# List of top-scoring protein chains for t2k-100-30-str2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1bywA	110	6.24e+00	1bywA	d.110.3.6	40912
1f7lA	121	6.65e+00	1f7lA	d.150.1.2	59666
1f7tA	122	6.88e+00	1f7lA	d.150.1.2	59667
1o0wA	252	1.12e+01		a.149.1.1	80751
				d.50.1.1	80752
1fxlA	167	1.15e+01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1kgdA	180	1.19e+01		c.37.1.1	68582
1l2mA	118	1.23e+01		d.89.1.4	77657
1j6wA	175	1.31e+01	1j98A	d.185.1.2	62663
1gwiA	411	1.57e+01		a.104.1.1	76364
1iow	306	1.64e+01	1iow	c.30.1.2	31713
				d.142.1.1	41481
1q5yA	85	1.76e+01		unknown_sccs	-10081
1qcsA	211	1.76e+01	1qcsA	b.52.2.3	26927
				d.31.1.1	38461
1fs7A	485	1.81e+01	1qdbA	a.138.1.3	19691
2dln	306	1.92e+01	1iow	c.30.1.2	31715
				d.142.1.1	41483
1hyeA	313	1.97e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
1jnuA	104	2.32e+01		d.110.3.6	71762
1lci	550	2.47e+01	1lci	e.23.1.1	43349
1o1zA	234	2.70e+01		c.1.18.3	86555
1qxhA	167	2.81e+01		c.47.1.10	-7496
1g2yA	32	2.89e+01		unknown_sccs	17003
1mxgA	435	2.94e+01		b.71.1.1	85193
				c.1.8.1	85194
1ap8	213	2.94e+01	1ap8	d.86.1.1	40151
1rypD	241	3.17e+01	1rypD	d.153.1.4	41935
1yge	839	3.24e+01	1yge	a.119.1.1	19234
				b.12.1.1	23634
1b88A	114	3.37e+01	1tcrA	b.1.1.1	20608
1uisA	231	3.44e+01		d.22.1.1	-9450
1fgqA	839	3.52e+01	1yge	a.119.1.1	59826
				b.12.1.1	59827
1f8nA	839	3.55e+01	1yge	a.119.1.1	59703
				b.12.1.1	59704
1vjnA	220	3.76e+01		unknown_sccs	-11458
1kn0A	212	3.87e+01		d.50.1.3	77444
1jvwA	167	3.95e+01		d.26.1.1	71907