016) 30: 6619-A 1oyi-A 15 - 29 <=> 1 - 15 (LEU A 15 - ARG A 29 <=> ARG A 13 - GLY A 27) 30: 6619-A 1oyi-A 30 - 67 <=> 18 - 55 (LEU A 30 - ASP A 67 <=> GLY A 30 - PRO A 67) 30: 6619-A 1oyi-A 69 - 75 <=> 56 - 62 (LYS A 69 - GLU A 75 <=> PRO A 68 - THR A 74) 31: 6619-A 1sey-A 2 - 5 <=> 14 - 17 (LYS A 2 - LYS A 5 <=> LYS A 14 - ILE A 17) 31: 6619-A 1sey-A 15 - 19 <=> 45 - 49 (LEU A 15 - VAL A 19 <=> ALA A 29 - GLY A 33) 31: 6619-A 1sey-A 20 - 28 <=> 52 - 60 (ILE A 20 - LYS A 28 <=> ASP A 36 - ARG A 44) 31: 6619-A 1sey-A 30 - 40 <=> 65 - 75 (LEU A 30 - ILE A 40 <=> LEU A 49 - PRO A 59) 31: 6619-A 1sey-A 43 - 66 <=> 82 - 105 (SER A 43 - PRO A 66 <=> GLU A 66 - ALA A 89) 31: 6619-A 1sey-A 68 - 82 <=> 112 - 126 (GLY A 68 - GLU A 82 <=> ARG A 96 - ASP A 110) 31: 6619-A 1sey-A 83 - 93 <=> 132 - 142 (GLU A 83 - CYS A 93 <=> GLY A 116 - PHE A 126) 32: 6619-A 1ku9-A 9 - 13 <=> 16 - 20 (ILE A 9 - ILE A 13 <=> LEU A 18 - HIS A 22) 32: 6619-A 1ku9-A 14 - 28 <=> 22 - 36 (ILE A 14 - LYS A 28 <=> LEU A 24 - SER A 38) 32: 6619-A 1ku9-A 30 - 36 <=> 39 - 45 (LEU A 30 - LYS A 36 <=> PRO A 41 - ILE A 47) 32: 6619-A 1ku9-A 38 - 48 <=> 46 - 56 (PHE A 38 - TYR A 48 <=> GLU A 49 - SER A 59) 32: 6619-A 1ku9-A 50 - 65 <=> 57 - 72 (LEU A 50 - ALA A 65 <=> SER A 61 - ILE A 76) 32: 6619-A 1ku9-A 66 - 76 <=> 75 - 85 (PRO A 66 - LYS A 76 <=> GLU A 79 - GLY A 89) 32: 6619-A 1ku9-A 79 - 82 <=> 86 - 89 (LYS A 79 - GLU A 82 <=> PHE A 90 - ILE A 93) 33: 6619-A 1hst-A 13 - 28 <=> 1 - 16 (ILE A 13 - LYS A 28 <=> SER A 24 - GLU A 39) 33: 6619-A 1hst-A 30 - 41 <=> 21 - 32 (LEU A 30 - ASP A 41 <=> GLY A 44 - LYS A 55) 33: 6619-A 1hst-A 43 - 64 <=> 41 - 62 (SER A 43 - GLU A 64 <=> ALA A 64 - LYS A 85) 33: 6619-A 1hst-A 66 - 75 <=> 65 - 74 (PRO A 66 - GLU A 75 <=> GLY A 88 - LYS A 97) 34: 6619-A 1p41-A 15 - 28 <=> 5 - 18 (LEU A 15 - LYS A 28 <=> SER A 6 - HIS A 19) 34: 6619-A 1p41-A 29 - 58 <=> 21 - 50 (ARG A 29 - LYS A 58 <=> GLU A 22 - PHE A 51) 34: 6619-A 1p41-A 59 - 67 <=> 57 - 65 (ILE A 59 - ASP A 67 <=> THR A 58 - ALA A 66) 34: 6619-A 1p41-A 69 - 76 <=> 66 - 73 (LYS A 69 - LYS A 76 <=> GLY A 67 - LYS A 74) 35: 6619-A 1b9m-A 3 - 6 <=> 12 - 15 (ILE A 3 - TYR A 6 <=> LEU A 11 - LYS A 14) 35: 6619-A 1b9m-A 15 - 25 <=> 19 - 29 (LEU A 15 - LEU A 25 <=> ASP A 18 - ILE A 28) 35: 6619-A 1b9m-A 31 - 56 <=> 33 - 58 (ARG A 31 - ASP A 56 <=> GLY A 32 - GLN A 57) 35: 6619-A 1b9m-A 57 - 65 <=> 62 - 70 (ASP A 57 - ALA A 65 <=> HIS A 61 - GLY A 74) 35: 6619-A 1b9m-A 70 - 93 <=> 71 - 94 (VAL A 70 - CYS A 93 <=> GLY A 75 - LYS A 98) 36: 6619-A 1bm9-A 15 - 28 <=> 15 - 28 (LEU A 15 - LYS A 28 <=> ALA A 17 - GLU A 30) 36: 6619-A 1bm9-A 31 - 41 <=> 30 - 40 (ARG A 31 - ASP A 41 <=> LEU A 32 - ARG A 42) 36: 6619-A 1bm9-A 42 - 66 <=> 50 - 74 (ILE A 42 - PRO A 66 <=> PRO A 52 - LYS A 76) 36: 6619-A 1bm9-A 67 - 73 <=> 82 - 88 (ASP A 67 - LEU A 73 <=> GLU A 84 - PHE A 90) 36: 6619-A 1bm9-A 74 - 93 <=> 90 - 109 (THR A 74 - CYS A 93 <=> ASP A 92 - LYS A 111) 37: 6619-A 1bia 15 - 56 <=> 4 - 45 (LEU A 15 - ASP A 56 <=> ASN 4 - ASP 45) 37: 6619-A 1bia 57 - 65 <=> 47 - 55 (ASP A 57 - ALA A 65 <=> GLY 47 - GLY 55) 37: 6619-A 1bia 69 - 75 <=> 56 - 62 (LYS A 69 - GLU A 75 <=> LYS 56 - GLU 62) 37: 6619-A 1bia 84 - 87 <=> 65 - 68 (LEU A 84 - PHE A 87 <=> GLN 65 - ASN 68) 37: 6619-A 1bia 90 - 93 <=> 69 - 72 (LYS A 90 - CYS A 93 <=> ALA 69 - ILE 72) 38: 6619-A 1cf7-B 15 - 41 <=> 5 - 31 (LEU A 15 - ASP A 41 <=> ARG B 72 - VAL B 98) 38: 6619-A 1cf7-B 43 - 64 <=> 52 - 73 (SER A 43 - GLU A 64 <=> ILE B 119 - LYS B 140) 38: 6619-A 1cf7-B 69 - 76 <=> 74 - 81 (LYS A 69 - LYS A 76 <=> LYS B 141 - LEU B 148) 39: 6619-A 1iuy-A 15 - 41 <=> 25 - 51 (LEU A 15 - ASP A 41 <=> HIS A 25 - THR A 51) 39: 6619-A 1iuy-A 42 - 66 <=> 60 - 84 (ILE A 42 - PRO A 66 <=> PRO A 60 - ASP A 84) 39: 6619-A 1iuy-A 68 - 74 <=> 85 - 91 (GLY A 68 - THR A 74 <=> ARG A 85 - VAL A 91) 40: 6619-A 1fpq-A 3 - 7 <=> 14 - 18 (ILE A 3 - MET A 7 <=> THR A 33 - TYR A 37) 40: 6619-A 1fpq-A 16 - 19 <=> 23 - 26 (LYS A 16 - VAL A 19 <=> ASN A 42 - ILE A 45) 40: 6619-A 1fpq-A 20 - 28 <=> 29 - 37 (ILE A 20 - LYS A 28 <=> ASN A 48 - ALA A 56) 40: 6619-A 1fpq-A 29 - 41 <=> 42 - 54 (ARG A 29 - ASP A 41 <=> ALA A 61 - PRO A 73) 40: 6619-A 1fpq-A 43 - 66 <=> 62 - 85 (SER A 43 - PRO A 66 <=> LEU A 81 - THR A 104) 40: 6619-A 1fpq-A 67 - 79 <=> 91 - 103 (ASP A 67 - LYS A 79 <=> ALA A 110 - TYR A 122) 40: 6619-A 1fpq-A 81 - 84 <=> 104 - 107 (PHE A 81 - LEU A 84 <=> LEU A 123 - ASP A 126) 41: 6619-A 1d6m-A 8 - 11 <=> 185 - 188 (ARG A 8 - TYR A 11 <=> GLY A 191 - SER A 194) 41: 6619-A 1d6m-A 14 - 29 <=> 189 - 204 (ILE A 14 - ARG A 29 <=> VAL A 195 - ASP A 210) 41: 6619-A 1d6m-A 30 - 41 <=> 484 - 495 (LEU A 30 - ASP A 41 <=> HIS A 490 - THR A 501) 41: 6619-A 1d6m-A 42 - 64 <=> 517 - 539 (ILE A 42 - GLU A 64 <=> GLY A 523 - GLY A 545) 41: 6619-A 1d6m-A 69 - 83 <=> 540 - 554 (LYS A 69 - GLU A 83 <=> ARG A 546 - SER A 560) 41: 6619-A 1d6m-A 86 - 89 <=> 555 - 558 (GLU A 86 - LYS A 89 <=> LEU A 561 - MET A 564) 42: 6619-A 2cgp-A 13 - 29 <=> 128 - 144 (ILE A 13 - ARG A 29 <=> ALA A 135 - ALA A 151) 42: 6619-A 2cgp-A 31 - 64 <=> 160 - 193 (ARG A 31 - GLU A 64 <=> ILE A 167 - GLY A 200) 42: 6619-A 2cgp-A 69 - 75 <=> 194 - 200 (LYS A 69 - GLU A 75 <=> LYS A 201 - GLY A 207) 43: 6619-A 1lea 14 - 29 <=> 4 - 19 (ILE A 14 - ARG A 29 <=> LEU 4 - ILE 19) 43: 6619-A 1lea 30 - 42 <=> 25 - 37 (LEU A 30 - ILE A 42 <=> PRO 25 - PHE 37) 43: 6619-A 1lea 43 - 66 <=> 39 - 62 (SER A 43 - PRO A 66 <=> SER 39 - ALA 62) 43: 6619-A 1lea 68 - 76 <=> 63 - 71 (GLY A 68 - LYS A 76 <=> SER 63 - GLU 71) 44: 6619-A 1kgs-A 8 - 11 <=> 147 - 150 (ARG A 8 - TYR A 11 <=> LYS A 148 - ASP A 151) 44: 6619-A 1kgs-A 14 - 29 <=> 151 - 166 (ILE A 14 - ARG A 29 <=> LEU A 152 - LYS A 167) 44: 6619-A 1kgs-A 30 - 56 <=> 169 - 195 (LEU A 30 - ASP A 56 <=> VAL A 170 - LYS A 201) 44: 6619-A 1kgs-A 58 - 65 <=> 204 - 211 (LYS A 58 - ALA A 65 <=> LYS A 210 - GLY A 217) 44: 6619-A 1kgs-A 69 - 76 <=> 212 - 219 (LYS A 69 - LYS A 76 <=> ILE A 218 - GLU A 225) 45: 6619-A 1e2x-A 15 - 25 <=> 5 - 15 (LEU A 15 - LEU A 25 <=> GLY A 10 - ILE A 20) 45: 6619-A 1e2x-A 26 - 29 <=> 18 - 21 (GLU A 26 - ARG A 29 <=> ASN A 23 - PRO A 26) 45: 6619-A 1e2x-A 30 - 65 <=> 26 - 61 (LEU A 30 - ALA A 65 <=> LEU A 31 - GLY A 66) 45: 6619-A 1e2x-A 69 - 76 <=> 62 - 69 (LYS A 69 - LYS A 76 <=> LYS A 67 - PHE A 74) 45: 6619-A 1e2x-A 83 - 90 <=> 79 - 86 (GLU A 83 - LYS A 90 <=> GLU A 84 - HIS A 91) 46: 6619-A 2bby 8 - 11 <=> 1 - 4 (ARG A 8 - TYR A 11 <=> ARG 175 - ALA 178) 46: 6619-A 2bby 15 - 38 <=> 7 - 30 (LEU A 15 - PHE A 38 <=> GLN 181 - ASP 204) 46: 6619-A 2bby 40 - 43 <=> 31 - 34 (ILE A 40 - SER A 43 <=> ILE 205 - GLN 208) 46: 6619-A 2bby 46 - 56 <=> 35 - 45 (VAL A 46 - ASP A 56 <=> PRO 209 - GLU 219) 46: 6619-A 2bby 59 - 64 <=> 46 - 51 (ILE A 59 - GLU A 64 <=> ILE 220 - VAL 225) 46: 6619-A 2bby 68 - 76 <=> 56 - 64 (GLY A 68 - LYS A 76 <=> LYS 230 - GLU 238) 47: 6619-A 1i1g-A 14 - 60 <=> 1 - 47 (ILE A 14 - LEU A 60 <=> ILE A 2 - ILE A 48) 47: 6619-A 1i1g-A 76 - 79 <=> 48 - 51 (LYS A 76 - LYS A 79 <=> GLU A 49 - THR A 52) 48: 6619-A 1hkq-A 6 - 14 <=> 1 - 9 (TYR A 6 - ILE A 14 <=> GLN A 8 - SER A 16) 48: 6619-A 1hkq-A 16 - 27 <=> 17 - 28 (LYS A 16 - LYS A 27 <=> LYS A 24 - ASP A 35) 48: 6619-A 1hkq-A 29 - 41 <=> 38 - 50 (ARG A 29 - ASP A 41 <=> TYR A 45 - PHE A 57) 48: 6619-A 1hkq-A 43 - 57 <=> 57 - 71 (SER A 43 - ASP A 57 <=> ALA A 64 - ARG A 78) 48: 6619-A 1hkq-A 58 - 61 <=> 86 - 89 (LYS A 58 - ARG A 61 <=> ARG A 93 - PHE A 96) 48: 6619-A 1hkq-A 62 - 65 <=> 91 - 94 (GLU A 62 - ALA A 65 <=> VAL A 98 - ARG A 101) 48: 6619-A 1hkq-A 67 - 93 <=> 98 - 124 (ASP A 67 - CYS A 93 <=> GLY A 105 - LEU A 131) 49: 6619-A 1ufm-A 15 - 58 <=> 15 - 58 (LEU A 15 - LYS A 58 <=> ALA A 303 - GLY A 