# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n3yA 198 1.48e+00 c.62.1.1 79976 1uu1A 335 1.55e+00 c.67.1.1 -8146 1vkmA 297 2.71e+00 1dgmA 363 4.46e+00 1bx4A c.72.1.1 34936 1sjyA 159 4.57e+00 d.113.1.1 -10908 1hyeA 313 4.95e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1bjwA 382 5.10e+00 1bjwA c.67.1.1 34349 1liiA 363 5.17e+00 c.72.1.1 73921 1b5pA 385 5.71e+00 c.67.1.1 -8133 1p9rA 418 6.51e+00 c.37.1.11 -7142 1fxlA 167 7.17e+00 1b7fA d.58.7.1 39183 d.58.7.1 39184 1izcA 339 7.31e+00 c.1.12.5 83838 1fts 295 7.37e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1k8hA 133 8.03e+00 b.111.1.1 72176 3rabA 169 9.12e+00 1ctqA c.37.1.8 32018 1nslA 184 1.15e+01 d.108.1.1 86137 1pmnA 364 1.18e+01 d.144.1.7 -11297 1fyvA 161 1.30e+01 1fyvA c.23.2.1 31127 1g0uG 252 1.46e+01 d.153.1.4 41952 1rypA 243 1.53e+01 1pmaA d.153.1.4 41932 1ky3A 182 1.55e+01 c.37.1.8 73193 1guzA 310 1.63e+01 c.2.1.5 65586 d.162.1.1 65587 1j6wA 175 1.64e+01 1j98A d.185.1.2 62663 1o0wA 252 1.68e+01 a.149.1.1 80751 d.50.1.1 80752 1ev0A 58 1.82e+01 1ev0A d.71.1.1 39594 1gwiA 411 1.82e+01 a.104.1.1 76364 1esmA 316 1.93e+01 1esmA c.37.1.6 31953 1kw4A 89 1.93e+01 a.60.1.2 73077 1mrzA 293 1.99e+01 b.43.5.1 -4048 c.26.1.3 -6616 1kgdA 180 2.00e+01 c.37.1.1 68582 2cevA 299 2.05e+01 1d3vA c.42.1.1 32576 1q5yA 85 2.06e+01 unknown_sccs -10081 1b4vA 504 2.11e+01 1b8sA c.3.1.2 30334 d.16.1.1 37865 1reqA 727 2.12e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1f3aA 222 2.14e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1ap8 213 2.15e+01 1ap8 d.86.1.1 40151 1lci 550 2.24e+01 1lci e.23.1.1 43349 3cln 148 2.27e+01 1cll a.39.1.5 17286 1f7lA 121 2.37e+01 1f7lA d.150.1.2 59666 1kf6A 602 2.46e+01 a.7.3.1 72394 c.3.1.4 72395 d.168.1.1 72396 1b8sA 504 2.46e+01 1b8sA c.3.1.2 30335 d.16.1.1 37866 1j1yA 136 2.50e+01 d.38.1.5 -9671 1uqrA 154 2.60e+01 c.23.13.1 -6455 1gmuA 143 2.62e+01 b.107.1.1 65335 d.58.38.1 65336 1dgnA 89 2.63e+01 1dgnA a.77.1.3 18436 1ggzA 148 2.72e+01 a.39.1.5 70176 1pbtA 244 2.75e+01 unknown_sccs -6866 1b93A 152 2.81e+01 1b93A c.24.1.2 31507 1qlyA 58 2.84e+01 1bbzA b.34.2.1 24530 1pyoA 167 2.94e+01 c.17.1.1 -7932 5reqA 727 2.95e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1f7tA 122 3.01e+01 1f7lA d.150.1.2 59667 1bywA 110 3.01e+01 1bywA d.110.3.6 40912 1uisA 231 3.05e+01 d.22.1.1 -9450 1cll 148 3.09e+01 1cll a.39.1.5 17263 1b93B 152 3.16e+01 1b93A c.24.1.2 31508 1q7lB 88 3.18e+01 1d2sA 170 3.23e+01 1d2sA b.29.1.4 24221 1gmwA 143 3.33e+01 b.107.1.1 65347 d.58.38.1 65348 1kdkA 177 3.39e+01 b.29.1.4 72351 1g2yA 32 3.43e+01 unknown_sccs 17003 1jvwA 167 3.44e+01 d.26.1.1 71907 1egpB 25 3.55e+01 1kq3A 376 3.62e+01 e.22.1.2 68790 1s7jA 262 3.72e+01 d.21.1.2 -9424 1te5A 257 3.83e+01 1r13A 148 3.87e+01 d.169.1.1 -11646 h.1.1.1 -12895 6rxn 46 3.87e+01 1rb9 g.41.5.1 45222 1id0A 152 3.93e+01 d.122.1.3 66111 1ea0A 1479 3.94e+01 b.80.4.1 64854 c.1.4.1 64855 d.153.1.1 64856