# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1dgmA	363	1.77e+00	1bx4A	c.72.1.1	34936
1liiA	363	2.86e+00		c.72.1.1	73921
1n3yA	198	4.08e+00		c.62.1.1	79976
1fs7A	485	5.05e+00	1qdbA	a.138.1.3	19691
1rypA	243	9.83e+00	1pmaA	d.153.1.4	41932
1fxlA	167	1.06e+01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
3rabA	169	1.09e+01	1ctqA	c.37.1.8	32018
1hyeA	313	1.22e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
1vkmA	297	1.57e+01			
1bjwA	382	1.60e+01	1bjwA	c.67.1.1	34349
1ir6A	424	1.61e+01		c.107.1.2	71342
1unnC	115	1.66e+01		unknown_sccs	-10216
1uu1A	335	1.66e+01		c.67.1.1	-8146
1f7tA	122	1.75e+01	1f7lA	d.150.1.2	59667
1gwiA	411	1.77e+01		a.104.1.1	76364
1g0uI	205	1.94e+01		d.153.1.4	41891
1te5A	257	2.03e+01			
1jnuA	104	2.07e+01		d.110.3.6	71762
1g0uG	252	2.10e+01		d.153.1.4	41952
1ireA	204	2.12e+01		d.149.1.1	76769
1ugpA	203	2.14e+01			
1f7lA	121	2.14e+01	1f7lA	d.150.1.2	59666
1qxhA	167	2.16e+01		c.47.1.10	-7496
1rypJ	204	2.20e+01		d.153.1.4	41878
1gs5A	258	2.25e+01		c.73.1.2	70395
1f6bA	198	2.27e+01		c.37.1.8	64986
1lci	550	2.36e+01	1lci	e.23.1.1	43349
1g2yA	32	2.40e+01		unknown_sccs	17003
1gmwA	143	2.41e+01		b.107.1.1	65347
				d.58.38.1	65348
1gz6A	319	2.45e+01		c.2.1.2	76410
1id0A	152	2.61e+01		d.122.1.3	66111
1gmuA	143	2.61e+01		b.107.1.1	65335
				d.58.38.1	65336
1fts	295	2.62e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1b5pA	385	2.72e+01		c.67.1.1	-8133
1lsuA	147	2.73e+01		c.2.1.9	74250
1p9rA	418	2.90e+01		c.37.1.11	-7142
1ky3A	182	3.09e+01		c.37.1.8	73193
1b9wA	89	3.11e+01	1b9wA	g.3.11.4	44334
				g.3.11.4	44335
1reqA	727	3.26e+01	1reqA	c.1.19.1	29620
				c.23.6.1	31247
1ohmA	44	3.38e+01		unknown_sccs	-13298
1jm6A	407	3.39e+01		a.29.5.1	66876
				d.122.1.4	66877
7reqA	727	3.53e+01	1reqA	c.1.19.1	29616
				c.23.6.1	31243
1o8xA	146	3.59e+01		c.47.1.10	86681
5reqA	727	3.59e+01	1reqA	c.1.19.1	29632
				c.23.6.1	31259
1q53A	112	3.68e+01		d.58.4.4	-9944
1m45A	148	3.82e+01		a.39.1.5	78598