346) 49: 6619-A 1ufm-A 59 - 65 <=> 61 - 67 (ILE A 59 - ALA A 65 <=> ASN A 349 - ILE A 355) 49: 6619-A 1ufm-A 68 - 75 <=> 68 - 75 (GLY A 68 - GLU A 75 <=> ASP A 356 - THR A 363) 50: 6619-A 1omi-A 11 - 14 <=> 127 - 130 (TYR A 11 - ILE A 14 <=> PHE A1131 - PHE A1134) 50: 6619-A 1omi-A 15 - 28 <=> 137 - 150 (LEU A 15 - LYS A 28 <=> GLY A1141 - TYR A1154) 50: 6619-A 1omi-A 29 - 32 <=> 158 - 161 (ARG A 29 - SER A 32 <=> ILE A1162 - THR A1165) 50: 6619-A 1omi-A 37 - 40 <=> 167 - 170 (ARG A 37 - ILE A 40 <=> MET A1171 - LEU A1174) 50: 6619-A 1omi-A 45 - 64 <=> 171 - 190 (GLY A 45 - GLU A 64 <=> SER A1184 - ASN A1203) 50: 6619-A 1omi-A 69 - 74 <=> 191 - 196 (LYS A 69 - THR A 74 <=> SER A1204 - GLN A1209) 50: 6619-A 1omi-A 77 - 93 <=> 197 - 213 (GLY A 77 - CYS A 93 <=> ASN A1210 - TYR A1226) 51: 6619-A 1d8j-A 11 - 14 <=> 5 - 8 (TYR A 11 - ILE A 14 <=> SER A 5 - TYR A 8) 51: 6619-A 1d8j-A 15 - 29 <=> 10 - 24 (LEU A 15 - ARG A 29 <=> PHE A 10 - HIS A 24) 51: 6619-A 1d8j-A 30 - 42 <=> 31 - 43 (LEU A 30 - ILE A 42 <=> PRO A 31 - HIS A 43) 51: 6619-A 1d8j-A 43 - 48 <=> 50 - 55 (SER A 43 - TYR A 48 <=> GLN A 50 - MET A 55) 51: 6619-A 1d8j-A 49 - 55 <=> 57 - 63 (PRO A 49 - ILE A 55 <=> GLU A 57 - PRO A 63) 51: 6619-A 1d8j-A 59 - 64 <=> 64 - 69 (ILE A 59 - GLU A 64 <=> LYS A 64 - ASP A 69) 51: 6619-A 1d8j-A 69 - 76 <=> 70 - 77 (LYS A 69 - LYS A 76 <=> GLY A 70 - LYS A 77) 52: 6619-A 1b4a-A 15 - 28 <=> 1 - 14 (LEU A 15 - LYS A 28 <=> GLY A 4 - ASN A 17) 52: 6619-A 1b4a-A 30 - 41 <=> 16 - 27 (LEU A 30 - ASP A 41 <=> ILE A 19 - ARG A 30) 52: 6619-A 1b4a-A 42 - 55 <=> 33 - 46 (ILE A 42 - ILE A 55 <=> VAL A 36 - GLN A 49) 52: 6619-A 1b4a-A 60 - 66 <=> 47 - 53 (LEU A 60 - PRO A 66 <=> LEU A 50 - ALA A 56) 52: 6619-A 1b4a-A 69 - 76 <=> 57 - 64 (LYS A 69 - LYS A 76 <=> TYR A 60 - ASP A 67) 53: 6619-A 1fse-A 8 - 11 <=> 1 - 4 (ARG A 8 - TYR A 11 <=> SER A 8 - LEU A 11) 53: 6619-A 1fse-A 14 - 28 <=> 5 - 19 (ILE A 14 - LYS A 28 <=> LEU A 12 - ASP A 26) 53: 6619-A 1fse-A 31 - 56 <=> 20 - 45 (ARG A 31 - ASP A 56 <=> LYS A 27 - GLN A 52) 53: 6619-A 1fse-A 57 - 60 <=> 49 - 52 (ASP A 57 - LEU A 60 <=> VAL A 56 - ARG A 59) 53: 6619-A 1fse-A 75 - 82 <=> 53 - 60 (GLU A 75 - GLU A 82 <=> SER A 60 - LEU A 67) 53: 6619-A 1fse-A 83 - 86 <=> 63 - 66 (GLU A 83 - GLU A 86 <=> GLY A 70 - GLU A 73) 54: 6619-A 1opc 3 - 6 <=> 18 - 21 (ILE A 3 - TYR A 6 <=> ARG 154 - GLU 157) 54: 6619-A 1opc 12 - 29 <=> 23 - 40 (TYR A 12 - ARG A 29 <=> MET 159 - PRO 176) 54: 6619-A 1opc 30 - 41 <=> 43 - 54 (LEU A 30 - ASP A 41 <=> PRO 179 - ARG 190) 54: 6619-A 1opc 45 - 58 <=> 63 - 76 (GLY A 45 - LYS A 58 <=> ARG 199 - VAL 212) 54: 6619-A 1opc 60 - 65 <=> 86 - 91 (LEU A 60 - ALA A 65 <=> ILE 222 - GLY 227) 54: 6619-A 1opc 69 - 76 <=> 92 - 99 (LYS A 69 - LYS A 76 <=> LEU 228 - ASP 235) 55: 6619-A 1jhg-A 15 - 28 <=> 44 - 57 (LEU A 15 - LYS A 28 <=> LEU A 51 - GLY A 64) 55: 6619-A 1jhg-A 30 - 58 <=> 58 - 86 (LEU A 30 - LYS A 58 <=> GLU A 65 - PRO A 93) 55: 6619-A 1jhg-A 74 - 86 <=> 87 - 99 (THR A 74 - GLU A 86 <=> VAL A 94 - LYS A 106) 56: 6619-A 1pp7-U 11 - 14 <=> 23 - 26 (TYR A 11 - ILE A 14 <=> SER U 27 - PRO U 30) 56: 6619-A 1pp7-U 15 - 28 <=> 28 - 41 (LEU A 15 - LYS A 28 <=> SER U 32 - LEU U 45) 56: 6619-A 1pp7-U 29 - 55 <=> 61 - 87 (ARG A 29 - ILE A 55 <=> PHE U 65 - ALA U 91) 56: 6619-A 1pp7-U 60 - 65 <=> 88 - 93 (LEU A 60 - ALA A 65 <=> PHE U 92 - HIS U 97) 56: 6619-A 1pp7-U 66 - 70 <=> 96 - 100 (PRO A 66 - VAL A 70 <=> GLY U 100 - GLN U 104) 56: 6619-A 1pp7-U 72 - 78 <=> 101 - 107 (PHE A 72 - MET A 78 <=> TRP U 105 - THR U 111) 56: 6619-A 1pp7-U 79 - 82 <=> 109 - 112 (LYS A 79 - GLU A 82 <=> ASN U 113 - PHE U 116) 57: 6619-A 1oyw-A 2 - 5 <=> 381 - 384 (LYS A 2 - LYS A 5 <=> GLN A 394 - CYS A 397) 57: 6619-A 1oyw-A 12 - 27 <=> 397 - 412 (TYR A 12 - LYS A 27 <=> TYR A 410 - ARG A 425) 57: 6619-A 1oyw-A 28 - 32 <=> 414 - 418 (LYS A 28 - SER A 32 <=> ASN A 427 - GLY A 431) 57: 6619-A 1oyw-A 34 - 41 <=> 419 - 426 (ILE A 34 - ASP A 41 <=> GLY A 433 - ARG A 440) 57: 6619-A 1oyw-A 43 - 65 <=> 450 - 472 (SER A 43 - ALA A 65 <=> SER A 465 - ALA A 487) 57: 6619-A 1oyw-A 68 - 83 <=> 474 - 489 (GLY A 68 - GLU A 83 <=> HIS A 489 - GLY A 504) 58: 6619-A 1cez-A 7 - 11 <=> 54 - 58 (MET A 7 - TYR A 11 <=> THR A 75 - PRO A 79) 58: 6619-A 1cez-A 15 - 42 <=> 95 - 122 (LEU A 15 - ILE A 42 <=> TYR A 116 - ARG A 143) 58: 6619-A 1cez-A 43 - 56 <=> 188 - 201 (SER A 43 - ASP A 56 <=> SER A 209 - GLU A 222) 58: 6619-A 1cez-A 57 - 66 <=> 203 - 212 (ASP A 57 - PRO A 66 <=> THR A 224 - ASN A 233) 58: 6619-A 1cez-A 68 - 79 <=> 220 - 231 (GLY A 68 - LYS A 79 <=> SER A 241 - GLU A 252) 58: 6619-A 1cez-A 85 - 89 <=> 240 - 244 (HIS A 85 - LYS A 89 <=> LEU A 261 - SER A 265) 58: 6619-A 1cez-A 90 - 93 <=> 381 - 384 (LYS A 90 - CYS A 93 <=> LEU A 402 - ALA A 405) 59: 6619-A 1p2f-A 3 - 6 <=> 135 - 138 (ILE A 3 - TYR A 6 <=> LEU A 139 - LYS A 142) 59: 6619-A 1p2f-A 12 - 29 <=> 140 - 157 (TYR A 12 - ARG A 29 <=> ILE A 144 - ALA A 161) 59: 6619-A 1p2f-A 30 - 41 <=> 160 - 171 (LEU A 30 - ASP A 41 <=> VAL A 164 - TRP A 175) 59: 6619-A 1p2f-A 43 - 56 <=> 176 - 189 (SER A 43 - ASP A 56 <=> SER A 180 - LYS A 193) 59: 6619-A 1p2f-A 58 - 65 <=> 199 - 206 (LYS A 58 - ALA A 65 <=> ARG A 203 - GLY A 210) 59: 6619-A 1p2f-A 69 - 73 <=> 207 - 211 (LYS A 69 - LEU A 73 <=> VAL A 211 - THR A 216) 60: 6619-A 1ab4 8 - 11 <=> 8 - 11 (ARG A 8 - TYR A 11 <=> VAL 37 - GLY 40) 60: 6619-A 1ab4 14 - 30 <=> 12 - 28 (ILE A 14 - LEU A 30 <=> LEU 41 - ASN 57) 60: 6619-A 1ab4 31 - 41 <=> 35 - 45 (ARG A 31 - ASP A 41 <=> LYS 64 - ILE 74) 60: 6619-A 1ab4 43 - 56 <=> 52 - 65 (SER A 43 - ASP A 56 <=> GLY 81 - GLN 94) 60: 6619-A 1ab4 57 - 64 <=> 71 - 78 (ASP A 57 - GLU A 64 <=> TYR 100 - GLY 107) 60: 6619-A 1ab4 67 - 82 <=> 92 - 107 (ASP A 67 - GLU A 82 <=> ARG 121 - ALA 136) 60: 6619-A 1ab4 89 - 93 <=> 114 - 118 (LYS A 89 - CYS A 93 <=> VAL 143 - ASP 147) 61: 6619-A 2hfh 15 - 25 <=> 9 - 19 (LEU A 15 - LEU A 25 <=> ILE 9 - SER 19) 61: 6619-A 2hfh 27 - 41 <=> 20 - 34 (LYS A 27 - ASP A 41 <=> PRO 20 - SER 34) 61: 6619-A 2hfh 45 - 64 <=> 46 - 65 (GLY A 45 - GLU A 64 <=> ALA 46 - PRO 65) 61: 6619-A 2hfh 66 - 76 <=> 72 - 82 (PRO A 66 - LYS A 76 <=> GLY 72 - GLN 82) 61: 6619-A 2hfh 79 - 83 <=> 84 - 88 (LYS A 79 - GLU A 83 <=> GLU 84 - ASP 88) 62: 6619-A 1p4w-A 7 - 10 <=> 17 - 20 (MET A 7 - ASN A 10 <=> GLY A 145 - ASP A 148) 62: 6619-A 1p4w-A 12 - 28 <=> 21 - 37 (TYR A 12 - LYS A 28 <=> LYS A 149 - GLY A 165) 62: 6619-A 1p4w-A 31 - 56 <=> 38 - 63 (ARG A 31 - ASP A 56 <=> PHE A 166 - MET A 191) 62: 6619-A 1p4w-A 57 - 60 <=> 67 - 70 (ASP A 57 - LEU A 60 <=> VAL A 195 - ASP A 198) 62: 6619-A 1p4w-A 75 - 83 <=> 71 - 79 (GLU A 75 - GLU A 83 <=> ILE A 199 - SER A 207) 62: 6619-A 1p4w-A 86 - 89 <=> 81 - 84 (GLU A 86 - LYS A 89 <=> SER A 209 - PRO A 212) 63: 6619-A 1d3y-A 12 - 15 <=> 1 - 4 (TYR A 12 - LEU A 15 <=> GLN A 72 - ILE A 75) 63: 6619-A 1d3y-A 16 - 29 <=> 6 - 19 (LYS A 16 - ARG A 29 <=> ALA A 77 - LEU A 90) 63: 6619-A 1d3y-A 30 - 41 <=> 24 - 35 (LEU A 30 - ASP A 41 <=> PHE A 95 - LYS A 106) 63: 6619-A 1d3y-A 43 - 57 <=> 44 - 58 (SER A 43 - ASP A 57 <=> ASP A 115 - ALA A 129) 63: 6619-A 1d3y-A 58 - 62 <=> 60 - 64 (LYS A 58 - GLU A 62 <=> GLY A 131 - GLU A 135) 64: 6619-A 1uuk-C 8 - 11 <=> 12 - 15 (ARG A 8 - TYR A 11 <=> ASP C 82 - THR C 85) 64: 6619-A 1uuk-C 14 - 28 <=> 16 - 30 (ILE A 14 - LYS A 28 <=> ASP C 86 - TYR C 100) 64: 6619-A 1uuk-C 29 - 41 <=> 37 - 49 (ARG A 29 - ASP A 41 <=> ILE C 107 - GLY C 119) 64: 6619-A 1uuk-C 43 - 58 <=> 55 - 70 (SER A 43 - LYS A 58 <=> LEU C 125 - LEU C 140) 64: 6619-A 1uuk-C 60 - 65 <=> 96 - 101 (LEU A 60 - ALA A 65 <=> ARG C 166 - LEU C 171) 64: 6619-A 1uuk-C 69 - 76 <=> 102 - 109 (LYS A 69 - LYS A 76 <=> ASP C 172 - ASP C 179) 64: 6619-A 1uuk-C 85 - 93 <=> 135 - 143 (HIS A 85 - CYS A 93 <=> LYS C 205 - THR C 213) 65: 6619-A 1r72-A 15 - 28 <=> 7 - 20 (LEU A 15 - LYS A 28 <=> ILE A 8 - LEU A 21) 65: 6619-A 1r72-A 31 - 56 <=> 28 - 53 (ARG A 31 - ASP A 56 <=> THR A 29 - SER A 54) 65: 6619-A 1r72-A 62 - 65 <=> 55 - 58 (GLU A 62 - ALA A 65 <=> GLY A 56 - GLY A 59) 65: 6619-A 1r72-A 69 - 73 <=> 59 - 63 (LYS A 69 - LEU A 73 <=> VAL A 60 - VAL A 64) 65: 6619-A 1r72-A 75 - 83 <=> 68 - 76 (GLU A 75 - GLU A 83 <=> ARG A 69 - LEU A 77) 65: 6619-A 1r72-A 90 - 93 <=> 183 - 186 (LYS A 90 - CYS A 93 <=> VAL A 184 - VAL A 187) 66: 6619-A 1ail 3 - 11 <=> 2 - 10 (ILE A 3 - TYR A 11 <=> ASP 2 - GLN 10) 66: 6619-A 1ail 19 - 22 <=> 14 - 17 (VAL A 19 - GLY A 22 <=> PHE 14 - HIS 17) 66: 6619-A 1ail 35 - 39 <=> 21 - 25 (LEU A 35 - ASP A 39 <=> GLN 21 - GLN 25) 66: 6619-A 1ail 43 - 58 <=> 32 - 47 (SER A 43 - LYS A 58 <=> PHE 32 - GLY 47) 66: 6619-A 1ail 76 - 93 <=> 53 - 70 (LYS A 76 - CYS A 93 <=> ASN 53 - LYS 70) 67: 6619-A 1sei-A 15 - 26 <=> 6 - 17 (LEU A 15 - GLU A 26 <=> ILE A 6 - ASN A 17) 67: 6619-A 1sei-A 27 - 34 <=> 20 - 27 (LYS A 27 - ILE A 34 <=> ARG A 20 - PRO A 27) 67: 6619-A 1sei-A 44 - 62 <=> 29 - 47 (ASP A 44 - GLU A 62 <=> SER A 29 - ASP A 47) 67: 6619-A 1sei-A 70 - 75 <=> 60 - 65 (VAL A 70 - GLU A 75 <=> ARG A 60 - TYR A 65) 67: 6619-A 1sei-A 79 - 84 <=> 70 - 75 (LYS A 79 - LEU A 84 <=> ARG A 70 - LEU A 75) 68: 6619-A 1rep-C 7 - 10 <=> 13 - 16 (MET A 7 - ASN A 10 <=> ALA C 27 - SER C 30) 68: 6619-A 1rep-C 14 - 28 <=> 17 - 31 (ILE A 14 - LYS A 28 <=> LEU C 31 - GLN C 45) 68: 6619-A 1rep-C 29 - 58 <=> 40 - 69 (ARG A 29 - LYS A 58 <=> CYS C 60 - PHE C 89) 68: 6619-A 1rep-C 61 - 65 <=> 87 - 91 (ARG A 61 - ALA A 65 <=> ALA C 119 - SER C 123) 68: 6619-A 1rep-C 68 - 76 <=> 92 - 100 (GLY A 68 - LYS A 76 <=> ARG C 124 - ASN C 132) 68: 6619-A 1rep-C 85 - 93 <=> 128 - 136 (HIS A 85 - CYS A 93 <=> PRO C 160 - SER C 168) 69: 6619-A 1a8i 3 - 14 <=> 339 - 350 (ILE A 3 - ILE A 14 <=> TRP 361 - CYS 372) 69: 6619-A 1a8i 27 - 39 <=> 361 - 373 (LYS A 27 - ASP A 39 <=> ALA 383 - LEU 395) 69: 6619-A 1a8i 44 - 58 <=> 374 - 388 (ASP A 44 - LYS A 58 <=> LEU 396 - PHE 410) 69: 6619-A 1a8i 61 - 67 <=> 408 - 414 (ARG A 61 - ASP A 67 <=> LEU 430 - VAL 436) 69: 6619-A 1a8i 69 - 74 <=> 415 - 420 (LYS A 69 - THR A 74 <=> LYS 437 - ALA 442) 69: 6619-A 1a8i 77 - 81 <=> 422 - 426 (GLY A 77 - PHE A 81 <=> LEU 444 - GLY 448) 69: 6619-A 1a8i 83 - 86 <=> 427 - 430 (GLU A 83 - GLU A 86 <=> SER 449 - VAL 452) 69: 6619-A 1a8i 90 - 93 <=> 802 - 805 (LYS A 90 - CYS A 93 <=> ILE 824 - VAL 827) 70: 6619-A 1uhw-A 6 - 11 <=> 1 - 6 (TYR A 6 - TYR A 11 <=> GLY A 1 - SER A 6) 70: 6619-A 1uhw-A 17 - 23 <=> 11 - 17 (VAL A 17 - SER A 23 <=> LEU A 11 - ASP A 17) 70: 6619-A 1uhw-A 24 - 28 <=> 21 - 25 (ARG A 24 - LYS A 28 <=> GLY A 21 - LEU A 25) 70: 6619-A 1uhw-A 29 - 41 <=> 36 - 48 (ARG A 29 - ASP A 41 <=> HIS A 36 - VAL A 48) 70: 6619-A 1uhw-A 43 - 64 <=> 55 - 76 (SER A 43 - GLU A 64 <=> ASN A 55 - GLY A 76) 70: 6619-A 1uhw-A 67 - 75 <=> 95 - 103 (ASP A 67 - GLU A 75 <=> PRO A 95 - ASP A 103) 71: 6619-A 1gln 2 - 5 <=> 379 - 382 (LYS A 2 - LYS A 5 <=> VAL 379 - LYS 382) 71: 6619-A 1gln 15 - 28 <=> 391 - 404 (LEU A 15 - LYS A 28 <=> LEU 391 - GLN 404) 71: 6619-A 1gln 30 - 33 <=> 412 - 415 (LEU A 30 - GLU A 33 <=> LEU 412 - LEU 415) 71: 6619-A 1gln 34 - 57 <=> 417 - 440 (ILE A 34 - ASP A 57 <=> ARG 417 - GLY 440) 71: 6619-A 1gln 61 - 64 <=> 450 - 453 (ARG A 61 - GLU A 64 <=> ILE 450 - LEU 453) 71: 6619-A 1gln 74 - 86 <=> 456 - 468 (THR A 74 - GLU A 86 <=> LYS 456 - ALA 468) 72: 6619-A 1awc-A 15 - 25 <=> 1 - 11 (LEU A 15 - LEU A 25 <=> ILE A 320 - LEU A 330) 72: 6619-A 1awc-A 29 - 33 <=> 27 - 31 (ARG A 29 - GLU A 33 <=> GLY A 346 - LEU A 350) 72: 6619-A 1awc-A 36 - 41 <=> 37 - 42 (LYS A 36 - ASP A 41 <=> VAL A 356 - GLY A 361) 72: 6619-A 1awc-A 43 - 66 <=> 51 - 74 (SER A 43 - PRO A 66 <=> ASN A 370 - LYS A 393) 72: 6619-A 1awc-A 68 - 76 <=> 75 - 83 (GLY A 68 - LYS A 76 <=> ARG A 394 - ASP A 402) 73: 6619-A 1o7f-A 1 - 4 <=> 157 - 160 (MET A 1 - ARG A 4 <=> PRO A 181 - LYS A 184) 73: 6619-A 1o7f-A 18 - 24 <=> 166 - 172 (LEU A 18 - ARG A 24 <=> LYS A 190 - ILE A 196) 73: 6619-A 1o7f-A 26 - 29 <=> 177 - 180 (GLU A 26 - ARG A 29 <=> PRO A 201 - ILE A 204) 73: 6619-A 1o7f-A 30 - 41 <=> 193 - 204 (LEU A 30 - ASP A 41 <=> CYS A 217 - ILE A 228) 73: 6619-A 1o7f-A 43 - 64 <=> 212 - 233 (SER A 43 - GLU A 64 <=> SER A 236 - ASP A 257) 73: 6619-A 1o7f-A 67 - 75 <=> 241 - 249 (ASP A 67 - GLU A 75 <=> LYS A 265 - ASP A 273) 73: 6619-A 1o7f-A 83 - 91 <=> 261 - 269 (GLU A 83 - ILE A 91 <=> GLU A 285 - GLU A 293) 74: 6619-A 1akh-A 15 - 29 <=> 3 - 17 (LEU A 15 - ARG A 29 <=> PRO A 79 - GLN A 93) 74: 6619-A 1akh-A 32 - 58 <=> 23 - 49 (SER A 32 - LYS A 58 <=> GLU A 99 - SER A 125) 75: 6619-A 1vde-A 3 - 8 <=> 190 - 195 (ILE A 3 - ARG A 8 <=> LEU A 200 - PRO A 205) 75: 6619-A 1vde-A 16 - 24 <=> 199 - 207 (LYS A 16 - ARG A 24 <=> ALA A 209 - GLY A 217) 75: 6619-A 1vde-A 27 - 34 <=> 212 - 219 (LYS A 27 - ILE A 34 <=> ASP A 222 - ASP A 229) 75: 6619-A 1vde-A 44 - 57 <=> 222 - 235 (ASP A 44 - ASP A 57 <=> ASP A 232 - LYS A 245) 75: 6619-A 1vde-A 58 - 65 <=> 238 - 245 (LYS A 58 - ALA A 65 <=> LEU A 248 - ARG A 255) 75: 6619-A 1vde-A 66 - 76 <=> 249 - 259 (PRO A 66 - LYS A 76 <=> GLN A 259 - LYS A 269) 75: 6619-A 1vde-A 78 - 84 <=> 265 - 271 (MET A 78 - LEU A 84 <=> ASN A 284 - ILE A 290) 75: 6619-A 1vde-A 88 - 93 <=> 284 - 289 (PHE A 88 - CYS A 93 <=> ILE A 303 - SER A 308) 76: 6619-A 1gnd 3 - 6 <=> 105 - 108 (ILE A 3 - TYR A 6 <=> VAL 105 - SER 108) 76: 6619-A 1gnd 12 - 15 <=> 124 - 127 (TYR A 12 - LEU A 15 <=> THR 124 - LEU 127) 76: 6619-A 1gnd 16 - 28 <=> 138 - 150 (LYS A 16 - LYS A 28 <=> ARG 138 - PHE 150) 76: 6619-A 1gnd 32 - 56 <=> 167 - 191 (SER A 32 - ASP A 56 <=> SER 167 - LEU 191) 76: 6619-A 1gnd 67 - 70 <=> 199 - 202 (ASP A 67 - VAL A 70 <=> ASP 199 - CYS 202) 76: 6619-A 1gnd 71 - 74 <=> 205 - 208 (LEU A 71 - THR A 74 <=> THR 205 - ARG 208) 76: 6619-A 1gnd 76 - 80 <=> 211 - 215 (LYS A 76 - GLU A 80 <=> LEU 211 - SER 215) 77: 6619-A 1utg 19 - 23 <=> 7 - 11 (VAL A 19 - SER A 23 <=> ALA 7 - GLU 11) 77: 6619-A 1utg 31 - 42 <=> 19 - 30 (ARG A 31 - ILE A 42 <=> SER 19 - PRO 30) 77: 6619-A 1utg 43 - 58 <=> 34 - 49 (SER A 43 - LYS A 58 <=> MET 34 - PRO 49) 77: 6619-A 1utg 74 - 93 <=> 50 - 69 (THR A 74 - CYS A 93 <=> GLN 50 - CYS 69) 78: 6619-A 1k87-A 8 - 11 <=> 63 - 66 (ARG A 8 - TYR A 11 <=> GLN A 149 - LEU A 152) 78: 6619-A 1k87-A 15 - 28 <=> 76 - 89 (LEU A 15 - LYS A 28 <=> GLY A 162 - ILE A 175) 78: 6619-A 1k87-A 34 - 41 <=> 110 - 117 (ILE A 34 - ASP A 41 <=> PRO A 202 - ALA A 209) 78: 6619-A 1k87-A 43 - 59 <=> 126 - 142 (SER A 43 - ILE A 59 <=> ASN A 224 - GLY A 240) 78: 6619-A 1k87-A 75 - 93 <=> 143 - 161 (GLU A 75 - CYS A 93 <=> GLU A 241 - PHE A 259) 79: 6619-A 1irx-A 1 - 4 <=> 417 - 420 (MET A 1 - ARG A 4 <=> ILE A 433 - LYS A 436) 79: 6619-A 1irx-A 7 - 10 <=> 421 - 424 (MET A 7 - ASN A 10 <=> PRO A 437 - VAL A 440) 79: 6619-A 1irx-A 13 - 29 <=> 425 - 441 (ILE A 13 - ARG A 29 <=> GLU A 441 - LEU A 457) 79: 6619-A 1irx-A 35 - 56 <=> 458 - 479 (LEU A 35 - ASP A 56 <=> GLU A 474 - ILE A 495) 79: 6619-A 1irx-A 61 - 64 <=> 487 - 490 (ARG A 61 - GLU A 64 <=> LEU A 503 - PHE A 506) 79: 6619-A 1irx-A 74 - 82 <=> 496 - 504 (THR A 74 - GLU A 82 <=> ARG A 512 - ARG A 520) 80: 6619-A 1f1z-A 6 - 10 <=> 179 - 183 (TYR A 6 - ASN A 10 <=> GLU A 186 - GLU A 190) 80: 6619-A 1f1z-A 18 - 41 <=> 188 - 211 (LEU A 18 - ASP A 41 <=> LEU A 195 - ASP A 218) 80: 6619-A 1f1z-A 43 - 63 <=> 217 - 237 (SER A 43 - GLU A 63 <=> GLU A 224 - ASN A 244) 80: 6619-A 1f1z-A 64 - 70 <=> 240 - 246 (GLU A 64 - VAL A 70 <=> LYS A 247 - LYS A 253) 80: 6619-A 1f1z-A 71 - 74 <=> 249 - 252 (LEU A 71 - THR A 74 <=> ASP A 256 - ILE A 259) 80: 6619-A 1f1z-A 78 - 81 <=> 253 - 256 (MET A 78 - PHE A 81 <=> SER A 260 - VAL A 263) 81: 6619-A 2ezh 14 - 41 <=> 4 - 31 (ILE A 14 - ASP A 41 <=> ASP 181 - GLU 208) 81: 6619-A 2ezh 45 - 58 <=> 42 - 55 (GLY A 45 - LYS A 58 <=> PRO 219 - ASP 232) 81: 6619-A 2ezh 75 - 80 <=> 56 - 61 (GLU A 75 - GLU A 80 <=> GLU 233 - ALA 238) 82: 6619-A 1v0d-A 3 - 14 <=> 3 - 14 (ILE A 3 - ILE A 14 <=> ASP A 87 - PRO A 98) 82: 6619-A 1v0d-A 16 - 29 <=> 16 - 29 (LYS A 16 - ARG A 29 <=> ALA A 100 - GLU A 113) 82: 6619-A 1v0d-A 73 - 91 <=> 30 - 48 (LEU A 73 - ILE A 91 <=> GLN A 114 - ASN A 132) 83: 6619-A 1tc3-C 14 - 26 <=> 7 - 19 (ILE A 14 - GLU A 26 <=> SER C 208 - LEU C 220) 83: 6619-A 1tc3-C 29 - 57 <=> 20 - 48 (ARG A 29 - ASP A 57 <=> LEU C 221 - TYR C 249) 84: 6619-A 1dq3-A 15 - 23 <=> 139 - 147 (LEU A 15 - SER A 23 <=> ASP A 139 - ALA A 147) 84: 6619-A 1dq3-A 24 - 27 <=> 150 - 153 (ARG A 24 - LYS A 27 <=> GLY A 150 - ASP A 153) 84: 6619-A 1dq3-A 29 - 35 <=> 169 - 175 (ARG A 29 - LEU A 35 <=> LEU A 169 - ARG A 175) 84: 6619-A 1dq3-A 44 - 58 <=> 176 - 190 (ASP A 44 - LYS A 58 <=> ILE A 176 - PHE A 190) 84: 6619-A 1dq3-A 61 - 66 <=> 194 - 199 (ARG A 61 - PRO A 66 <=> TYR A 194 - ASP A 199) 84: 6619-A 1dq3-A 68 - 73 <=> 202 - 207 (GLY A 68 - LEU A 73 <=> ILE A 202 - ILE A 207) 84: 6619-A 1dq3-A 74 - 87 <=> 209 - 222 (THR A 74 - PHE A 87 <=> ALA A 209 - GLY A 222) 84: 6619-A 1dq3-A 89 - 92 <=> 223 - 226 (LYS A 89 - VAL A 92 <=> ILE A 223 - GLY A 226) 85: 6619-A 1b24-A 15 - 24 <=> 5 - 14 (LEU A 15 - ARG A 24 <=> SER A 11 - GLY A 20) 85: 6619-A 1b24-A 25 - 28 <=> 16 - 19 (LEU A 25 - LYS A 28 <=> GLY A 22 - TYR A 25) 85: 6619-A 1b24-A 30 - 35 <=> 33 - 38 (LEU A 30 - LEU A 35 <=> VAL A 39 - SER A 44) 85: 6619-A 1b24-A 44 - 58 <=> 43 - 57 (ASP A 44 - LYS A 58 <=> LYS A 49 - LEU A 63) 85: 6619-A 1b24-A 61 - 73 <=> 64 - 76 (ARG A 61 - LEU A 73 <=> GLN A 70 - VAL A 82) 85: 6619-A 1b24-A 74 - 88 <=> 78 - 92 (THR A 74 - PHE A 88 <=> SER A 84 - ILE A 98) 85: 6619-A 1b24-A 90 - 93 <=> 93 - 96 (LYS A 90 - CYS A 93 <=> ARG A 99 - ASN A 102) 86: 6619-A 1umq-A 5 - 9 <=> 10 - 14 (LYS A 5 - ILE A 9 <=> PRO A 31 - PRO A 35) 86: 6619-A 1umq-A 12 - 15 <=> 15 - 18 (TYR A 12 - LEU A 15 <=> MET A 36 - ASP A 39) 86: 6619-A 1umq-A 16 - 26 <=> 20 - 30 (LYS A 16 - GLU A 26 <=> VAL A 41 - GLU A 51) 86: 6619-A 1umq-A 28 - 56 <=> 31 - 59 (LYS A 28 - ASP A 56 <=> MET A 52 - PRO A 80) 87: 6619-A 1t0x-P 4 - 7 <=> 180 - 183 (ARG A 4 - MET A 7 <=> ASP P 253 - ARG P 256) 87: 6619-A 1t0x-P 11 - 14 <=> 187 - 190 (TYR A 11 - ILE A 14 <=> ILE P 260 - HIS P 263) 87: 6619-A 1t0x-P 15 - 29 <=> 192 - 206 (LEU A 15 - ARG A 29 <=> VAL P 265 - GLN P 279) 87: 6619-A 1t0x-P 30 - 41 <=> 212 - 223 (LEU A 30 - ASP A 41 <=> GLU P 285 - GLY P 296) 87: 6619-A 1t0x-P 42 - 54 <=> 226 - 238 (ILE A 42 - LEU A 54 <=> TRP P 299 - ALA P 311) 87: 6619-A 1t0x-P 56 - 59 <=> 239 - 242 (ASP A 56 - ILE A 59 <=> GLN P 312 - VAL P 315) 88: 6619-A 1ewq-A 3 - 14 <=> 301 - 312 (ILE A 3 - ILE A 14 <=> PRO A 301 - PHE A 312) 88: 6619-A 1ewq-A 15 - 29 <=> 315 - 329 (LEU A 15 - ARG A 29 <=> GLU A 315 - LEU A 329) 88: 6619-A 1ewq-A 30 - 33 <=> 358 - 361 (LEU A 30 - GLU A 33 <=> ILE A 358 - GLU A 361) 88: 6619-A 1ewq-A 50 - 55 <=> 366 - 371 (LEU A 50 - ILE A 55 <=> LEU A 366 - GLY A 371) 88: 6619-A 1ewq-A 60 - 64 <=> 372 - 376 (LEU A 60 - GLU A 64 <=> LEU A 372 - SER A 376) 88: 6619-A 1ewq-A 65 - 68 <=> 379 - 382 (ALA A 65 - GLY A 68 <=> LYS A 379 - LEU A 382) 88: 6619-A 1ewq-A 74 - 93 <=> 520 - 539 (THR A 74 - CYS A 93 <=> ALA A 520 - ARG A 539) 89: 6619-A 1s29-A 15 - 27 <=> 11 - 23 (LEU A 15 - LYS A 27 <=> GLN A 12 - ASP A 24) 89: 6619-A 1s29-A 29 - 39 <=> 41 - 51 (ARG A 29 - ASP A 39 <=> GLY A 43 - PHE A 53) 89: 6619-A 1s29-A 41 - 44 <=> 57 - 60 (ASP A 41 - ASP A 44 <=> VAL A 59 - ASP A 62) 89: 6619-A 1s29-A 45 - 54 <=> 62 - 71 (GLY A 45 - LEU A 54 <=> LYS A 64 - SER A 73) 89: 6619-A 1s29-A 58 - 65 <=> 72 - 79 (LYS A 58 - ALA A 65 <=> GLU A 74 - ASP A 81) 89: 6619-A 1s29-A 69 - 76 <=> 80 - 87 (LYS A 69 - LYS A 76 <=> GLY A 82 - PRO A 90) 90: 6619-A 1qb2-A 3 - 8 <=> 20 - 25 (ILE A 3 - ARG A 8 <=> PHE A 345 - GLY A 350) 90: 6619-A 1qb2-A 11 - 14 <=> 42 - 45 (TYR A 11 - ILE A 14 <=> GLU A 367 - ALA A 370) 90: 6619-A 1qb2-A 15 - 30 <=> 47 - 62 (LEU A 15 - LEU A 30 <=> LEU A 372 - LEU A 387) 90: 6619-A 1qb2-A 32 - 58 <=> 77 - 103 (SER A 32 - LYS A 58 <=> ARG A 402 - ALA A 428) 91: 6619-A 1m12-A 15 - 29 <=> 5 - 19 (LEU A 15 - ARG A 29 <=> CYS A 5 - ILE A 19) 91: 6619-A 1m12-A 32 - 41 <=> 31 - 40 (SER A 32 - ASP A 41 <=> ALA A 31 - PRO A 40) 91: 6619-A 1m12-A 43 - 55 <=> 43 - 55 (SER A 43 - ILE A 55 <=> LEU A 43 - GLY A 55) 91: 6619-A 1m12-A 58 - 61 <=> 56 - 59 (LYS A 58 - ARG A 61 <=> SER A 56 - LEU A 59) 91: 6619-A 1m12-A 76 - 79 <=> 60 - 63 (LYS A 76 - LYS A 79 <=> SER A 60 - LEU A 63) 91: 6619-A 1m12-A 82 - 86 <=> 66 - 70 (GLU A 82 - GLU A 86 <=> VAL A 66 - LEU A 70) 92: 6619-A 1ku2-A 2 - 6 <=> 178 - 182 (LYS A 2 - TYR A 6 <=> ALA A 270 - ARG A 274) 92: 6619-A 1ku2-A 11 - 15 <=> 183 - 187 (TYR A 11 - LEU A 15 <=> ILE A 275 - MET A 279) 92: 6619-A 1ku2-A 16 - 29 <=> 189 - 202 (LYS A 16 - ARG A 29 <=> GLU A 281 - GLN A 294) 92: 6619-A 1ku2-A 30 - 41 <=> 208 - 219 (LEU A 30 - ASP A 41 <=> GLU A 300 - GLY A 311) 92: 6619-A 1ku2-A 42 - 54 <=> 222 - 234 (ILE A 42 - LEU A 54 <=> TRP A 314 - ALA A 326) 92: 6619-A 1ku2-A 59 - 62 <=> 235 - 238 (ILE A 59 - GLU A 62 <=> GLN A 327 - VAL A 330) 93: 6619-A 1jqj-C 1 - 6 <=> 224 - 229 (MET A 1 - TYR A 6 <=> GLY C 224 - ALA C 229) 93: 6619-A 1jqj-C 13 - 16 <=> 250 - 253 (ILE A 13 - LYS A 16 <=> LEU C 250 - GLU C 253) 93: 6619-A 1jqj-C 18 - 26 <=> 254 - 262 (LEU A 18 - GLU A 26 <=> LEU C 254 - ARG C 262) 93: 6619-A 1jqj-C 28 - 43 <=> 264 - 279 (LYS A 28 - SER A 43 <=> SER C 264 - TRP C 279) 93: 6619-A 1jqj-C 46 - 56 <=> 280 - 290 (VAL A 46 - ASP A 56 <=> ARG C 282 - ARG C 292) 93: 6619-A 1jqj-C 77 - 93 <=> 292 - 308 (GLY A 77 - CYS A 93 <=> SER C 294 - LEU C 310) 94: 6619-A 1irz-A 13 - 16 <=> 11 - 14 (ILE A 13 - LYS A 16 <=> THR A 11 - LEU A 14) 94: 6619-A 1irz-A 18 - 30 <=> 15 - 27 (LEU A 18 - LEU A 30 <=> HIS A 15 - VAL A 27) 94: 6619-A 1irz-A 31 - 41 <=> 30 - 40 (ARG A 31 - ASP A 41 <=> ALA A 30 - ASN A 40) 94: 6619-A 1irz-A 42 - 58 <=> 44 - 60 (ILE A 42 - LYS A 58 <=> LEU A 44 - LEU A 60) 95: 6619-A 1h0x-A 15 - 26 <=> 12 - 23 (LEU A 15 - GLU A 26 <=> MET A 20 - ASN A 31) 95: 6619-A 1h0x-A 27 - 34 <=> 25 - 32 (LYS A 27 - ILE A 34 <=> GLY A 33 - LYS A 40) 95: 6619-A 1h0x-A 43 - 56 <=> 37 - 50 (SER A 43 - ASP A 56 <=> ALA A 45 - ASN A 58) 95: 6619-A 1h0x-A 57 - 66 <=> 54 - 63 (ASP A 57 - PRO A 66 <=> PRO A 62 - ARG A 71) 95: 6619-A 1h0x-A 70 - 74 <=> 85 - 89 (VAL A 70 - THR A 74 <=> ALA A 93 - LYS A 97) 96: 6619-A 1bp7-A 6 - 21 <=> 4 - 19 (TYR A 6 - ASN A 21 <=> TYR A 5 - ASP A 20) 96: 6619-A 1bp7-A 25 - 28 <=> 21 - 24 (LEU A 25 - LYS A 28 <=> SER A 22 - ALA A 25) 96: 6619-A 1bp7-A 48 - 57 <=> 51 - 60 (TYR A 48 - ASP A 57 <=> ARG A 52 - GLU A 61) 96: 6619-A 1bp7-A 58 - 68 <=> 62 - 72 (LYS A 58 - GLY A 68 <=> GLY A 63 - VAL A 73) 96: 6619-A 1bp7-A 70 - 75 <=> 74 - 79 (VAL A 70 - GLU A 75 <=> ASP A 75 - GLU A 80) 96: 6619-A 1bp7-A 79 - 89 <=> 85 - 95 (LYS A 79 - LYS A 89 <=> ASN A 86 - LYS A 96) 97: 6619-A 1bgf 8 - 11 <=> 19 - 22 (ARG A 8 - TYR A 11 <=> VAL 18 - PHE 21) 97: 6619-A 1bgf 16 - 20 <=> 29 - 33 (LYS A 16 - ILE A 20 <=> MET 28 - HIS 32) 97: 6619-A 1bgf 24 - 28 <=> 38 - 42 (ARG A 24 - LYS A 28 <=> TRP 37 - GLN 41) 97: 6619-A 1bgf 31 - 40 <=> 63 - 72 (ARG A 31 - ILE A 40 <=> ILE 62 - VAL 71) 97: 6619-A 1bgf 43 - 58 <=> 80 - 95 (SER A 43 - LYS A 58 <=> LEU 79 - PHE 94) 97: 6619-A 1bgf 74 - 93 <=> 99 - 118 (THR A 74 - CYS A 93 <=> PRO 98 - ALA 117) 98: 6619-A 1sf9-A 3 - 12 <=> 7 - 16 (ILE A 3 - TYR