# List of top-scoring protein chains for T0242.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ixrC 312 1.60e-01 a.4.5.11 76930 c.37.1.20 76931 1hqcA 324 1.61e-01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1ixsB 318 1.61e-01 a.4.5.11 76933 c.37.1.20 76934 1gmiA 136 3.62e-01 b.7.1.1 65309 1q7lB 88 9.63e-01 1in6A 334 1.11e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 1in5A 334 1.19e+00 1hqcA a.4.5.11 62599 c.37.1.20 62600 1in7A 334 1.26e+00 1hqcA a.4.5.11 62603 c.37.1.20 62604 1in8A 334 1.28e+00 1hqcA a.4.5.11 62605 c.37.1.20 62606 1j7kA 334 1.31e+00 1hqcA a.4.5.11 62695 c.37.1.20 62696 1in4A 334 1.31e+00 1hqcA a.4.5.11 62597 c.37.1.20 62598 1lajA 217 3.18e+00 b.121.4.5 77865 1ry2A 663 3.28e+00 e.23.1.1 -12011 1uqrA 154 3.51e+00 c.23.13.1 -6455 1pbtA 244 3.82e+00 unknown_sccs -6866 1sjyA 159 3.92e+00 d.113.1.1 -10908 1nlnA 204 4.42e+00 d.3.1.7 -8897 1dgmA 363 4.54e+00 1bx4A c.72.1.1 34936 1fts 295 4.88e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1e6yC 247 5.82e+00 1mroC d.58.31.1 39441 1okiA 210 6.19e+00 b.11.1.1 -3030 b.11.1.1 -3031 1b89A 449 6.25e+00 1b89A a.118.1.3 19138 1otrB 76 6.83e+00 d.15.1.1 87414 1pmaA 233 7.02e+00 1pmaA d.153.1.4 41918 1fxlA 167 7.08e+00 1b7fA d.58.7.1 39183 d.58.7.1 39184 1qdmA 478 7.57e+00 1smrA a.64.1.2 18141 b.50.1.2 26838 1cmxB 75 8.19e+00 1ubi d.15.1.1 37595 1lioA 363 8.26e+00 c.72.1.1 73924 1p3qU 76 8.29e+00 d.15.1.1 87750 1liiA 363 8.36e+00 c.72.1.1 73921 1ud7A 76 8.43e+00 1ubi d.15.1.1 37593 1qleB 252 8.98e+00 2occB b.6.1.2 23038 f.17.2.1 43621 1ohmA 44 9.69e+00 unknown_sccs -13298 1g6hA 257 9.74e+00 1gajA c.37.1.12 60318 1gajA 257 1.01e+01 1gajA c.37.1.12 60416 1b8sA 504 1.02e+01 1b8sA c.3.1.2 30335 d.16.1.1 37866 1n4wA 504 1.02e+01 c.3.1.2 -5991 d.16.1.1 -9209 1cc2A 504 1.02e+01 1b8sA c.3.1.2 30337 d.16.1.1 37868 1s1iU 126 1.03e+01 1ijhA 504 1.04e+01 c.3.1.2 66161 d.16.1.1 66162 1g9xA 257 1.05e+01 c.37.1.12 76219 1cboA 504 1.09e+01 1b8sA c.3.1.2 30336 d.16.1.1 37867 1urhA 280 1.14e+01 c.46.1.2 -7370 c.46.1.2 -7371 1go7P 462 1.22e+01 unknown_sccs 76245 d.92.1.6 76246 1gmwD 143 1.22e+01 b.107.1.1 65353 d.58.38.1 65354 1go8P 462 1.23e+01 unknown_sccs 76247 d.92.1.6 76248 1k7qA 479 1.25e+01 unknown_sccs 77283 d.92.1.6 77284 1k7gA 479 1.26e+01 unknown_sccs 77279 d.92.1.6 77280 1k7iA 479 1.27e+01 unknown_sccs 77281 d.92.1.6 77282 1vioA 243 1.40e+01 unknown_sccs -10154 d.66.1.5 -10240 1kriA 186 1.48e+01 b.29.1.14 72897 1ar1B 298 1.63e+01 2occB b.6.1.2 23037 f.17.2.1 43619 1c3tA 76 1.63e+01 1ubi d.15.1.1 37594 1k2yX 463 1.65e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1gmuA 143 1.67e+01 b.107.1.1 65335 d.58.38.1 65336 1h1dA 221 1.80e+01 c.66.1.1 83452 1kqrA 179 1.81e+01 b.29.1.14 72886 1gnwA 211 1.84e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1ud1A 476 1.86e+01 b.82.1.2 -4858 b.82.1.2 -4859 1ucxA 476 1.86e+01 b.82.1.2 -4852 b.82.1.2 -4853 1fxzA 476 1.88e+01 b.82.1.2 65059 b.82.1.2 65060 1ghtA 105 1.90e+01 2rslA c.53.1.1 60526 1rypA 243 1.91e+01 1pmaA d.153.1.4 41932 1dppA 507 1.93e+01 1dpe c.94.1.1 35800 1g0uG 252 1.98e+01 d.153.1.4 41952 1jwiA 131 2.00e+01 d.169.1.1 67383 1kw4A 89 2.03e+01 a.60.1.2 73077 1dpe 507 2.06e+01 1dpe c.94.1.1 35799 1p5dX 463 2.13e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1p2fA 220 2.19e+01 a.4.6.1 87720 c.23.1.1 87721 1g68A 271 2.27e+01 1btl e.3.1.1 42705 1g6aA 271 2.28e+01 1btl e.3.1.1 42704 1abrB 267 2.40e+01 1abrB b.42.2.1 25563 b.42.2.1 25564 6rxn 46 2.40e+01 1rb9 g.41.5.1 45222 1og7A 43 2.47e+01 unknown_sccs -13299 1kb9A 431 2.48e+01 d.185.1.1 77311 d.185.1.1 77312 1ezvA 430 2.49e+01 1be3A d.185.1.1 59541 d.185.1.1 59542 1sdoA 203 2.58e+01 unknown_sccs -7558 1uu1A 335 2.59e+01 c.67.1.1 -8146 1p98A 78 2.73e+01 d.15.1.1 -9131 1gwiA 411 2.79e+01 a.104.1.1 76364 1i6vD 1264 2.90e+01 e.29.1.2 61857 1ussA 88 2.90e+01 a.4.5.13 -283 3gbp 307 2.94e+01 1gca c.93.1.1 35661 1gca 309 2.95e+01 1gca c.93.1.1 35659 1p9rA 418 2.98e+01 c.37.1.11 -7142 1d8cA 723 3.19e+01 1d8cA c.1.13.1 29325 1p7tA 731 3.20e+01 c.1.13.1 -5600 1egpB 25 3.27e+01 1dekA 241 3.48e+01 1dekA c.37.1.1 31842 1r1mA 164 3.53e+01 unknown_sccs -10431 1meoA 209 3.53e+01 c.65.1.1 79035 1mt0A 241 3.65e+01 c.37.1.12 85096 2rslA 140 3.67e+01 2rslA c.53.1.1 33345 1mejA 223 3.70e+01 c.65.1.1 79029 1hqmD 1265 3.74e+01 i.8.1.1 45975 2gbp 309 3.78e+01 1gca c.93.1.1 35657 1mzuA 129 3.84e+01 d.110.3.1 79714 1p6gP 82 3.90e+01 i.1.1.1 87834 1pfvA 551 3.93e+01 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1f4lA 551 3.93e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1j5wA 298 3.97e+01 d.104.1.1 71589