# List of top-scoring protein chains for t2k-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1uu1A	335	1.60e+00		c.67.1.1	-8146
1n3yA	198	2.30e+00		c.62.1.1	79976
1b9wA	89	4.69e+00	1b9wA	g.3.11.4	44334
				g.3.11.4	44335
1izcA	339	5.41e+00		c.1.12.5	83838
1gmuA	143	6.35e+00		b.107.1.1	65335
				d.58.38.1	65336
1gmwA	143	7.77e+00		b.107.1.1	65347
				d.58.38.1	65348
1k8hA	133	8.87e+00		b.111.1.1	72176
1ir6A	424	1.39e+01		c.107.1.2	71342
1gwiA	411	1.43e+01		a.104.1.1	76364
1b93A	152	1.54e+01	1b93A	c.24.1.2	31507
1g0uG	252	1.59e+01		d.153.1.4	41952
1b93B	152	1.65e+01	1b93A	c.24.1.2	31508
1bjwA	382	1.65e+01	1bjwA	c.67.1.1	34349
1n57A	291	1.77e+01		c.23.16.2	85328
1b7bA	310	1.77e+01	1b7bA	c.73.1.1	34963
1g6aA	271	1.81e+01	1btl	e.3.1.1	42704
1rypA	243	1.82e+01	1pmaA	d.153.1.4	41932
1fts	295	1.93e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1f7dA	136	1.96e+01	1dun	b.85.4.1	28353
1h9jA	145	2.05e+01	1h9jA	b.40.6.2	60829
				b.40.6.2	60830
1dgnA	89	2.06e+01	1dgnA	a.77.1.3	18436
1b5pA	385	2.08e+01		c.67.1.1	-8133
1j6wA	175	2.15e+01	1j98A	d.185.1.2	62663
1iw7C	1119	2.24e+01		e.29.1.1	71474
1kgdA	180	2.35e+01		c.37.1.1	68582
1cg2A	393	2.47e+01	1cg2A	c.56.5.4	33844
				d.58.19.1	39360
1pd21	199	2.48e+01	1pd21		
1g6hA	257	2.53e+01	1gajA	c.37.1.12	60318
1gs5A	258	2.56e+01		c.73.1.2	70395
1jbkA	195	2.85e+01		c.37.1.20	71631
1liiA	363	3.05e+01		c.72.1.1	73921
1fs7A	485	3.17e+01	1qdbA	a.138.1.3	19691
1jvwA	167	3.28e+01		d.26.1.1	71907
3grs	478	3.33e+01	3grs	c.3.1.5	30441
				c.3.1.5	30442
				d.87.1.1	40152
1dgmA	363	3.41e+01	1bx4A	c.72.1.1	34936
1h9mA	145	3.44e+01	1h9jA	b.40.6.2	60833
				b.40.6.2	60834
1jwiA	131	3.49e+01		d.169.1.1	67383
1iyhA	198	3.55e+01		a.45.1.1	83790
				c.47.1.5	83791
1o0wA	252	3.57e+01		a.149.1.1	80751
				d.50.1.1	80752
1ky3A	182	3.59e+01		c.37.1.8	73193
1f3aA	222	3.63e+01	1pgtA	a.45.1.1	17701
				c.47.1.5	32995
1reqA	727	3.72e+01	1reqA	c.1.19.1	29620
				c.23.6.1	31247
1jj2O	148	3.78e+01	1ffkM	a.94.1.1	63100
1s72P	149	3.85e+01			
1kq3A	376	3.95e+01		e.22.1.2	68790
4gr1	478	3.98e+01	3grs	c.3.1.5	30461
				c.3.1.5	30462
				d.87.1.1	40162