A 12 <=> ASN A 17 - GLU A 26) 98: 6619-A 1sf9-A 15 - 29 <=> 27 - 41 (LEU A 15 - ARG A 29 <=> LEU A 37 - ALA A 51) 98: 6619-A 1sf9-A 74 - 93 <=> 46 - 65 (THR A 74 - CYS A 93 <=> ILE A 56 - LEU A 75) 99: 6619-A 1d9c-A 3 - 12 <=> 43 - 52 (ILE A 3 - TYR A 12 <=> LYS A 43 - PHE A 52) 99: 6619-A 1d9c-A 15 - 18 <=> 55 - 58 (LEU A 15 - LEU A 18 <=> LYS A 55 - GLU A 58) 99: 6619-A 1d9c-A 38 - 41 <=> 61 - 64 (PHE A 38 - ASP A 41 <=> LYS A 61 - GLN A 64) 99: 6619-A 1d9c-A 42 - 60 <=> 66 - 84 (ILE A 42 - LEU A 60 <=> ILE A 66 - GLY A 84) 99: 6619-A 1d9c-A 73 - 86 <=> 85 - 98 (LEU A 73 - GLU A 86 <=> SER A 85 - ILE A 98) 99: 6619-A 1d9c-A 90 - 93 <=> 99 - 102 (LYS A 90 - CYS A 93 <=> PRO A 99 - ASP A 102) 100: 6619-A 1c52 13 - 16 <=> 40 - 43 (ILE A 13 - LYS A 16 <=> GLU 40 - ARG 43) 100: 6619-A 1c52 18 - 26 <=> 44 - 52 (LEU A 18 - GLU A 26 <=> GLU 44 - TYR 52) 100: 6619-A 1c52 27 - 30 <=> 69 - 72 (LYS A 27 - LEU A 30 <=> MET 69 - PHE 72) 100: 6619-A 1c52 31 - 41 <=> 75 - 85 (ARG A 31 - ASP A 41 <=> LEU 75 - ASN 85) 100: 6619-A 1c52 42 - 48 <=> 103 - 109 (ILE A 42 - TYR A 48 <=> PHE 103 - LYS 109) 100: 6619-A 1c52 50 - 55 <=> 110 - 115 (LEU A 50 - ILE A 55 <=> LYS 110 - LYS 115) 100: 6619-A 1c52 77 - 87 <=> 117 - 127 (GLY A 77 - PHE A 87 <=> THR 117 - LYS 127) 100: 6619-A 1c52 89 - 92 <=> 128 - 131 (LYS A 89 - VAL A 92 <=> LEU 128 - LYS 131) 101: 6619-A 1abv 8 - 13 <=> 12 - 17 (ARG A 8 - ILE A 13 <=> LYS 12 - PHE 17) 101: 6619-A 1abv 15 - 29 <=> 24 - 38 (LEU A 15 - ARG A 29 <=> VAL 24 - THR 38) 101: 6619-A 1abv 31 - 34 <=> 64 - 67 (ARG A 31 - ILE A 34 <=> CYS 64 - GLN 67) 101: 6619-A 1abv 47 - 58 <=> 69 - 80 (LEU A 47 - LYS A 58 <=> ASP 69 - ALA 80) 101: 6619-A 1abv 74 - 93 <=> 85 - 104 (THR A 74 - CYS A 93 <=> LEU 85 - ALA 104) 102: 6619-A 2irf-G 13 - 16 <=> 1 - 4 (ILE A 13 - LYS A 16 <=> ARG G 5 - MET G 8) 102: 6619-A 2irf-G 18 - 26 <=> 5 - 13 (LEU A 18 - GLU A 26 <=> ARG G 9 - ASN G 17) 102: 6619-A 2irf-G 29 - 32 <=> 29 - 32 (ARG A 29 - SER A 32 <=> ILE G 33 - ILE G 36) 102: 6619-A 2irf-G 38 - 42 <=> 48 - 52 (PHE A 38 - ILE A 42 <=> ALA G 52 - ARG G 56) 102: 6619-A 2irf-G 43 - 54 <=> 73 - 84 (SER A 43 - LEU A 54 <=> TRP G 77 - LEU G 88) 102: 6619-A 2irf-G 58 - 63 <=> 85 - 90 (LYS A 58 - GLU A 63 <=> PRO G 89 - VAL G 94) 102: 6619-A 2irf-G 64 - 67 <=> 93 - 96 (GLU A 64 - ASP A 67 <=> ARG G 97 - LYS G 100) 102: 6619-A 2irf-G 68 - 75 <=> 102 - 109 (GLY A 68 - GLU A 75 <=> PHE G 106 - PRO G 113) 103: 6619-A 2btv-A 1 - 4 <=> 227 - 230 (MET A 1 - ARG A 4 <=> ARG A 283 - ILE A 286) 103: 6619-A 2btv-A 15 - 28 <=> 548 - 561 (LEU A 15 - LYS A 28 <=> ALA A 604 - LEU A 617) 103: 6619-A 2btv-A 29 - 32 <=> 580 - 583 (ARG A 29 - SER A 32 <=> PHE A 636 - ALA A 639) 103: 6619-A 2btv-A 33 - 36 <=> 585 - 588 (GLU A 33 - LYS A 36 <=> LEU A 641 - SER A 644) 103: 6619-A 2btv-A 47 - 58 <=> 589 - 600 (LEU A 47 - LYS A 58 <=> PRO A 645 - HIS A 656) 103: 6619-A 2btv-A 74 - 83 <=> 607 - 616 (THR A 74 - GLU A 83 <=> ILE A 663 - LEU A 672) 103: 6619-A 2btv-A 86 - 89 <=> 617 - 620 (GLU A 86 - LYS A 89 <=> PRO A 673 - GLN A 676) 104: 6619-A 1iba 13 - 18 <=> 1 - 6 (ILE A 13 - LEU A 18 <=> MET 15 - VAL 20) 104: 6619-A 1iba 27 - 34 <=> 22 - 29 (LYS A 27 - ILE A 34 <=> ILE 36 - VAL 43) 104: 6619-A 1iba 43 - 47 <=> 31 - 35 (SER A 43 - LEU A 47 <=> ASP 45 - VAL 49) 104: 6619-A 1iba 50 - 55 <=> 36 - 41 (LEU A 50 - ILE A 55 <=> ASP 50 - LYS 55) 104: 6619-A 1iba 59 - 62 <=> 46 - 49 (ILE A 59 - GLU A 62 <=> ALA 60 - VAL 63) 104: 6619-A 1iba 67 - 76 <=> 53 - 62 (ASP A 67 - LYS A 76 <=> SER 67 - LYS 76) 104: 6619-A 1iba 78 - 93 <=> 63 - 78 (MET A 78 - CYS A 93 <=> SER 77 - GLY 92) 105: 6619-A 1fsh-A 15 - 27 <=> 8 - 20 (LEU A 15 - LYS A 27 <=> SER A 19 - PRO A 31) 105: 6619-A 1fsh-A 31 - 41 <=> 40 - 50 (ARG A 31 - ASP A 41 <=> VAL A 51 - TYR A 61) 105: 6619-A 1fsh-A 43 - 54 <=> 62 - 73 (SER A 43 - LEU A 54 <=> ALA A 73 - GLY A 84) 105: 6619-A 1fsh-A 60 - 64 <=> 75 - 79 (LEU A 60 - GLU A 64 <=> LEU A 86 - VAL A 90) 105: 6619-A 1fsh-A 67 - 74 <=> 87 - 94 (ASP A 67 - THR A 74 <=> GLN A 98 - ASP A 105) 106: 6619-A 1ewa-A 15 - 25 <=> 16 - 26 (LEU A 15 - LEU A 25 <=> TYR A 16 - ASN A 26) 106: 6619-A 1ewa-A 26 - 30 <=> 28 - 32 (GLU A 26 - LEU A 30 <=> TYR A 28 - ARG A 32) 106: 6619-A 1ewa-A 31 - 35 <=> 35 - 39 (ARG A 31 - LEU A 35 <=> PHE A 35 - VAL A 39) 106: 6619-A 1ewa-A 38 - 41 <=> 41 - 44 (PHE A 38 - ASP A 41 <=> LYS A 41 - GLN A 44) 106: 6619-A 1ewa-A 42 - 58 <=> 47 - 63 (ILE A 42 - LYS A 58 <=> LYS A 47 - MET A 63) 106: 6619-A 1ewa-A 75 - 93 <=> 94 - 112 (GLU A 75 - CYS A 93 <=> THR A 94 - GLY A 112) ## MATRICES: UX+T is the least-squares superimposition of STRID2 (X) onto STRID1 NR. STRID1 STRID2 U(.,1) U(.,2) U(.,3) T(.) 1: 6619-A 1jgs-A U(1,.) -0.896343 0.442744 -0.023377 1.804613 1: 6619-A 1jgs-A U(2,.) -0.435873 -0.870331 0.229215 24.770107 1: 6619-A 1jgs-A U(3,.) 0.081138 0.215645 0.973095 -29.413401 2: 6619-A 1s3j-A U(1,.) 0.298130 0.905788 -0.301110 -64.041542 2: 6619-A 1s3j-A U(2,.) -0.203983 0.368626 0.906921 -20.603500 2: 6619-A 1s3j-A U(3,.) 0.932475 -0.208959 0.294664 -37.859489 3: 6619-A 1smt-A U(1,.) -0.528619 0.105626 -0.842262 23.867077 3: 6619-A 1smt-A U(2,.) 0.833137 -0.125526 -0.538634 22.862843 3: 6619-A 1smt-A U(3,.) -0.162619 -0.986451 -0.021646 53.687607 4: 6619-A 1tbx-A U(1,.) 0.579099 0.753205 -0.311972 -85.654137 4: 6619-A 1tbx-A U(2,.) -0.786203 0.414707 -0.458152 59.093891 4: 6619-A 1tbx-A U(3,.) -0.215705 0.510588 0.832328 -36.517342 5: 6619-A 1p4x-A U(1,.) -0.086405 0.112574 -0.989879 -26.597120 5: 6619-A 1p4x-A U(2,.) -0.542453 0.828080 0.141523 -19.053082 5: 6619-A 1p4x-A U(3,.) 0.835631 0.549191 -0.010484 7.027341 6: 6619-A 1lj9-A U(1,.) -0.083029 0.608944 0.788856 -29.705719 6: 6619-A 1lj9-A U(2,.) 0.578015 0.674259 -0.459645 2.548992 6: 6619-A 1lj9-A U(3,.) -0.811791 0.417807 -0.407962 8.729241 7: 6619-A 1r7j-A U(1,.) -0.375509 0.926025 -0.038353 -4.547195 7: 6619-A 1r7j-A U(2,.) -0.304208 -0.162236 -0.938689 14.707108 7: 6619-A 1r7j-A U(3,.) -0.875472 -0.340818 0.342625 35.883141 8: 6619-A 1fnn-A U(1,.) 0.370392 0.785377 0.495976 5.786308 8: 6619-A 1fnn-A U(2,.) 0.011390 -0.537753 0.843026 -24.517393 8: 6619-A 1fnn-A U(3,.) 0.928806 -0.306601 -0.208125 -8.516667 9: 6619-A 1fy7-A U(1,.) -0.997058 -0.032077 -0.069612 81.856415 9: 6619-A 1fy7-A U(2,.) 0.070282 -0.744973 -0.663382 27.673029 9: 6619-A 1fy7-A U(3,.) -0.030579 -0.666323 0.745036 15.470750 10: 6619-A 1fpx-A U(1,.) 0.200561 -0.838087 0.507331 -7.897682 10: 6619-A 1fpx-A U(2,.) -0.073263 0.503573 0.860841 -17.851749 10: 6619-A 1fpx-A U(3,.) -0.976938 -0.209820 0.039597 4.238409 11: 6619-A 1qbj-A U(1,.) 0.828458 -0.492571 -0.266517 13.038147 11: 6619-A 1qbj-A U(2,.) -0.555424 -0.661573 -0.503811 34.115868 11: 6619-A 1qbj-A U(3,.) 0.071842 0.565416 -0.821671 -11.562719 12: 6619-A 1hqc-A U(1,.) 0.418744 0.903937 -0.086905 -67.376877 12: 6619-A 1hqc-A U(2,.) -0.338883 0.066762 -0.938457 211.679428 12: 6619-A 1hqc-A U(3,.) -0.842503 0.422423 0.334285 -37.987259 13: 6619-A 1bi0 U(1,.) -0.021637 -0.892141 0.451239 12.611267 13: 6619-A 1bi0 U(2,.) -0.421723 -0.401080 -0.813194 25.711174 13: 6619-A 1bi0 U(3,.) 0.906467 -0.207893 -0.367558 -2.505147 14: 6619-A 1on1-A U(1,.) 0.715199 0.462203 0.524270 -111.308342 14: 6619-A 1on1-A U(2,.) 0.566706 0.055532 -0.822046 103.540916 14: 6619-A 1on1-A U(3,.) -0.409066 0.885034 -0.222217 8.564783 15: 6619-A 1qzz-A U(1,.) -0.608563 0.691129 -0.389861 -16.135225 15: 6619-A 1qzz-A U(2,.) -0.789096 -0.578823 0.205647 27.506044 15: 6619-A 1qzz-A U(3,.) -0.083532 0.432787 0.897618 -30.868395 16: 6619-A 1bja-A U(1,.) 0.175936 -0.542380 0.821505 -95.084099 16: 6619-A 1bja-A U(2,.) -0.251173 -0.831634 -0.495276 74.871109 16: 6619-A 1bja-A U(3,.) 