# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1n3yA	198	4.63e-01		c.62.1.1	79976
1fxlA	167	2.09e+00	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1jobA	162	2.44e+00	1f35A	b.94.1.1	63207
1f35A	162	2.80e+00	1f35A	b.94.1.1	59628
2mbr	340	3.19e+00	2mbr	d.145.1.2	41749
				d.146.1.1	41762
1uxy	340	3.23e+00	2mbr	d.145.1.2	41748
				d.146.1.1	41761
3rabA	169	4.28e+00	1ctqA	c.37.1.8	32018
1g2yA	32	5.52e+00		unknown_sccs	17003
1pbtA	244	8.30e+00		unknown_sccs	-6866
1gca	309	8.95e+00	1gca	c.93.1.1	35659
1sjyA	159	9.77e+00		d.113.1.1	-10908
2gbp	309	1.11e+01	1gca	c.93.1.1	35657
1f7lA	121	1.31e+01	1f7lA	d.150.1.2	59666
1hqcA	324	1.38e+01	1hqcA	a.4.5.11	16127
				c.37.1.20	32424
1f7tA	122	1.48e+01	1f7lA	d.150.1.2	59667
1rqpA	299	1.55e+01		unknown_sccs	-4411
				unknown_sccs	-7908
1trb	320	1.61e+01	1trb	c.3.1.5	30529
				c.3.1.5	30530
1f93E	32	1.78e+01	1f93E	unknown_sccs	17013
1vh4A	435	1.81e+01		unknown_sccs	-4794
5ukdA	194	2.06e+01	1zin	c.37.1.1	31851
1id0A	152	2.23e+01		d.122.1.3	66111
1cseI	71	2.34e+01	1egpA	d.40.1.1	38559
1qf9A	194	2.42e+01	1zin	c.37.1.1	31848
1b63A	333	2.58e+01	1b63A	d.14.1.3	37566
				d.122.1.2	41107
1in4A	334	2.60e+01	1hqcA	a.4.5.11	62597
				c.37.1.20	62598
1uqrA	154	2.95e+01		c.23.13.1	-6455
1ohmA	44	2.98e+01		unknown_sccs	-13298
1nslA	184	3.05e+01		d.108.1.1	86137
2dpmA	284	3.35e+01	2dpmA	c.66.1.28	34246
1pvyA	227	3.41e+01		d.115.1.2	-10937
1ag6	99	3.51e+01	1plc	b.6.1.1	22857
1vjuA	309	3.64e+01		unknown_sccs	-9594
1jm6A	407	3.68e+01		a.29.5.1	66876
				d.122.1.4	66877
1jyoA	130	3.85e+01		d.198.1.1	67483