# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1f6bA	198	3.42e+00		c.37.1.8	64986
3rabA	169	5.12e+00	1ctqA	c.37.1.8	32018
1g0uG	252	5.14e+00		d.153.1.4	41952
1rypA	243	5.76e+00	1pmaA	d.153.1.4	41932
1dgmA	363	1.02e+01	1bx4A	c.72.1.1	34936
1f7tA	122	1.17e+01	1f7lA	d.150.1.2	59667
1liiA	363	1.29e+01		c.72.1.1	73921
1ireA	204	1.35e+01		d.149.1.1	76769
1ugpA	203	1.35e+01			
1hyeA	313	1.46e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
1gs5A	258	1.47e+01		c.73.1.2	70395
1f7lA	121	1.49e+01	1f7lA	d.150.1.2	59666
1n3yA	198	1.51e+01		c.62.1.1	79976
1ky3A	182	2.13e+01		c.37.1.8	73193
1gwiA	411	2.17e+01		a.104.1.1	76364
1te5A	257	2.30e+01			
1fts	295	2.34e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1bywA	110	2.52e+01	1bywA	d.110.3.6	40912
1gz6A	319	2.82e+01		c.2.1.2	76410
1ukkA	142	3.27e+01		d.227.1.1	-11206
1vh7A	265	3.28e+01		c.1.2.1	-5159
1uqrA	154	3.34e+01		c.23.13.1	-6455
1j6wA	175	3.47e+01	1j98A	d.185.1.2	62663
1m46A	148	3.53e+01		a.39.1.5	78599
1jnuA	104	3.57e+01		d.110.3.6	71762
1vkmA	297	3.61e+01			
1tadA	324	3.67e+01	1cipA	a.66.1.1	18194
				c.37.1.8	32077
1b5pA	385	3.72e+01		c.67.1.1	-8133
1m45A	148	3.74e+01		a.39.1.5	78598
1thfD	253	3.89e+01	1thfD	c.1.2.1	28535