0.951819 -0.119203 -0.282545 52.393147 17: 6619-A 1lva-A U(1,.) -0.992422 0.122550 0.009010 37.336437 17: 6619-A 1lva-A U(2,.) 0.082718 0.612039 0.786490 7.573018 17: 6619-A 1lva-A U(3,.) 0.090870 0.781275 -0.617537 23.498365 18: 6619-A 1ldd-A U(1,.) -0.133373 0.720023 0.681013 -51.688110 18: 6619-A 1ldd-A U(2,.) 0.830120 -0.294216 0.473644 -42.002361 18: 6619-A 1ldd-A U(3,.) 0.541399 0.628494 -0.558465 -32.579327 19: 6619-A 1okr-A U(1,.) -0.370956 0.222131 0.901692 -40.317467 19: 6619-A 1okr-A U(2,.) 0.720585 -0.543633 0.430372 1.629618 19: 6619-A 1okr-A U(3,.) 0.585789 0.809395 0.041600 -30.876684 20: 6619-A 1mzb-A U(1,.) -0.056322 -0.994031 -0.093434 27.861477 20: 6619-A 1mzb-A U(2,.) -0.505797 -0.052278 0.861067 -20.159941 20: 6619-A 1mzb-A U(3,.) -0.860812 0.095755 -0.499834 41.642460 21: 6619-A 1jmr-A U(1,.) 0.651861 0.355377 0.669914 -60.048447 21: 6619-A 1jmr-A U(2,.) 0.377466 -0.918239 0.119814 -44.389999 21: 6619-A 1jmr-A U(3,.) 0.657720 0.174768 -0.732708 39.873814 22: 6619-A 1ecl U(1,.) 0.049018 0.997827 -0.044033 -23.606783 22: 6619-A 1ecl U(2,.) -0.329766 0.057782 0.942293 -9.853078 22: 6619-A 1ecl U(3,.) 0.942789 -0.031668 0.331882 -63.706657 23: 6619-A 1ldj-A U(1,.) 0.525754 0.731608 0.433972 -45.501442 23: 6619-A 1ldj-A U(2,.) -0.835359 0.347809 0.425681 96.879562 23: 6619-A 1ldj-A U(3,.) 0.160492 -0.586326 0.794018 -8.759174 24: 6619-A 1iz1-A U(1,.) 0.327298 -0.901230 0.284008 17.434288 24: 6619-A 1iz1-A U(2,.) 0.305276 -0.183594 -0.934398 -1.272811 24: 6619-A 1iz1-A U(3,.) 0.894250 0.392527 0.215033 -42.750237 25: 6619-A 1ft9-A U(1,.) -0.304835 0.942929 -0.134018 16.672762 25: 6619-A 1ft9-A U(2,.) 0.603630 0.300125 0.738618 -50.497345 25: 6619-A 1ft9-A U(3,.) 0.736686 0.144259 -0.660668 -51.999550 26: 6619-A 1dpu-A U(1,.) -0.553442 -0.606533 -0.570806 3.132866 26: 6619-A 1dpu-A U(2,.) -0.808932 0.228255 0.541783 2.642443 26: 6619-A 1dpu-A U(3,.) -0.198320 0.761589 -0.616969 -6.207923 27: 6619-A 2fok-A U(1,.) 0.761392 -0.307050 -0.570966 76.208450 27: 6619-A 2fok-A U(2,.) -0.485922 0.312703 -0.816148 114.528259 27: 6619-A 2fok-A U(3,.) 0.429141 0.898853 0.088887 -107.763573 28: 6619-A 1ucr-A U(1,.) -0.267099 0.184135 0.945913 14.878183 28: 6619-A 1ucr-A U(2,.) -0.887569 -0.429319 -0.167052 -15.602259 28: 6619-A 1ucr-A U(3,.) 0.375338 -0.884183 0.278103 -7.120639 29: 6619-A 1gku-B U(1,.) -0.383384 0.535166 0.752737 -92.446327 29: 6619-A 1gku-B U(2,.) 0.918396 0.307201 0.249350 14.733082 29: 6619-A 1gku-B U(3,.) -0.097798 0.786908 -0.609271 98.452682 30: 6619-A 1oyi-A U(1,.) 0.258700 -0.743597 -0.616553 6.107811 30: 6619-A 1oyi-A U(2,.) -0.925400 -0.373798 0.062532 -1.361531 30: 6619-A 1oyi-A U(3,.) -0.276965 0.554381 -0.784826 -4.462542 31: 6619-A 1sey-A U(1,.) -0.372568 -0.711911 0.595295 -18.934986 31: 6619-A 1sey-A U(2,.) -0.245306 -0.543110 -0.803029 -11.179533 31: 6619-A 1sey-A U(3,.) 0.894996 -0.445212 0.027710 40.221142 32: 6619-A 1ku9-A U(1,.) -0.186121 0.210859 -0.959634 19.794725 32: 6619-A 1ku9-A U(2,.) -0.218358 0.943397 0.249642 -8.154194 32: 6619-A 1ku9-A U(3,.) 0.957955 0.256008 -0.129543 -16.322737 33: 6619-A 1hst-A U(1,.) -0.223003 -0.801562 0.554768 20.168917 33: 6619-A 1hst-A U(2,.) 0.050112 -0.577773 -0.814658 -3.930037 33: 6619-A 1hst-A U(3,.) 0.973529 -0.153870 0.169013 -13.515285 34: 6619-A 1p41-A U(1,.) -0.617391 0.767654 0.171858 -12.242464 34: 6619-A 1p41-A U(2,.) 0.041926 0.250266 -0.967269 -5.994675 34: 6619-A 1p41-A U(3,.) -0.785538 -0.589978 -0.186696 74.057007 35: 6619-A 1b9m-A U(1,.) -0.213287 -0.433333 -0.875632 17.782513 35: 6619-A 1b9m-A U(2,.) -0.442023 -0.756478 0.482034 4.282400 35: 6619-A 1b9m-A U(3,.) -0.871277 0.489861 -0.030196 31.729544 36: 6619-A 1bm9-A U(1,.) 0.112424 -0.718491 -0.686390 21.303921 36: 6619-A 1bm9-A U(2,.) -0.105681 -0.695497 0.710715 2.044423 36: 6619-A 1bm9-A U(3,.) -0.988024 -0.007364 -0.154121 44.596863 37: 6619-A 1bia U(1,.) -0.157846 -0.710836 -0.685417 144.737823 37: 6619-A 1bia U(2,.) -0.258801 -0.640075 0.723413 40.460270 37: 6619-A 1bia U(3,.) -0.952946 0.291574 -0.082932 77.386818 38: 6619-A 1cf7-B U(1,.) -0.947001 0.238116 -0.215613 36.382256 38: 6619-A 1cf7-B U(2,.) 0.071939 -0.496958 -0.864788 40.634037 38: 6619-A 1cf7-B U(3,.) -0.313070 -0.834466 0.453490 23.759342 39: 6619-A 1iuy-A U(1,.) 0.159151 0.617841 -0.770028 -5.947998 39: 6619-A 1iuy-A U(2,.) -0.018892 -0.777921 -0.628078 -7.633012 39: 6619-A 1iuy-A U(3,.) -0.987074 0.114507 -0.112134 -4.726932 40: 6619-A 1fpq-A U(1,.) -0.650639 0.757065 -0.059346 43.128803 40: 6619-A 1fpq-A U(2,.) -0.755815 -0.638026 0.147195 29.539732 40: 6619-A 1fpq-A U(3,.) 0.073572 0.140625 0.987326 -17.844128 41: 6619-A 1d6m-A U(1,.) 0.173899 0.878336 -0.445292 -83.043419 41: 6619-A 1d6m-A U(2,.) 0.726088 -0.419830 -0.544555 -51.317844 41: 6619-A 1d6m-A U(3,.) -0.665249 -0.228623 -0.710757 128.242188 42: 6619-A 2cgp-A U(1,.) 0.114114 -0.572917 -0.811631 26.603636 42: 6619-A 2cgp-A U(2,.) 0.791877 -0.440887 0.422551 21.631014 42: 6619-A 2cgp-A U(3,.) -0.599924 -0.690931 0.403368 -5.925978 43: 6619-A 1lea U(1,.) 0.814141 -0.523508 -0.251223 4.939134 43: 6619-A 1lea U(2,.) -0.523115 -0.849043 0.074005 -1.519649 43: 6619-A 1lea U(3,.) -0.252041 0.071168 -0.965096 -3.136757 44: 6619-A 1kgs-A U(1,.) -0.013971 -0.706924 0.707151 -21.673803 44: 6619-A 1kgs-A U(2,.) -0.995801 0.073829 0.054132 12.814538 44: 6619-A 1kgs-A U(3,.) -0.090475 -0.703425 -0.704987 84.717865 45: 6619-A 1e2x-A U(1,.) 0.982020 0.088058 0.166980 -24.604324 45: 6619-A 1e2x-A U(2,.) -0.188380 0.399832 0.897021 -15.285329 45: 6619-A 1e2x-A U(3,.) 0.012226 -0.912349 0.409232 12.190188 46: 6619-A 2bby U(1,.) -0.999375 -0.032556 0.013783 3.024516 46: 6619-A 2bby U(2,.) 0.000235 -0.395996 -0.918252 -0.501737 46: 6619-A 2bby U(3,.) 0.035352 -0.917675 0.395756 0.226652 47: 6619-A 1i1g-A U(1,.) 0.165112 -0.983329 0.076169 -15.198181 47: 6619-A 1i1g-A U(2,.) -0.282028 -0.121078 -0.951735 -22.292263 47: 6619-A 1i1g-A U(3,.) 0.945092 0.135661 -0.297318 30.955036 48: 6619-A 1hkq-A U(1,.) -0.081741 0.383873 0.919761 -27.425716 48: 6619-A 1hkq-A U(2,.) 0.648686 0.721113 -0.243315 -19.606882 48: 6619-A 1hkq-A U(3,.) -0.756654 0.576747 -0.307958 11.919333 49: 6619-A 1ufm-A U(1,.) -0.826548 -0.502768 -0.253065 11.209496 49: 6619-A 1ufm-A U(2,.) -0.260589 0.740323 -0.619689 -2.646512 49: 6619-A 1ufm-A U(3,.) 0.498910 -0.446257 -0.742929 -3.128944 50: 6619-A 1omi-A U(1,.) -0.491538 0.393363 0.776953 -41.261093 50: 6619-A 1omi-A U(2,.) -0.413400 0.679843 -0.605734 1.512148 50: 6619-A 1omi-A U(3,.) -0.766480 -0.618933 -0.171553 79.714989 51: 6619-A 1d8j-A U(1,.) 0.561113 -0.808224 0.178677 3.872578 51: 6619-A 1d8j-A U(2,.) 0.777432 0.440479 -0.448974 -0.394796 51: 6619-A 1d8j-A U(3,.) 0.284168 0.390835 0.875498 -2.928536 52: 6619-A 1b4a-A U(1,.) 0.926072 0.291580 -0.239526 -12.728588 52: 6619-A 1b4a-A U(2,.) -0.368208 0.837111 -0.404559 -22.537968 52: 6619-A 1b4a-A U(3,.) 0.082548 0.462846 0.882587 -17.893579 53: 6619-A 1fse-A U(1,.) -0.704128 0.109407 -0.701594 58.077103 53: 6619-A 1fse-A U(2,.) 0.709148 0.057924 -0.702677 -37.080414 53: 6619-A 1fse-A U(3,.) -0.036239 -0.992308 -0.118371 18.127533 54: 6619-A 1opc U(1,.) -0.342822 -0.937557 0.058816 40.634106 54: 6619-A 1opc U(2,.) -0.931483 0.331154 -0.150588 -0.565390 54: 6619-A 1opc U(3,.) 0.121708 -0.106411 -0.986845 17.311640 55: 6619-A 1jhg-A U(1,.) 0.755807 0.316577 -0.573179 -3.759251 55: 6619-A 1jhg-A U(2,.) 0.369455 0.516532 0.772462 11.052434 55: 6619-A 1jhg-A U(3,.) 0.540609 -0.795596 0.273438 11.026869 56: 6619-A 1pp7-U U(1,.) 0.070798 -0.948094 0.310010 6.148311 56: 6619-A 1pp7-U U(2,.) 0.703444 -0.172893 -0.689402 2.132108 56: 6619-A 1pp7-U U(3,.) 0.707216 0.266883 0.654690 -31.589619 57: 6619-A 1oyw-A U(1,.) 0.994237 -0.060296 -0.088638 -8.436033 57: 6619-A 1oyw-A U(2,.) 