CreatePredAlphaCost pred_alpha2k alpha11 T0242.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0242.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.4 \
	hbond_geom_beta_pair 1

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

HelixConstraint S11	K16
HelixConstraint E29	K35
HelixConstraint E41	I49
HelixConstraint H51	G63
HelixConstraint S97	Q107


SheetConstraint A81 I86	I110 V115	hbond I83	10
SheetConstraint R70 N76  M85  D79	hbond L82	8

StrandConstraint	V4	T7	1
StrandConstraint	T21	I24	1
StrandConstraint	R70	M75	1
StrandConstraint	E80	I86	1
StrandConstraint	I110	V115	1