# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fs7A 485 1.98e+00 1qdbA a.138.1.3 19691 1n3yA 198 2.63e+00 c.62.1.1 79976 1dgmA 363 3.30e+00 1bx4A c.72.1.1 34936 1liiA 363 5.11e+00 c.72.1.1 73921 1uu1A 335 5.17e+00 c.67.1.1 -8146 1g0uG 252 5.46e+00 d.153.1.4 41952 1f7tA 122 6.56e+00 1f7lA d.150.1.2 59667 1bjwA 382 7.70e+00 1bjwA c.67.1.1 34349 1j6wA 175 8.03e+00 1j98A d.185.1.2 62663 1hyeA 313 9.04e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1kgdA 180 9.97e+00 c.37.1.1 68582 1rypA 243 1.03e+01 1pmaA d.153.1.4 41932 1b5pA 385 1.12e+01 c.67.1.1 -8133 1f7lA 121 1.15e+01 1f7lA d.150.1.2 59666 1f6bA 198 1.34e+01 c.37.1.8 64986 1gs5A 258 1.41e+01 c.73.1.2 70395 3rabA 169 1.48e+01 1ctqA c.37.1.8 32018 1lci 550 1.63e+01 1lci e.23.1.1 43349 9apiA 347 1.76e+01 1ovaA e.1.1.1 42630 1gwiA 411 1.81e+01 a.104.1.1 76364 1unnC 115 1.90e+01 unknown_sccs -10216 1yge 839 1.95e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1g2yA 32 2.17e+01 unknown_sccs 17003 1fgqA 839 2.24e+01 1yge a.119.1.1 59826 b.12.1.1 59827 1bywA 110 2.25e+01 1bywA d.110.3.6 40912 1f8nA 839 2.26e+01 1yge a.119.1.1 59703 b.12.1.1 59704 1jj2O 148 2.33e+01 1ffkM a.94.1.1 63100 1q53A 112 2.54e+01 d.58.4.4 -9944 1qxhA 167 2.64e+01 c.47.1.10 -7496 1s72P 149 2.70e+01 1gmwA 143 2.73e+01 b.107.1.1 65347 d.58.38.1 65348 1fxlA 167 2.76e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1iow 306 2.77e+01 1iow c.30.1.2 31713 d.142.1.1 41481 1ffkM 148 2.80e+01 1ffkM a.94.1.1 18740 1gmuA 143 2.83e+01 b.107.1.1 65335 d.58.38.1 65336 1h9mA 145 2.83e+01 1h9jA b.40.6.2 60833 b.40.6.2 60834 1o0wA 252 2.87e+01 a.149.1.1 80751 d.50.1.1 80752 1rypJ 204 2.88e+01 d.153.1.4 41878 1ky3A 182 2.96e+01 c.37.1.8 73193 1jnuA 104 2.98e+01 d.110.3.6 71762 1h9jA 145 3.04e+01 1h9jA b.40.6.2 60829 b.40.6.2 60830 1g0uI 205 3.06e+01 d.153.1.4 41891 1j5pA 253 3.13e+01 c.2.1.3 83092 d.81.1.3 71577 1ir6A 424 3.15e+01 c.107.1.2 71342 1om1A 332 3.16e+01 d.144.1.7 -11318 1lp4A 332 3.16e+01 d.144.1.7 74170 2dln 306 3.18e+01 1iow c.30.1.2 31715 d.142.1.1 41483 1b93B 152 3.20e+01 1b93A c.24.1.2 31508 1fm0E 150 3.26e+01 1fmaE d.41.5.1 38629 1je0A 236 3.32e+01 c.56.2.1 66581 1fmaE 150 3.42e+01 1fmaE d.41.5.1 38630 1kq3A 376 3.49e+01 e.22.1.2 68790 1b93A 152 3.49e+01 1b93A c.24.1.2 31507 1f93E 32 3.51e+01 1f93E unknown_sccs 17013 1ojqA 212 3.75e+01 d.166.1.1 -11568 1og6A 298 3.76e+01 c.1.7.1 86984 1m2rA 327 3.77e+01 d.144.1.7 84760 1lpuA 332 3.79e+01 d.144.1.7 74177 1mrzA 293 3.83e+01 b.43.5.1 -4048 c.26.1.3 -6616 1pmnA 364 3.88e+01 d.144.1.7 -11297 1juvA 193 3.92e+01 c.71.1.1 -8363 1qlpA 394 3.95e+01 1ovaA e.1.1.1 42628