0.072686 -0.228598 0.970804 -16.732700 57: 6619-A 1oyw-A U(3,.) -0.078798 -0.971652 -0.222898 27.799601 58: 6619-A 1cez-A U(1,.) 0.327876 -0.042392 -0.943769 -17.209545 58: 6619-A 1cez-A U(2,.) 0.640345 -0.724521 0.255007 -37.742298 58: 6619-A 1cez-A U(3,.) -0.694590 -0.687948 -0.210407 68.251747 59: 6619-A 1p2f-A U(1,.) -0.173405 0.893282 0.414702 -49.303093 59: 6619-A 1p2f-A U(2,.) 0.179174 -0.385440 0.905170 -40.453896 59: 6619-A 1p2f-A U(3,.) 0.968415 0.231265 -0.093215 -26.075956 60: 6619-A 1ab4 U(1,.) 0.886713 0.176988 -0.427101 -47.216763 60: 6619-A 1ab4 U(2,.) -0.446756 0.090334 -0.890084 56.238621 60: 6619-A 1ab4 U(3,.) -0.118953 0.980059 0.159171 -71.845520 61: 6619-A 2hfh U(1,.) 0.314506 0.176195 0.932760 -9.457147 61: 6619-A 2hfh U(2,.) -0.949099 0.040514 0.312363 19.167183 61: 6619-A 2hfh U(3,.) 0.017247 -0.983521 0.179968 -12.602248 62: 6619-A 1p4w-A U(1,.) 0.910904 -0.293087 -0.290439 -14.660444 62: 6619-A 1p4w-A U(2,.) -0.333773 -0.109546 -0.936267 -35.073925 62: 6619-A 1p4w-A U(3,.) 0.242591 0.949789 -0.197610 -0.508968 63: 6619-A 1d3y-A U(1,.) 0.616136 0.100912 0.781148 -3.676981 63: 6619-A 1d3y-A U(2,.) 0.022672 0.989076 -0.145656 -13.373394 63: 6619-A 1d3y-A U(3,.) -0.787313 0.107454 0.607117 -23.725965 64: 6619-A 1uuk-C U(1,.) -0.610153 0.193578 0.768271 -38.337925 64: 6619-A 1uuk-C U(2,.) -0.357961 -0.932432 -0.049348 46.138443 64: 6619-A 1uuk-C U(3,.) 0.706808 -0.305121 0.638219 -22.962950 65: 6619-A 1r72-A U(1,.) -0.217051 -0.587665 -0.779448 75.636261 65: 6619-A 1r72-A U(2,.) 0.086253 -0.806906 0.584348 53.241562 65: 6619-A 1r72-A U(3,.) -0.972342 0.059603 0.225828 15.005512 66: 6619-A 1ail U(1,.) -0.168265 -0.897022 -0.408703 35.257225 66: 6619-A 1ail U(2,.) -0.917150 -0.009492 0.398429 8.629108 66: 6619-A 1ail U(3,.) -0.361279 0.441884 -0.821107 31.056162 67: 6619-A 1sei-A U(1,.) 0.215009 -0.442141 0.870794 3.244072 67: 6619-A 1sei-A U(2,.) 0.799203 -0.432800 -0.417084 10.400183 67: 6619-A 1sei-A U(3,.) 0.561290 0.785618 0.260304 -36.501339 68: 6619-A 1rep-C U(1,.) -0.581561 0.175228 0.794407 -38.834557 68: 6619-A 1rep-C U(2,.) -0.353555 -0.933921 -0.052825 46.473396 68: 6619-A 1rep-C U(3,.) 0.732657 -0.311587 0.605085 -21.496798 69: 6619-A 1a8i U(1,.) 0.945633 0.315085 -0.080621 -47.048782 69: 6619-A 1a8i U(2,.) 0.236572 -0.496266 0.835317 -35.735779 69: 6619-A 1a8i U(3,.) 0.223186 -0.808976 -0.543826 21.862320 70: 6619-A 1uhw-A U(1,.) 0.288764 -0.929885 0.227881 0.798909 70: 6619-A 1uhw-A U(2,.) 0.280079 0.309655 0.908664 4.785290 70: 6619-A 1uhw-A U(3,.) -0.915517 -0.198565 0.349858 -4.239503 71: 6619-A 1gln U(1,.) 0.779287 0.565098 0.270881 35.951572 71: 6619-A 1gln U(2,.) -0.617523 0.618891 0.485427 17.556379 71: 6619-A 1gln U(3,.) 0.106668 -0.545562 0.831255 51.710232 72: 6619-A 1awc-A U(1,.) 0.445198 0.856567 0.260943 -58.477139 72: 6619-A 1awc-A U(2,.) 0.872918 -0.480104 0.086686 -51.106110 72: 6619-A 1awc-A U(3,.) 0.199532 0.189189 -0.961454 39.566257 73: 6619-A 1o7f-A U(1,.) -0.618320 0.544329 0.566910 -4.851575 73: 6619-A 1o7f-A U(2,.) 0.650762 -0.049853 0.757644 -10.159332 73: 6619-A 1o7f-A U(3,.) 0.440670 0.837389 -0.323403 3.914667 74: 6619-A 1akh-A U(1,.) 0.834996 0.542430 0.092473 -39.120872 74: 6619-A 1akh-A U(2,.) -0.297223 0.586041 -0.753800 -8.888977 74: 6619-A 1akh-A U(3,.) -0.463076 0.601935 0.650564 -27.250998 75: 6619-A 1vde-A U(1,.) -0.479360 0.558264 0.677168 -24.689430 75: 6619-A 1vde-A U(2,.) -0.876170 -0.348732 -0.332733 63.543064 75: 6619-A 1vde-A U(3,.) 0.050397 -0.752813 0.656303 -16.935381 76: 6619-A 1gnd U(1,.) 0.703560 0.491702 -0.513061 49.855236 76: 6619-A 1gnd U(2,.) 0.661395 -0.189008 0.725832 -47.136604 76: 6619-A 1gnd U(3,.) 0.259921 -0.850003 -0.458188 37.248707 77: 6619-A 1utg U(1,.) 0.281770 -0.941033 -0.187251 12.611489 77: 6619-A 1utg U(2,.) -0.018758 -0.200524 0.979509 -26.767195 77: 6619-A 1utg U(3,.) -0.959299 -0.272484 -0.074154 32.558262 78: 6619-A 1k87-A U(1,.) 0.371806 -0.196292 -0.907320 31.836584 78: 6619-A 1k87-A U(2,.) -0.248498 0.920674 -0.301011 -44.379150 78: 6619-A 1k87-A U(3,.) 0.894432 0.337385 0.293534 -40.347130 79: 6619-A 1irx-A U(1,.) 0.118533 0.063787 0.990899 -27.422783 79: 6619-A 1irx-A U(2,.) 0.791692 -0.608391 -0.055540 -2.740307 79: 6619-A 1irx-A U(3,.) 0.599312 0.791070 -0.122614 -51.851517 80: 6619-A 1f1z-A U(1,.) -0.527342 0.520473 0.671579 25.552168 80: 6619-A 1f1z-A U(2,.) -0.812868 -0.078992 -0.577067 4.978062 80: 6619-A 1f1z-A U(3,.) -0.247298 -0.850217 0.464731 11.030444 81: 6619-A 2ezh U(1,.) -0.310979 -0.252026 0.916392 2.040745 81: 6619-A 2ezh U(2,.) 0.930843 0.113910 0.347211 0.257466 81: 6619-A 2ezh U(3,.) -0.191893 0.960993 0.199173 -1.875850 82: 6619-A 1v0d-A U(1,.) -0.037673 0.809335 -0.586138 -14.855146 82: 6619-A 1v0d-A U(2,.) -0.392139 -0.551479 -0.736273 83.529953 82: 6619-A 1v0d-A U(3,.) -0.919134 0.202109 0.338148 66.560295 83: 6619-A 1tc3-C U(1,.) 0.418820 0.364966 0.831499 -73.360649 83: 6619-A 1tc3-C U(2,.) -0.488793 -0.681096 0.545152 88.667526 83: 6619-A 1tc3-C U(3,.) 0.765292 -0.634751 -0.106864 69.729416 84: 6619-A 1dq3-A U(1,.) -0.447740 -0.373372 -0.812479 28.055969 84: 6619-A 1dq3-A U(2,.) 0.583289 -0.810656 0.051096 7.363318 84: 6619-A 1dq3-A U(3,.) -0.677719 -0.451033 0.580747 0.241889 85: 6619-A 1b24-A U(1,.) 0.762195 0.079182 -0.642486 -15.423725 85: 6619-A 1b24-A U(2,.) 0.626437 -0.340433 0.701200 -21.098740 85: 6619-A 1b24-A U(3,.) -0.163201 -0.936929 -0.309079 19.456219 86: 6619-A 1umq-A U(1,.) -0.501839 0.674172 -0.541894 1.347614 86: 6619-A 1umq-A U(2,.) 0.154204 0.686191 0.710889 2.407436 86: 6619-A 1umq-A U(3,.) 0.851104 0.273190 -0.448318 0.279262 87: 6619-A 1t0x-P U(1,.) -0.544065 -0.794633 -0.269355 106.220116 87: 6619-A 1t0x-P U(2,.) 0.834180 -0.477766 -0.275470 -117.760864 87: 6619-A 1t0x-P U(3,.) 0.090209 -0.374564 0.922802 -33.980194 88: 6619-A 1ewq-A U(1,.) 0.777282 0.307120 -0.549099 -51.995056 88: 6619-A 1ewq-A U(2,.) -0.131450 -0.774224 -0.619111 91.611862 88: 6619-A 1ewq-A U(3,.) -0.615267 0.553403 -0.561419 97.080620 89: 6619-A 1s29-A U(1,.) -0.997761 0.044151 0.050234 10.178121 89: 6619-A 1s29-A U(2,.) 0.003899 0.788244 -0.615350 -4.988834 89: 6619-A 1s29-A U(3,.) -0.066765 -0.613777 -0.786652 18.171892 90: 6619-A 1qb2-A U(1,.) -0.071606 -0.706270 -0.704312 43.859978 90: 6619-A 1qb2-A U(2,.) 0.996509 -0.020266 -0.080991 -1.000564 90: 6619-A 1qb2-A U(3,.) 0.042928 -0.707652 0.705256 13.295239 91: 6619-A 1m12-A U(1,.) -0.836203 -0.333924 -0.435041 1.470995 91: 6619-A 1m12-A U(2,.) -0.138616 0.896194 -0.421453 0.287945 91: 6619-A 1m12-A U(3,.) 0.530614 -0.292116 -0.795687 0.451694 92: 6619-A 1ku2-A U(1,.) -0.691213 0.381049 0.614024 -16.012640 92: 6619-A 1ku2-A U(2,.) 0.266330 -0.655549 0.706629 -8.595658 92: 6619-A 1ku2-A U(3,.) 0.671783 0.651964 0.351639 -52.579311 93: 6619-A 1jqj-C U(1,.) -0.530893 0.152901 0.833531 -31.318808 93: 6619-A 1jqj-C U(2,.) -0.475371 0.760531 -0.442284 72.177345 93: 6619-A 1jqj-C U(3,.) -0.701552 -0.631042 -0.331076 126.799347 94: 6619-A 1irz-A U(1,.) -0.983796 0.063984 0.167485 2.179525 94: 6619-A 1irz-A U(2,.) 0.162561 0.712358 0.682730 3.445042 94: 6619-A 1irz-A U(3,.) -0.075626 0.698893 -0.711217 -3.074428 95: 6619-A 1h0x-A U(1,.) -0.085444 0.458785 -0.884430 9.483068 95: 6619-A 1h0x-A U(2,.) 0.720639 0.641442 0.263119 -41.165710 95: 6619-A 1h0x-A U(3,.) 0.688025 -0.614872 -0.385426 29.565590 96: 6619-A 1bp7-A U(1,.) 0.248758 0.957416 0.146542 -74.288292 96: 6619-A 1bp7-A U(2,.) 0.922271 -0.187925 -0.337788 51.137817 96: 6619-A 1bp7-A U(3,.) -0.295865 0.219178 -0.929744 132.339523 97: 6619-A 1bgf U(1,.) 0.890752 -0.260113 -0.372696 16.504387 97: 6619-A 1bgf U(2,.) -0.190663 0.530520 -0.825952 15.416296 97: 6619-A 1bgf U(3,.) 0.412564 0.806778 0.422967 -66.576820 98: 6619-A 1sf9-A U(1,.) 0.911252 -0.014959 -0.411578 -8.240711 98: 6619-A 1sf9-A U(2,.) -0.030492 -0.999048 -0.031199 4.092669 98: 6619-A 1sf9-A U(3,.) -0.410720 0.040980 -0.910840 20.899927 99: 6619-A 1d9c-A U(1,.) 0.558906 -0.013802 -0.829116 5.571995 99: 6619-A 1d9c-A U(2,.) -0.774182 -0.366913 -0.515768 82.014870 99: 6619-A 1d9c-A U(3,.) -0.297095 0.930153 -0.215755 35.233330 100: 6619-A 1c52 U(1,.) 0.651179 -0.006131 0.758900 -40.740345 100: 6619-A 1c52 U(2,.) 0.619701 0.581549 -0.527040 -22.182209 100: 6619-A 1c52 U(3,.) -0.438106 0.813489 0.382491 -39.770195 101: 6619-A 1abv U(1,.) -0.852540 0.011399 0.522538 4.519643 101: 6619-A 1abv U(2,.) 0.446167 -0.504863 0.738951 -2.023168 101: 6619-A 1abv U(3,.) 0.272234 0.863124 0.425330 2.982934 102: 6619-A 2irf-G U(1,.) -0.558941 0.301604 -0.772412 55.001152 102: 6619-A 2irf-G U(2,.) 0.686814 -0.353551 -0.635050 72.976349 102: 6619-A 2irf-G U(3,.) -0.464620 -0.885459 -0.009532 115.291161 103: 6619-A 2btv-A U(1,.) -0.662496 0.720851 0.203646 110.177757 103: 6619-A 2btv-A U(2,.) -0.650016 -0.688350 0.321952 79.001244 103: 6619-A 2btv-A U(3,.) 0.372260 0.080919 0.924594 -324.994690 104: 6619-A 1iba U(1,.) 0.851673 -0.512656 -0.108797 2.890986 104: 6619-A 1iba U(2,.) 0.510501 0.764600 0.393416 -1.051775 104: 6619-A 1iba U(3,.) -0.118501 -0.390602 0.912900 -2.008844 105: 6619-A 1fsh-A U(1,.) 0.022086 -0.931278 0.363638 1.031751 105: 6619-A 1fsh-A U(2,.) 0.533543 -0.296622 -0.792053 -0.072530 105: 6619-A 1fsh-A U(3,.) 0.845485 0.211510 0.490325 -7.615191 106: 6619-A 1ewa-A U(1,.) -0.596719 -0.746252 0.295017 36.334187 106: 6619-A 1ewa-A U(2,.) 0.781962 -0.458213 0.422583 -23.890985 106: 6619-A 1ewa-A U(3,.) -0.180173 0.482855 0.856965 -8.953781 ## FOOTER References: L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. Parameters elastic similarity score, threshold 0.20; sequential alignment The following notation is used for data columns: STRID1/STRID2 PDB identifiers of search structure and aligned structure with chain identifier Z Z-score, i.e., strength of structural similarity in standard deviations above expexted. The matched structures are sorted by Z-score. Only matches above a threshold of Z=2 are reported. RMSD positional root mean square deviation of superimposed CA atoms in Angstroms LALI total number of equivalenced residues LSEQ2 length of the entire chain of the equivalenced structure %IDE percentage of sequence identity over equivalenced positions REVERS number of fragments matching in reversed chain direction PERMUT number of topological permutations (loop reconnections between query and matched structure) NFRAG total number of equivalenced fragments TOPO 'S' sequential connectivity of equivalenced fragments 'N' non-sequential alignment PROTEIN COMPND record from the PDB file of the aligned structure SeqNo, PDBNo, AA, STRUCTURE, BP1, BP2, ACC sequential and PDB residue numbers, amino acid (lower case = Cys),secondary structure, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637, 1983). The alignments block shows the amino acid sequence and DSSP code (in lower case) of the equivalenced fragments. OCC number of equivalences spanning this position STRID1 <=> STRID2 sequential residue numbers of equivalenced fragments (PDB residue numbers in parentheses); any topological permutations and matches in reverse chain direction are flagged e-mail Holm@ebi.ac.uk (Internet) anonymous ftp ftp://ftp.ebi.ac.uk/pub/databases/fssp WWW URL http://www.ebi.ac.uk/dali/fssp/ Availability: Under the terms of the GNU Library General Public License. // Tue Aug 10 18:53:59 PDT 2004 Kevin Karplus It looks like our top prediction was pretty much taken from 1jgsA, which was one of our templates, so I'm going to add the template list to MANUAL_TOP_HITS and resubmit. Wed Aug 11 13:44:08 PDT 2004 Kevin Karplus The VAST server is working again, and it sees 1lj9A as the top hit. In any case, it is clear that the predictions were template based. Sun Sep 19 08:31:32 PDT 2004 Kevin Karplus I was going to use T0243 as an initial test case for evaluating our predictions given the correct answer. The CASP6 web site, http://predictioncenter.llnl.gov/casp6/targets/cgi/casp6-view.cgi?loc=predictioncenter.llnl.gov;page=casp6/ does not give a PDB code yet for T0243, though they do give the PDB ids for 19 other taregets, but Sol says the solution has been published as 1tbxA, though I don't find that with BLAST. Indeed, 1tbxA does not appear to be any of the casp6 sequences. Hmm, I'll query Sol and find out where the problem is---in the meantime, I'll choose a different target to be my initial test case for evaluating predictions. From karplus@soe.ucsc.edu Sun Sep 19 08:48:56 2004 Date: Sun, 19 Sep 2004 08:48:54 -0700 From: Kevin Karplus To: sol@soe.ucsc.edu CC: karplus@soe.ucsc.edu Subject: T0243? 1tbx? Sol, you said "I would be willing to talk about my favorite STIV target T0243. The solution has now been published as 1tbx -- I think we did surprisingly well." But T0243 and 1tbxA seem to have nothing to do with each other. T0243 does not seem to have a released PDB structure, and 1tbxA does not seem to be the sequence of any of the casp6 targets. Neither of the STIV proteins (242 and 243) seem to be published in PDB yet. Could you double-check your notes and make sure you have targets to discuss? From katzman@ieee.org Sun Sep 19 19:22:20 2004 MIME-Version: 1.0 X-Sender: solkatzman@sbcglobal.net@pop.sbcglobal.yahoo.com Date: Sun, 19 Sep 2004 19:16:19 -0700 To: Kevin Karplus From: Sol Katzman Subject: Re: T0243? 1tbx? In-Reply-To: <200409191548.i8JFms1K011321@cheep.cse.ucsc.edu> X-Spam-Checker-Version: SpamAssassin 2.64 (2004-01-11) on coyote.cse.ucsc.edu X-Spam-Level: X-Spam-Status: No, hits=-100.0 required=3.0 tests=USER_IN_WHITELIST autolearn=no version=2.64 Dear Kevin, Ouch! I think I did a search at PDB for "sulfolobus virus F93" or so, and got the hit on 1tbx. I downloaded it, and it looked something like our solution to T0243 so I hastily dashed off my response to you about the presentation. I will see about an alternative -- or keep looking to see if they publish the solution to T0243, which was originally planned for Sept 1, if I recall. /Sol. At 08:48 AM 9/19/2004 -0700, you wrote: >Sol, you said >"I would be willing to talk about my favorite STIV target T0243. The solution >has now been published as 1tbx -- I think we did surprisingly well." > >But T0243 and 1tbxA seem to have nothing to do with each other. T0243 >does not seem to have a released PDB structure, and 1tbxA does not >seem to be the sequence of any of the casp6 targets. Neither of the >STIV proteins (242 and 243) seem to be published in PDB yet. > >Could you double-check your notes and make sure you have targets to discuss? Wed Sep 29 11:38:43 PDT 2004 Kevin Karplus Started a VAST search from model1. Job id: VS62584 Password: T0243model1 Wed Sep 29 15:59:14 PDT 2004 Kevin Karplus Our closest matches in VAST to model1 are to 1lj9A, 1cf7A, 1lnwA, 1jgsA, 1ft9A, ... 1tbxA did not appear in the VAST list of structural similarities. Looking at the MMDB site, 1tbxA is not considered similar to anything but 1tbxB, so it may be that the similarities that Sol is seeing are outside the range of what VAST detects. 1tbxA was added to the template library 24 July 2004, slightly after we did our fold-recognition runs, so it may be that 1tbxA would now be found, but I don't want to change the search results that we did here. Thu Nov 18 23:41:28 PST 2004 Martina Koeva Based on the smooth gdt scores: best sam-t04 56.8965 (try2-opt1) best submit 51.0918 (model4) model1 51.0910 auto 41.9681 align 43.5427 robetta best 31.0340 (robetta model10) robetta1 27.3464